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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=2527bp
CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT
CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT
ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT
GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG
GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa
tatgttcaaaaaattTAGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGC
AAACGATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGG
AATAGTACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTA
TAGAAGGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAA
AGAACACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTT
ATGCATTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAAT
GTACACCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTA
AACAAAGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAA
ACTAATAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGT
AATGTCGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGG
TTTTTATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTG
CTTTATTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAAT
ACAAGGATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTT
TTAAAAATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGAT
TCGAACATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATT
TGCATTGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGA
ATTTGATCAAATTGACATTGaatctcaaaaaataaaatgactcttagaga
aagttttgctgttttttttttcgtagtAGCTCGAATAAACGCCCAGGGCG
TCCAAAGTCACTTTGATAGGGCGAGTGGGAATGTACAAATATATCCTTTT
AGAGACGTAGAAGTAGATGAAAATCACTTTGATTGCTTTGATACAATAAT
CAATAAATACTgaagttttcttttattcatgatattcatgacgtaatgtt
ttcccGGTttgtagtggcaaattttatacaaattttgtctaatttaaatt
tgccactactggctaaaaccgaggtatttccgtagaaaacattacgtcat
gaatatcatgaatatgagAGTTCTCTTAAATCTTGATGTTTTAAACACCG
AGTTGTTCAAAAATGTGTCTATATAGTTCAAATCTCGATTTAGAGCGCTA
TTCAAGCGATAAATTTCAAACTTTGCATGACCAAAATTTAATCTAACTCC
AGGGAACTCTCAAAAACTGCAATGTCGAACAAAACAGCTAGTTAGTTGCA
GTTCTAATGATTGAAGATAGCATGAAAAGCGTTCTACGTCAAAGTTTATA
CTTCGTGGACACAATTTCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCG
TTTATTTTGGGAGCCATCatataaaaaacttttcctttaatgaggggcgt
ttattcgacgGGACAATCTAAAAAAGTTaccgtttattcgaagtaatgtA
ATCGATTTTCGTCATTTTGGAACACTTATATTAGAAAGGGAAGTTTTTTG
TACTTGGTGCAAAAAGGTACCTTATCTCTCGCACTACCTCTTTCCTAATT
TGCCTAAGTTTCCTATCCCAGGGGTCGACACTGAGGCCATTTCGATTGAA
CTGATTACATCGAAAAAAGGTAACaaaattacacccctgtgtcagggaaa
aatagaatttctatctttATTGGAATTTCGCCGTGAGAagaagctccacc
ggggctgcgagacaggggtgtgaaattttgatcaaatgaTGAAAATCTTT
TAATAATGTGAGGGAgttttatactatttgtaagtttgtaaatattttaa
atatttttcttttaatatctTCTTATAAATACATTTACAATTTTTCCCGC
CGAAACTTttactaaaaaagagaaaaaatacaCTATAATAATGTGTACAA
TATTCTTGAATTTTACATTAAACAACACTAGAAATATAGATTATCGCCCA
GTCTCTTTTCTATCTTCCTAGCTTGTCTGTTGATGTATTTCCATGTGTTG
ACCTCATGAGCATTTTCGTCATCTTGGGGTTGATAACATCAGTCTGGTGA
ACTCTGTAGATAAAAAGTGGTAAATACATTATTACATTATAGCCACATTT
TGATGTCGTTGACATTGACTGTCTCGAGAAATGGGCATGCGCCCGCCAAA
GATTTTTCGAGAGATTTGAATAGTGAA Run BLAST on NCBI protein sequence of TCONS_00056647-protein >TCONS_00056647-protein ID=TCONS_00056647-protein|Name=TCONS_00056647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MLQKSNEKPQIQFWRNSTRENCHFLRRIQSIYRRFKWKMSFKQMSTCRKN
TVCAFVWTSCTFCLLMHSSVDIHWSHVTTTPMYTTKSIQNMQTLNNGVKQ
