TCONS_00056643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056643
Unique NameTCONS_00056643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056643 ID=TCONS_00056643|Name=TCONS_00056643|organism=Clytia hemisphaerica|type=transcript|length=2731bp
caccGGTACAGGCAAATTTCAGGAAAATATGAAAagtacttagaaaacag
ttagaagcACTTGAGAAAGtaagaaaatcaggatagacaataggaaagta
gaaaataagggggaaataagagaggatgcatcctggtggatgatatagTT
TGCCAACctttttaaaccatacaggggtattgaagaacttttccaggggg
tctcAGCCTCAATTTTCTAAGGGGGTTTTTGTTCatctttcagattttcc
aagccAGTCAATATATTAAAAGCATTTGACTTATTTCATTTGTAACCATT
TTCCTTCTGAGAGATGAAAGTTTTTGCTTTGACCGCTGACCTTTTTTTTT
ACCTACACTCgtgaaaacattttaaattaAGTAAATGAATTGTATTTTTA
CTTTTCCAGCCTCAAAATATGAATTCTTAAACTAAACTAAGCACAATGAA
AGATCTATTTAGTGTTGACTTTCGTGATGCAATCAGAAAAGTAGTGCGtt
ctgaattgaaagaaaaatttggtATCAAGATTCACAAAGAGAAACACAAA
GGAACGagTTCATCCACAACGACGTGTCAATCAAAGTATTTTGGTGTCCC
ATTAGAAGACGTCCCCTCAAAAAGTGTCAAAGATGACCAATACTTCCGAA
TACCGATATTTCTAGCAGATTCGTTAGATTACCTCAACCATCATGTCAAA
ATTGAAGGACTTTTTCGCAAGTCAGGGTCAGTTGGAAGACAGAAAACTTT
AAGGgaaCTCCTTGAGAAAGATGGGACTTGTTGTTCTTGCGAGTTTGTCC
AACCACACGATATAGCTTCATTAGTGAAACAATTCTTCCGAGAATTGCCA
GATCCTCTACTAACCAGAAGATATTGTCCAGCTTTCTTGAAATGTATTTC
GTTGAATAATACTAATGACTGTATACCAGCGCTGGCTTTGTGTTGTTTAC
TGTTGCCCGACGAACATTTACGagtgttgaaatattttgtacAATTTATA
TCCGAAATGGCAAACCATTCATTGGAATCTAAAATGACTCTATCAAACTT
AGCCATTATATTTGCACCAAACCTAACAGCTTCATCTTCAAGTAAAGAGA
AAAATGgggaaaagactttgaaagatttTACGCAAATTGTGGATTTGTTG
TTTAAAAATGCGCACCTGATTGGTATGGTTCCTGACGCTTTGTTTAATAA
AGCCCTAACAATGAACCAAGAAGGAGGATTTTGCAGTTCTTCGGGTGATG
AACTGGATGTGGCCACGGATGAGCATCCAGGTCGTGGACGCAATCTCCAA
AGATCGGATAAGAAAAGAGATAGAAGCAAATCTATAACAGgttttctgCG
TCGAAACTTCAAAGCGAACGAGAAAACAGAGAAATCTTCTAGTTCGACCA
ACAAGCATGCAAGGTCGAGGACCTGTGAAAAGCCTTCAACAAGCAAGGAA
GATTTGCTACAAATTCCCACAAGAACTGACTCAATAAAAGAATTCGGCGA
GCCAGTTTGGAGGAACCAACACAGTGAAAAACCAAATACTAAACGAAGAA
ATAATTCCAAAACAAACATGAGTCCTGTCCGAAAAAGTCCTCGTTTGAGT
GCGCGGGAAGTGCACCACGCTACACCACCAGTTATCTCGCTTGCCAAACT
GAAATCTGTTTCCAATCAAGTAGCATCGACGCCGAGACGATTACTTCAAC
CTATACACGGCAATCAAGATCGCGAGAGGGTGGCTCGAGCATTACCATCA
CTCCCTTCGAGATATGGTCCCCCAATATCATCAACAGCATTAAAAACGAA
AGTCACAAAAACTGATGAAAACCAAATTCCGAAAATACCACCACCTACAA
AACCAAAACCACGATTGACTCGTTCCAAGTCCTCCACTCTGCACCATTCC
TCCGCGCGTCGCAGAGAATACGACGGCCCAAAGTCTCCACATCACAAAAG
AGTTTGACTGACAGCAATTTGAGCAACCAATCTATATCAATGGAAGAAGT
ATGGTCAGCATCCTCAGGCTTTGATGACGACACAAAAGATCGCGCATTCG
