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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056715 ID=TCONS_00056715|Name=TCONS_00056715|organism=Clytia hemisphaerica|type=transcript|length=1058bp
ATTTAAATGGAAGATGATAAGTTGCAGTTTATCACTGTTAAAAAGTAGAT
TACTATCCTTCGACCAGGATCGAAGATTTTTTCGACATCTTTCTCCATTT
CCTTGATAGTCTGCAATAAGTCTCTAACTTTGCAGTGCCGATAGAGGGTG
GTGTCGTCGGCATACTGAATGCTACTGGATAATATTTGGTCGGAAAGTTC
AACGACATATAGATTGAATAACACAGGGCCTAGTATACTACCCTGTGGAA
CTCCGAAAAACATAGATTTAATTGATGAAGTTTTATCTTCGACTTGGACA
TATTGCTTTCTGTCTTTTAAATAGCTCGACAATAACTGCAGAGAATCAAT
GGAAAAATTCATGTCTCGTAATTTCAGAAGCAAATTGGTGTGATCAATAG
TATCGAAAGCTTTTGAGTAGTCTATTAGGATATGGTAACTTCACTTTTCG
CCACCGCTTTCTTGATATCATCCCTCAGTTTTACGAGTAAGGTTGTGGTG
GAGTGACCTTTACGAAATCCAGACTGTGTTTGGTGGTAAAGTGCTTTGTC
TTCGATGAATTTGCTAAGTTGGACTAAGATAACTCTCTCGAATACTTTAG
AAAGTACAGGAAGTACGGATATAGGACGGTAATCTTTGATCTTtataact
gaatcaatctttgGAATTGGACATACTCGAGCCACTTTCCATTGGCgagg
aaagatttttttgtcgATACAGTTATTAATAATGTGAACGAGTGGTGATG
TGACGAACTCTGATATTGGTTTAACAAACTTGATAGATATGTTATCAGAG
CCACAAGAGCAGTCATTCTTTATATTCTTTAGAATTTGGTTTACTTGATC
ATACGTGGTATGTTGGATTTTGAACGAGGTTTGGTCATTCAATGCCTCAA
GGTTGGGCGGTAACGTTGCTTCTACATTAGGTTTACCAGTGAGTTCTGAA
GCAAGTTTGCTATAATATTCATTCATCTCGGAGGGATGGTGGTTGATTCT
TAACCTTTGGTTGTTCAGTACTCGATGGATGGTGTTCCATACAGCTTTAG
GATCTTTA Run BLAST on NCBI protein sequence of TCONS_00056715-protein >TCONS_00056715-protein ID=TCONS_00056715-protein|Name=TCONS_00056715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
KDPKAVWNTIHRVLNNQRLRINHHPSEMNEYYSKLASELTGKPNVEATLP
PNLEALNDQTSFKIQHTTYDQVNQILKNIKNDCSCGSDNISIKFVKPISE
FVTSPLVHIINNCIDKKIFPRQWKVARVCPIPKIDSVIKIKDYRPISVLP
VLSKVFERVILVQLSKFIEDKALYHQTQSGFRKGHSTTTLLVKLRDDIKK
AVAKSEVTIS Run BLAST on NCBI transcript from alignment at scaffold_281:319517..320574 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056715 ID=TCONS_00056715|Name=TCONS_00056715|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_281:319517..320574 (Clytia hemisphaerica)
TAAAGATCCTAAAGCTGTATGGAACACCATCCATCGAGTACTGAACAACC
AAAGGTTAAGAATCAACCACCATCCCTCCGAGATGAATGAATATTATAGC
AAACTTGCTTCAGAACTCACTGGTAAACCTAATGTAGAAGCAACGTTACC
GCCCAACCTTGAGGCATTGAATGACCAAACCTCGTTCAAAATCCAACATA
CCACGTATGATCAAGTAAACCAAATTCTAAAGAATATAAAGAATGACTGC
TCTTGTGGCTCTGATAACATATCTATCAAGTTTGTTAAACCAATATCAGA