RLYVGIWKYCDIELQTNKILGCFKTAELFGGVMSEKEIVIPEWLMLCWVF
MFCGLVINLMSVFNLLYSIYTNSRQRLWQFLIQGFVTFFSLGVVILYSFK
NSDYNNPQTADGGSDSNISFEQHQHFEVSERFALNFYLVLLAGCISMANL
IKLTLNLKK Run BLAST on NCBI transcript from alignment at scaffold_279:34346..37856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=3511bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica)
CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT
CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT
ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT
GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG
GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa
tatgttcaaaaaattTAGGTAAGTTATGaaagttaaaatcttcatccttt
tttttttgcaattttgaacttgaaattgtttttatctAGGTAATCTAGGC
TTTAAATCATATTTTTACCCTTTATTTTCCTGTATTAATCTGGCTATCTG
ACTATCCCATACTCAAATTTGTTCTTAGATTATTCTTATTATCTGGTGTT
ATTGAGCCTGGTTGTTGTTATGAAATTGTTCTAATAAAGCACATTGCAGT
ATTTTTCTCTTACTTGCTATAATTTGTGTGAATTCGAAGATGTGAAGGCT
TTAAACAaacccggcggaacaaccgttaaaGAGGGGGAGGCTGaaagctc
aaaatgagataaaattcgctaggaatttgagaaaaaaatctcaatagCCT
TGgttgaagtctccccagtctccccgttCCCACCGGGCCTGTTAAAAATC
GTCAAAGATTGGTTGGTGATGCAATTTGAGCAAATGCAAAGTTCCAAAGT
TTTAGTCTGTGTTATAGTCTACATATATCAACACACTTGTTCGTCCTAGT
AGCGCATGACTTGACACAAAATGAAGCCACGGCTTCCGAAATCTTCATCA
TCAACGAAAATGTATCCTTTGTTATATAACAGGCGCTAGGACATCAAATT
ATCAAACAATATgatttaaaatattgataacCGGAGCTTATCATTTTATG
CTAGAATTTTCTCCTTCGTCGTCACATCGCATCAagagaaatattcaata
taagaaatcttttacatcgATATCTAAATTGAACAAAACCCCTCGACGCT
TATCCAGTCAGAGAGAGCTGTCTACTTTCAGTTTCACTTTCTGGAGATTT
GTGACAGTTTGGAGTAATAAAAAATTCTATCGATCATTCTCTCCAACATT
CCATATACTATAATAATTGATatctatactttacttttttgtaaaacaAC
ATATCTATAAGTATATGGTTGAAGTTTAATTTTCCATATATATTTTATAT
AGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGCAAACGATGTTACAAAA
ATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAGTACTAGAGAAA
ATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAAGGTTTAAGTGG
AAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAACACAGTTTGTGC
TTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCATTCGTCAGTGG
ATATTCATTGGTCGCATGTAACAACAACACCAATGTACACCACAAAGTCT
ATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAAAGGCTTTATGT
TGGAATATGGAAATATTGCGATATAGAACTTCAAACTAATAAAATTTTAG
GCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGTCGGAAAAAGAA
ATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTTATGTTTTGTGG
ACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTATTCCATTTACA
CCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAGGATTTGTGACA
TTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAAAATTCAGACTA
TAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAACATTTCTTTTG
AGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCATTGAATTTTTAC
TTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTGATCAAATTGAC
ATTGaatctcaaaaaataaaatgactcttagagaaagttttgctgttttt
tttttcgtagtAGCTCGAATAAACGCCCAGGGCGTCCAAAGTCACTTTGA
TAGGGCGAGTGGGAATGTACAAATATATCCTTTTAGAGACGTAGAAGTAG
ATGAAAATCACTTTGATTGCTTTGATACAATAATCAATAAATACTgaagt
tttcttttattcatgatattcatgacgtaatgttttcccGGTttgtagtg
gcaaattttatacaaattttgtctaatttaaatttgccactactggctaa
aaccgaggtatttccgtagaaaacattacgtcatgaatatcatgaatatg
agAGTTCTCTTAAATCTTGATGTTTTAAACACCGAGTTGTTCAAAAATGT
GTCTATATAGTTCAAATCTCGATTTAGAGCGCTATTCAAGCGATAAATTT