TTGAAAATCAATCCGCTGCTCTTCCGCCCATTGCCACTCTCGATTTATCA
ACTACTGAAAACCATACCCCGAAACCACGCACTGCCCGACGTCGATTGCC
GAAAGCTTCTAGCTCAACTGCATGTTGTAACGGTAGAGAAAGTTCTTCTA
ATAGAGACGGGAACACAAGCCCGATTACACCGGACAAACGGCAAATACGC
CGATCCAACACAACTATGGGCGGCAAACGAAAACCGGCCACGCCGTACAG
TGTTACACCCCAAGTGGGTTCACGTAGGTCCGCTCAAGCTGTTGCTTTTG
TTGAAAGCAGGACTCCGTTAGTTTTGTAATCAGGGATTTAAGGAGGCAGT
TAAAGGTTGGGAGGTTTGGTTTAAGTTTAGGTTTTTATCGTTTTCAAAAA
CTCTGCTATTTTCCTGGAATAAGTTAAACTTGTGAGAATCTTTGCATCTA
CAGTTGCCAAGAAGGTTGTTTGTTGATTATTTGGAGTGTTCATTTTAACT
TGATTCTTTCTTATGTGAGAAAGAATTTGATACTTTATTAAAAAGACTTG
TACTGTATAATATTTTATCGATTAagtattttgacaaaatttattAGCAT
TAATTCTTATTGTAAATTTGGCTGTTACCCATTTCTTTTGCTTAAGTTTC
AAGTTACTTTAacgtcttttttcattttttt
Run BLAST on NCBI

transcript from alignment at scaffold_279:3918..12062+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056643 ID=TCONS_00056643|Name=TCONS_00056643|organism=Clytia hemisphaerica|type=transcript|length=8145bp|location=Sequence derived from alignment at scaffold_279:3918..12062+ (Clytia hemisphaerica)
caccGGTACAGGCAAATTTCAGGAAAATATGAAAagtacttagaaaacag
ttagaagcACTTGAGAAAGtaagaaaatcaggatagacaataggaaagta
gaaaataagggggaaataagagaggatgcatcctggtggatgatatagTT
TGCCAACctttttaaaccatacaggggtattgaagaacttttccaggggg
tctcAGCCTCAATTTTCTAAGGGGGTTTTTGTTCatctttcagattttcc
aagccAGTCAATATATTAAAAGCATTTGACTTATTTCATTTGTAACCATT
TTCCTTCTGAGAGATGAAAGTTTTTGCTTTGACCGCTGACCTTTTTTTTT
ACCTACACTCgtgaaaacattttaaattaAGTAAATGAATTGTATTTTTA
CTTTTCCAGCCTCAAAATATGAATTCTTAAACTAAACTAAGCACAATGAA
AGATCTATTTAGTGTTGACTTTCGTGATGCAATCAGAAAAGTAGTGCGtt
ctgaattgaaagaaaaatttggtATCAAGATTCACAAAGAGAAACACAAA
GGAACGGTATGTatattttacttaattttaaGTTAAATCTGATTCATATT
CTGACTTCTTATACTGTGTgcattttaataaaataaaattgcgagtaaga
ttttttgctttcaaaataaGGCATACAGTACATCCTTAAATTGACTTGTA
AAAATTGttagaatttgaattttttaaacaagTTGGATCATTTTGTATTT
AGCTGATATAATTGTTCGCTTGAAACTTAAAGTTCtacaaaaacaaagtt
ttggaTTTGTAAGTCATATCCCAGGTATAatgataaaacatttttttttt
gtcagtaAATGATGACCTCTAGATATTTCTCGACTCTTGGCCTGTGAATG
AATCAAGCaatgatataaaaaaaattttcttagagTTCATCCACAACGAC
GTGTCAATCAAAGTATTTTGGTGTCCCATTAGAAGACGTCCCCTCAAAAA
GTGTCAAAGATGACCAATACTTCCGAATACCGATGTAAgtaagattttca
aattttaactgGGAATTTTTCTTGTTGTTAATTGATCCTCAATATCAATG
AACTTGACAAATTCACATAATGTTGTGCTATACAAAGCGCAAATTAAATC
ACGTGATTTTGAATATTCTATTCATTCCATAatttaattcaattaatttt
cgTGCGCCTTTTATTTTCACGCTNACAAAGCGCAAATTAAATCACGTGAC
TTTGAATATTCTATTCATTCCATAatttaattcaattaattttcgTGCGC
CTCTAATTTTTGCgtctttaattttcgcgcagcTCGTAAAATAGAATATT
