TCONS_00056705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056705
Unique NameTCONS_00056705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056705 ID=TCONS_00056705|Name=TCONS_00056705|organism=Clytia hemisphaerica|type=transcript|length=714bp
GTCACATTGTTAATCTCTTATTACTGATCGTCACTCGTTATACACTACGA
GGCTTAGGAACTCTGTTACTCTACCTACTGAACCTTGAACTCTACATggc
gctgcaagtaggattttGAGAAGCCTCACGTCGTATTCAGCTTGCACCAT
CAGGATCAAATCGTTCATCCAACACGAGATCTCGAACTTATACATCCGCC
ATCTTGGTTGTTTTCATTTCCGTGGTCACACGCACCAAAGAAATCCACTC
GTACGGAACCGAACTCCCGCCCGCAAGCGCCCGTCCGCCTCACCTCTGAA
CCGCGCGTCCGCCCGCCTTCTACCGAACGCCCGCCAACCCGCCCTAATAT
CAACTACACCCGCTCATCGTATCGACGCTCTTCGCCCGTACCAGATCACA
GTATACTATGGCCTCCGAAGAGCAAATACAACGAATGCTCTTGCTCATGG
AACAACAAATGACACAACTGACGAATCTCCACGCGGAAAACGCACAATTA
AGAATCAACGTCGCCGCCGTCCCacctcaacaacaacaacagcatctGCA
GCCGAGGACGAAAACCAAATCCCCCGAGAGACCCATCATAAACGCCGACA
CTGATGAACAAGAATGGGAGCTTTTCAAGGACTCCTGGAATAGATACAAA
ACTATGACAGCCGTAACTGATGTCAACATGCTTCGACTAGAACTGAGAGC
GGCTTGCTCGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00056705-protein

>TCONS_00056705-protein ID=TCONS_00056705-protein|Name=TCONS_00056705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MASEEQIQRMLLLMEQQMTQLTNLHAENAQLRINVAAVPPQQQQQHLQPR
TKTKSPERPIINADTDEQEWELFKDSWNRYKTMTAVTDVNMLRLELRAAC
SQ
Run BLAST on NCBI

transcript from alignment at scaffold_281:145331..146044

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056705 ID=TCONS_00056705|Name=TCONS_00056705|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_281:145331..146044 (Clytia hemisphaerica)
CTTGCGAGCAAGCCGCTCTCAGTTCTAGTCGAAGCATGTTGACATCAGTT
ACGGCTGTCATAGTTTTGTATCTATTCCAGGAGTCCTTGAAAAGCTCCCA
TTCTTGTTCATCAGTGTCGGCGTTTATGATGGGTCTCTCGGGGGATTTGG
TTTTCGTCCTCGGCTGCagatgctgttgttgttgttgaggtGGGACGGCG
GCGACGTTGATTCTTAATTGTGCGTTTTCCGCGTGGAGATTCGTCAGTTG
TGTCATTTGTTGTTCCATGAGCAAGAGCATTCGTTGTATTTGCTCTTCGG
AGGCCATAGTATACTGTGATCTGGTACGGGCGAAGAGCGTCGATACGATG
AGCGGGTGTAGTTGATATTAGGGCGGGTTGGCGGGCGTTCGGTAGAAGGC
GGGCGGACGCGCGGTTCAGAGGTGAGGCGGACGGGCGCTTGCGGGCGGGA
GTTCGGTTCCGTACGAGTGGATTTCTTTGGTGCGTGTGACCACGGAAATG
AAAACAACCAAGATGGCGGATGTATAAGTTCGAGATCTCGTGTTGGATGA
ACGATTTGATCCTGATGGTGCAAGCTGAATACGACGTGAGGCTTCTCaaa
atcctacttgcagcgccATGTAGAGTTCAAGGTTCAGTAGGTAGAGTAAC
AGAGTTCCTAAGCCTCGTAGTGTATAACGAGTGACGATCAGTAATAAGAG
ATTAACAATGTGAC

Coding sequence (CDS) from alignment at scaffold_281:145331..146044

>TCONS_00056705 ID=TCONS_00056705|Name=TCONS_00056705|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_281:145331..146044 (Clytia hemisphaerica)
TTGCGAGCAAGCCGCTCTCAGTTCTAGTCGAAGCATGTTGACATCAGTTA
CGGCTGTCATAGTTTTGTATCTATTCCAGGAGTCCTTGAAAAGCTCCCAT
TCTTGTTCATCAGTGTCGGCGTTTATGATGGGTCTCTCGGGGGATTTGGT
TTTCGTCCTCGGCTGCagatgctgttgttgttgttgaggtGGGACGGCGG
CGACGTTGATTCTTAATTGTGCGTTTTCCGCGTGGAGATTCGTCAGTTGT
GTCATTTGTTGTTCCATGAGCAAGAGCATTCGTTGTATTTGCTCTTCGGA
GGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035722XLOC_035722Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056705-proteinTCONS_00056705-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056705-exon-scaffold_281-1491911889:145331..146044TCONS_00056705-exon-scaffold_281-1491911889:145331..146044Clytia hemisphaericaexon
TCONS_00056705-exon-scaffold_281-1510915933:145331..146044TCONS_00056705-exon-scaffold_281-1510915933:145331..146044Clytia hemisphaericaexon
TCONS_00056705-exon-scaffold_281-1575043694:145331..146044TCONS_00056705-exon-scaffold_281-1575043694:145331..146044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:145331..146044 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140506	0.342488	0.079544	0.155643	0	0.14973	0.361285	0.0933857	0.177602	0.439979	0.284703	0.23394	0.327061	0.242612	0	0.0428102	0.421909	0.324332	0.522763	1.01592	0.271698	0.596362	0.0805507	0.274651	0.150855	0.471221	0.192661	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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