GTTCGTCACATCACCACTCGTTCACATTATTAATAACTGTATcgacaaaa
aaatctttcctcGCCAATGGAAAGTGGCTCGAGTATGTCCAATTCcaaag
attgattcagttataAAGATCAAAGATTACCGTCCTATATCCGTACTTCC
TGTACTTTCTAAAGTATTCGAGAGAGTTATCTTAGTCCAACTTAGCAAAT
TCATCGAAGACAAAGCACTTTACCACCAAACACAGTCTGGATTTCGTAAA
GGTCACTCCACCACAACCTTACTCGTAAAACTGAGGGATGATATCAAGAA
AGCGGTGGCGAAAAGTGAAGTTACCATATCCTAATAGACTACTCAAAAGC
TTTCGATACTATTGATCACACCAATTTGCTTCTGAAATTACGAGACATGA
ATTTTTCCATTGATTCTCTGCAGTTATTGTCGAGCTATTTAAAAGACAGA
AAGCAATATGTCCAAGTCGAAGATAAAACTTCATCAATTAAATCTATGTT
TTTCGGAGTTCCACAGGGTAGTATACTAGGCCCTGTGTTATTCAATCTAT
ATGTCGTTGAACTTTCCGACCAAATATTATCCAGTAGCATTCAGTATGCC
GACGACACCACCCTCTATCGGCACTGCAAAGTTAGAGACTTATTGCAGAC
TATCAAGGAAATGGAGAAAGATGTCGAAAAAATCTTCGATCCTGGTCGAA
GGATAGTAATCTACTTTTTAACAGTGATAAACTGCAACTTATCATCTTCC
ATTTAAAT Coding sequence (CDS) from alignment at scaffold_281:319517..320574 >TCONS_00056715 ID=TCONS_00056715|Name=TCONS_00056715|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_281:319517..320574 (Clytia hemisphaerica)
AAAGATCCTAAAGCTGTATGGAACACCATCCATCGAGTACTGAACAACCA
AAGGTTAAGAATCAACCACCATCCCTCCGAGATGAATGAATATTATAGCA
AACTTGCTTCAGAACTCACTGGTAAACCTAATGTAGAAGCAACGTTACCG
CCCAACCTTGAGGCATTGAATGACCAAACCTCGTTCAAAATCCAACATAC
CACGTATGATCAAGTAAACCAAATTCTAAAGAATATAAAGAATGACTGCT
CTTGTGGCTCTGATAACATATCTATCAAGTTTGTTAAACCAATATCAGAG
TTCGTCACATCACCACTCGTTCACATTATTAATAACTGTATcgacaaaaa
aatctttcctcGCCAATGGAAAGTGGCTCGAGTATGTCCAATTCcaaaga
ttgattcagttataAAGATCAAAGATTACCGTCCTATATCCGTACTTCCT
GTACTTTCTAAAGTATTCGAGAGAGTTATCTTAGTCCAACTTAGCAAATT
CATCGAAGACAAAGCACTTTACCACCAAACACAGTCTGGATTTCGTAAAG
GTCACTCCACCACAACCTTACTCGTAAAACTGAGGGATGATATCAAGAAA
GCGGTGGCGAAAAGTGAAGTTACCATATCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056715-exon-scaffold_281-1491911889:319517..320574 | TCONS_00056715-exon-scaffold_281-1491911889:319517..320574 | Clytia hemisphaerica | exon |
| TCONS_00056715-exon-scaffold_281-1510915933:319517..320574 | TCONS_00056715-exon-scaffold_281-1510915933:319517..320574 | Clytia hemisphaerica | exon |
| TCONS_00056715-exon-scaffold_281-1575043694:319517..320574 | TCONS_00056715-exon-scaffold_281-1575043694:319517..320574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:319517..320574 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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