CgcacattttgcaattttaagaatattctcTGAGTGTTTTTGACGAAACT
CACTTTCAGTGTGTATTCAAGCTAGATTTTACATCCCAGAGGCATATTTA
CCATGAATCGATTCCCATTATATTAAAAGAGCACTAAGATGAGATTTTTA
CACGTTCAGAACGATTACTAATTCCAAGTGCGCAAAAATAGGCCTATTTC
GCGCGCCTTTTATTTTCGTGCACGTATTTTGCGCGAAAATAAAAGACGCA
CACATATTTTTCGCGAAAAGAAAAGGCACGCGAAAATTCATGAAATTAAA
ATTGGAAATAACagagaaaaattatatttaatcTTCCATCTCTTCAGATT
TCTAGCAGATTCGTTAGATTACCTCAACCATCATGTCAAAATTGAAGGAC
TTTTTCGCAAGTCAGGGTCAGTTGGAAGACAGAAAACTTTAAGGGTAAAT
ATTTTTCTCATCActcagaccatgttcagaccTTACGGCCGTAACACTct
gaaacgaaacggttccgaaacaaatTTGAACgtgaaaattcgaaacatta
aaAGAGAAGATGTTATGAAGCAAAACAGATccaaacggtttcgctccatt
ttttcatctaaacggaactgctccgttttcatGCTCCGAAAAGTTTCGAA
ATCAGTATGAACACTTCCTATCGGTAACGGAAACCGTACCGGAGCGATAC
GAAACTGTAACGTCTAAACATGGTCTCAAACCTAAGAGATAATCAAAGTC
AATATCAAAACATTGTACATAACGACCTATTAAACGCTTTTGTAATTCGA
AATGAAATATGACTCGAAGAACTTTTATATGGCCTCTTTATAAAAAATAG
GTTAAAGGGGAGTCAAtcgttattttctttatttttcaggaaCTCCTTGA
GAAAGATGGGACTTGTTGTTCTTGCGAGTTTGTCCAACCACACGATATAG
CTTCATTAGTGAAACAATTCTTCCGAGAATTGCCAGATCCTCTACTAACC
AGAAGATATTGTCCAGCTTTCTTGAAATGTATTTCGTTGAATAATACTAA
TGACTGTATACCAGCGCTGGCTTTGTGTTGTTTACTGTTGCCCGACGAAC
ATTTACGagtgttgaaatattttgtacAATTTATATCCGAAATGGCAAAC
CATTCATTGGAATCTAAAATGACTCTATCAAACTTAGCCATTATATTTGC
ACCAAACCTAACAGCTTCATCTTCAAGTAAAGAGAAAAATGgggaaaaga
ctttgaaagatttTACGCAAATTGTGGATTTGTTGTTTAAAAATGCGCAC
CTGATTGGTATGGTTCCTGACGCTTTGTTTAATAAAGCCCTAACAATGAA
CCAAGAAGGAGGATTTTGCAGTTCTTCGGGTGATGAACTGGATGTGGCCA
CGGATGAGCATCCAGGTCGTGGACGCAATCTCCAAAGATCGGATAAGAAA
AGAGATAGAAGCAAATCTATAACAGGTTTCATCTTACTCGCAACAGCatt
tactttaatcggattaactttcgcgagattaaatttcgcaatttcgcgag
tttttttgccattttcgcgtgagattcctgattTGCATTAAATtcacaac
aaaattttttgaatcgcTTTTTCGGCGTAGAAACCAGTCCAAAGTCTCCA
TTTGTggaaaaaatggctattttcagctgttttcaggcttattcgcgaaa
ttaaatccacgcgaaatttttcaaaactctgaccCGCGAcgttaaatcca
gaaaattgaaatttgatctcgtgaaatttaatccaattaaagtatcCCTT
TTAGAAGATTTATTactctttcttctttcttctactCCTTTGAATGCAAA
TAATCAATTGCACGATGATGCATGTATTTTTAGTTCAAGATTCCACTCCA
CGCTTTTGTCTCCAGTTTTGCGTATAAAAATCCAACCCATTTTACATCAG
CTttattttagctatttttcgattcgctttttttttcaggttttctgCGT
CGAAACTTCAAAGCGAACGAGAAAACAGAGAAATCTTCTAGTTCGACCAA
CAAGCATGCAAGGTCGAGGACCTGTGAAAAGCCTTCAACAAGCAAGGAAG
ATTTGCTACAAATTCCCACAAGAACTGACTCAAGTATACTCACTTTTTTC
CGTAAAAATCTTTCTCGTGAAaacttaaaatatttcaaatagatTTTGTC
AAATTCGTCGTGATAATTAGGCTGTTCGACATAAAAGTTGTCTTCGAGTT
CTAAAGGTTCATTTCTTGACTTGAACCTTCTTAGCAAAAGTAGTTCTTGT