CAAACTTTGCATGACCAAAATTTAATCTAACTCCAGGGAACTCTCAAAAA
CTGCAATGTCGAACAAAACAGCTAGTTAGTTGCAGTTCTAATGATTGAAG
ATAGCATGAAAAGCGTTCTACGTCAAAGTTTATACTTCGTGGACACAATT
TCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCGTTTATTTTGGGAGCCA
TCatataaaaaacttttcctttaatgaggggcgtttattcgacgGGACAA
TCTAAAAAAGTTaccgtttattcgaagtaatgtAATCGATTTTCGTCATT
TTGGAACACTTATATTAGAAAGGGAAGTTTTTTGTACTTGGTGCAAAAAG
GTACCTTATCTCTCGCACTACCTCTTTCCTAATTTGCCTAAGTTTCCTAT
CCCAGGGGTCGACACTGAGGCCATTTCGATTGAACTGATTACATCGAAAA
AAGGTAACaaaattacacccctgtgtcagggaaaaatagaatttctatct
ttATTGGAATTTCGCCGTGAGAagaagctccaccggggctgcgagacagg
ggtgtgaaattttgatcaaatgaTGAAAATCTTTTAATAATGTGAGGGAg
ttttatactatttgtaagtttgtaaatattttaaatatttttcttttaat
atctTCTTATAAATACATTTACAATTTTTCCCGCCGAAACTTttactaaa
aaagagaaaaaatacaCTATAATAATGTGTACAATATTCTTGAATTTTAC
ATTAAACAACACTAGAAATATAGATTATCGCCCAGTCTCTTTTCTATCTT
CCTAGCTTGTCTGTTGATGTATTTCCATGTGTTGACCTCATGAGCATTTT
CGTCATCTTGGGGTTGATAACATCAGTCTGGTGAACTCTGTAGATAAAAA
GTGGTAAATACATTATTACATTATAGCCACATTTTGATGTCGTTGACATT
GACTGTCTCGAGAAATGGGCATGCGCCCGCCAAAGATTTTTCGAGAGATT
TGAATAGTGAA Coding sequence (CDS) from alignment at scaffold_279:34346..37856+ >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica)
ATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAG
TACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAA
GGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAAC
ACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCA
TTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAATGTACA
CCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAA
AGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAAACTAA
TAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGT
CGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTT
ATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTA
TTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAG
GATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAA
AATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAA
CATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCAT
TGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTG
ATCAAATTGACATTGaatctcaaaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056647-exon-scaffold_279-1491911889:34346..34613 | TCONS_00056647-exon-scaffold_279-1491911889:34346..34613 | Clytia hemisphaerica | exon |
| TCONS_00056647-exon-scaffold_279-1510915933:34346..34613 | TCONS_00056647-exon-scaffold_279-1510915933:34346..34613 | Clytia hemisphaerica | exon |
| TCONS_00056647-exon-scaffold_279-1575043694:34346..34613 | TCONS_00056647-exon-scaffold_279-1575043694:34346..34613 | Clytia hemisphaerica | exon |
| TCONS_00056647-exon-scaffold_279-1491911889:35598..37856 | TCONS_00056647-exon-scaffold_279-1491911889:35598..37856 | Clytia hemisphaerica | exon |
| TCONS_00056647-exon-scaffold_279-1510915933:35598..37856 | TCONS_00056647-exon-scaffold_279-1510915933:35598..37856 | Clytia hemisphaerica | exon |
| TCONS_00056647-exon-scaffold_279-1575043694:35598..37856 | TCONS_00056647-exon-scaffold_279-1575043694:35598..37856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_279 | supercontig | scaffold_279:34346..37856 + |
Blast
The following BLAST results are available for this feature:
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