TCATAACAAGATGATCCCTTGATATTTTAATGTTTCCTAATTCCATACTT
TGAATTTctactactttcgttttcagtaaAAGAATTTGGCGAGCCAGTTT
GGAGGAACCAACACAGTGAAAAACCAAATACTAAACGAAGAAATAATTCC
AANTCAGTAAAAGAATTCGGCGAGCCAGTTTGGAGGAACCAACACAGTGA
AAAACCAAATACTAAACGAAGAAATAATTCCAAAACAAACATGAGTCCTG
TCCGAAAAAGGTAGAAATATATATCTCTACAAATATTGACTATATCACAG
CAGGATCATATGCATATAACTGCACATTTTCATCGTtatagtggggtcgt
ttagcataatttacaggaaaaaaataatatatagctgaaactttctccag
accttctctataggatgcttatgcctcaggaaaaaaatNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaagaaattgcccaaa
aaagggatgttccaccagtgggattttaggggattttttcctgaggcata
agcatcctatagagaacgtctggagaaagtttcagctatatattattttt
ttcctacaaacagcctgtacttTTGTAACACGACTAGGATCTCCAGTTCG
TTGATATAGGTTTGTATTGAACTTAATACAGGCATGTCTGTCTTACCGTA
ACTTCCCTGAAAACATGCTATCTTAAAAAATTATTCGTGGATTAAGTCTT
AATTGATGTTAATGAATATTTTCCTTTGCAGTCCTCGTTTGAGTGCGCGG
GAAGTGCACCACGCTACACCACCAGTTATCTCGCTTGCCAAACTGAAATC
TGTTTCCAATCAAGTAGCATCGACGCCGAGACGATTACTTCAACCTATAC
ACGGCAATCAAGGTATTTCATCTTTCTCACTAAGTTAGATAAAGTCGATA
TTTTACCAGTTAATGTAGATAGCCTAGAAATCAAGGACTTTTAGAAGGGC
TATTTATAAACTTAACGGAatattggaaggagcggggaatCGAACCAGGA
TCCCCTGGTTTAAGGGTCTTACGACATTAACCATTCGGCCACTGTcctta
ttgttgttttttttcacagtTAATATATTGCATATAGAATCATTATTCGG
GTTGAATAATGACCATTCTTCACGGTTTTTTGTCGTGATTTAATATGAGC
ATGAGAATAAATTATTGTGACCGTTACGACACAAAGGCTTCTATACAGTt
tttcatgttgtttttttaagtgACGTAACTTCAGCCAATTTGGAAGTAAA
CGTTCGATTAGCAAGAGATcgcctctacagattcgaacatTCACTTAAAT
AATGGCGGAAAATATGCAagttaaaaatatgaaaaacttaCATATGTGTA
TGTGTTATTTTGTCTCTGTCATTTAAGTCCTACTTCGTACTTTTTTATAG
ATCGCGAGAGGGTGGCTCGAGCATTACCATCACTCCCTTCGAGATATGGT
CCCCCAATATCATCAACAGCATTAAAAACGAAAGTCACAAAAACTGATGA
AAACCAAATTCCGAAAATACCACCACCTACAAAACCAAAACCACGATTGA
CTCGTTCCAAGTCCTCCACTCTGCACCATTCCTCCGGTAATAATTCAATC
ATAAGTCAATCCAGTGAAAAGATGACAATATTTGCCACAGTTACGGCAAC
GACAACTGACAATAACGTCGAGACAACGACACAACAACGACAACCAGTAC
AACCTAAATTGAGTCGTGCAACACAAAAACCTCATGTCAGAAAGAATAGA
CGACAGTCATCATTGGATCGAAGGCGTGCTCGTTATGCAAGGTTAGACGC
GCATCCAAACTCTCAAAGCTTCACACAGTATAGTTCTAGTGCTCAAGTAA
AGATTGAGTTTTGAGTAGATTGCTTTGGTTAGCTTCTACAGAGTCGCGTT
TAGCCTTGCATTGCATGCCTGAGTATCCAAAATGTAGACAGAAAGTTAGA
ATCATTCATAAGATGTCTGAAGCTAAAGGCTTATTTTACTGCACTGTTAA
AAACATACAAAACTAccttaaaagaaagaaaacttgGCGGATTTAAATAC
CCTACAACCACTTACCTAAACTACATTCCTGCCAAACTTTCTTTCAGCGT
ATGTTAAAGTTATTGACATTCTTGATTCGAGAAAATTCTTGAGAGTGAGT
TCTGTATGCAGTAAGAATATCATAAGAGTTTATTAGAAGTTGAGCTTTGT
CGTAACAAACCTTACGCACCACATGTTTTGTCTTTATTACACGATAAATC
TTGATTTTAGTGTTTCATTCTTCATCTTTAGCGCGTCGCAGAGAATACGA
CGGCCCAAAGTCTCCACATCACAAAAGAGTTTGACTGACAGCAATTTGAG
CAACGTAAGTCTCTTTTCACAAGAAGAAGGAAAAATGTTTATATAATTCT
ATCTGACAAAAGTCAGACAGAAGAAATCTCGATTTTTTTTCCGCGGAGGA
aggaaaaaacttttctttcgtCCCAGCTAGCCCACGTGTAAATGAACGAA
ATCCACATGACCCgtgaatttttttccttttcggAAAATGTCGCTATTAA
AAAAGCTTTTATCTTATTGCAGACTTAATGTGGTTACCACGCCCTGTGAA
AGGTGTCGTTTGTAACTGTCTCTTTAGCGAAACCTCCATATTCTACATgc
tttacatattttttttataagcatatgaaggctcagatttgcagaattcc
tacgcataacataagcatatatgtcagcctggaatattttcaagttgtca
ttttttatctctttaaagaggtttggtagaggtcaagtaaaaaaagaaat
tccacggctagctacattccactgctctcaaaatcttaaatttcactaaa
aacttggctcggggtgaatcataagcatgattcaaaCGCATATAACAAGC
ATAATCTATGCCTGGTTGCTttaagaacttaagcatacacgagcctgacc
aaggggcatacacttgcttataaaaaacaaaccgacttttgtaatgaaat
tgaATGATTGGTATTTTTTGGAGACTTTTTTCGAGCCTGGATTTCAGGGA
AGCTTTCGGGTGGGGAGCAACCCATAGAGACACTTGTacgttgaaataaa
aataactgaTAATCGTCATTCTTATATTGACTGTTTTACAGCAATCTATA
TCAATGGAAGAAGTATGGTCAGCATCCTCAGGCTTTGATGACGACACAAA
AGATCGCGCATTCGTTGAAAATCAATCCGCTGCTCTTCCGCCCATTGCCA
CTCTCGATTTATCAACTACTGAAAACCATACCCCGAAACCACGCACTGCC
CGACGTCGATTGCCGAAAGCTTCTAGCTCAACTGCATGTTGTAACGGTAG
AGAAAGTTCTTCTAATAGAGACGGGAACACAAGCCCGATTACACCGGACA
AACGGCAAATACGCCGATCCAACACAACTATGGGCGGCAAACGAAAACCG
GCCACGCCGTACAGTGTTACACCCCAAGTGGGTTCACGTAGGTCCGCTCA
AGCTGTTGCTTTTGTTGAAAGCAGGACTCCGTTAGTTTTGTAATCAGGGA
TTTAAGGAGGCAGTTAAAGGTTGGGAGGTTTGGTTTAAGTTTAGGTTTTT
ATCGTTTTCAAAAACTCTGCTATTTTCCTGGAATAAGTTAAACTTGTGAG
AATCTTTGCATCTACAGTTGCCAAGAAGGTTGTTTGTTGATTATTTGGAG
TGTTCATTTTAACTTGATTCTTTCTTATGTGAGAAAGAATTTGATACTTT
ATTAAAAAGACTTGTACTGTATAATATTTTATCGATTAagtattttgaca
aaatttattAGCATTAATTCTTATTGTAAATTTGGCTGTTACCCATTTCT
TTTGCTTAAGTTTCAAGTTACTTTAacgtcttttttcattttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035677XLOC_035677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056643-exon-scaffold_279-1491911889:3918..4473TCONS_00056643-exon-scaffold_279-1491911889:3918..4473Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:3918..4473TCONS_00056643-exon-scaffold_279-1510915933:3918..4473Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:3918..4473TCONS_00056643-exon-scaffold_279-1575043694:3918..4473Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:4851..4951TCONS_00056643-exon-scaffold_279-1491911889:4851..4951Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:4851..4951TCONS_00056643-exon-scaffold_279-1510915933:4851..4951Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:4851..4951TCONS_00056643-exon-scaffold_279-1575043694:4851..4951Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:5615..5711TCONS_00056643-exon-scaffold_279-1491911889:5615..5711Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:5615..5711TCONS_00056643-exon-scaffold_279-1510915933:5615..5711Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:5615..5711TCONS_00056643-exon-scaffold_279-1575043694:5615..5711Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:6157..6742TCONS_00056643-exon-scaffold_279-1491911889:6157..6742Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:6157..6742TCONS_00056643-exon-scaffold_279-1510915933:6157..6742Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:6157..6742TCONS_00056643-exon-scaffold_279-1575043694:6157..6742Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:7257..7400TCONS_00056643-exon-scaffold_279-1491911889:7257..7400Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:7257..7400TCONS_00056643-exon-scaffold_279-1510915933:7257..7400Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:7257..7400TCONS_00056643-exon-scaffold_279-1575043694:7257..7400Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:7725..7827TCONS_00056643-exon-scaffold_279-1491911889:7725..7827Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:7725..7827TCONS_00056643-exon-scaffold_279-1510915933:7725..7827Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:7725..7827TCONS_00056643-exon-scaffold_279-1575043694:7725..7827Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:8899..9029TCONS_00056643-exon-scaffold_279-1491911889:8899..9029Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:8899..9029TCONS_00056643-exon-scaffold_279-1510915933:8899..9029Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:8899..9029TCONS_00056643-exon-scaffold_279-1575043694:8899..9029Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:9568..9753TCONS_00056643-exon-scaffold_279-1491911889:9568..9753Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:9568..9753TCONS_00056643-exon-scaffold_279-1510915933:9568..9753Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:9568..9753TCONS_00056643-exon-scaffold_279-1575043694:9568..9753Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:10449..10521TCONS_00056643-exon-scaffold_279-1491911889:10449..10521Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:10449..10521TCONS_00056643-exon-scaffold_279-1510915933:10449..10521Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:10449..10521TCONS_00056643-exon-scaffold_279-1575043694:10449..10521Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1491911889:11309..12062TCONS_00056643-exon-scaffold_279-1491911889:11309..12062Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1510915933:11309..12062TCONS_00056643-exon-scaffold_279-1510915933:11309..12062Clytia hemisphaericaexon
TCONS_00056643-exon-scaffold_279-1575043694:11309..12062TCONS_00056643-exon-scaffold_279-1575043694:11309..12062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_279supercontigscaffold_279:3918..12062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22655	3.67166	3.34551	4.28024	29.8769	26.5469	12.8852	15.0226	7.243	9.0855	5.03209	5.42965	4.0971	2.3675	4.07251	6.94665	12.2713	10.2829	0.69853	2.22763	5.67428	5.80806	10.882	9.40232	17.2229	17.0301	2.15921	1.89947	7.2527	7.72982
Blast
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BLAST of TCONS_00056643 vs. Swiss-Prot (Human)
Match: RHGBA (Rho GTPase-activating protein 11A OS=Homo sapiens GN=ARHGAP11A PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.877e-35
Identity = 109/300 (36.33%), Postives = 150/300 (50.00%), Query Frame = 2 
Query:  482 IRKVVRSELKEKFGIKIH-------KEKHKGTSSSTTTCQSKYFGVPLEDVPSKSVKDDQYFRIPIFLADSLDYLNHHVKIEGLFRKSGSVGRQKTLRELLEKDGTCCSCEFVQPHDIASLVKQFFRELPDPLLTRRYCPAFLKCISLNNTNDCIXXXXXXXXXXXDEHLRVLKYFVQFISEMANHSLESKMTLSNLAIIFAPNLTASSSSKEK---NGEKTLKDFTQIVDLLFKNAHLIGMVPDALFNKALTMNQEGGFCSS-SGDELDVATDEHPGRGRNLQRSDKKRDRSKSITGFL 1348
            +R  +   L+  +GIK+        + +H+   ++ T    K FGVP   +P  +V   +Y  IP FL D+   L  H+  EGLFRKSGSV R K L+  ++    C S     P DIA L+KQFFRELP+P+L      A LK   L  T +   A  L   LL D  + VL+YF  F+  ++  S E+KM  SNLA+IFAPNL  +S   EK   N EK L+    +V  L   A  IG VPD +  K   M    G C++ S +  +    E PG        + KR R +S+  F+
Sbjct:    7 VRLALLQHLRAFYGIKVKGVRGQCDRRRHE---TAATEIGGKIFGVPFNALPHSAVP--EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPG--------EYKRKRRQSVGDFV 290
The following BLAST results are available for this feature:
BLAST of TCONS_00056643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHGBA2.877e-3536.33Rho GTPase-activating protein 11A OS=Homo sapiens ... [more]
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