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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056431 ID=TCONS_00056431|Name=TCONS_00056431|organism=Clytia hemisphaerica|type=transcript|length=810bp
ATTATACCAACAAAATCATTAACACAACAAACTCAAACTTCCACAGCTTT
AAAACAGATCTTCACTACAACAGAACCTGTACATACTaccaaaaagacaa
aaacagcGATAAAAACCGATCTACCAACAAAACAACATACGACAAAGGCC
AATCAAAACACAGGACATCCAACAGAACCATacacaacaacaaaaattta
tttagactCAACCTCCACAGAAAAACATCTCCAGCCAACAGAAAGCTCAC
AAGTTGGAAAAACGAATACAGCAGGAAATAAAGATAAACCAAATAGAATA
TTTGAAATAGTTTTCACAACTCTGATAGTGGTATTAATTGCATTGCTTGC
ATTTGCAGTGATTGTACGAAAAAGgcTTATTCAAAGGAACAAAGTACATT
CACCAGATATCAATCAAATGGTATCAAAGTAcagtgaaaacgaaagtgaa
agtacttCGTCATTAGCACACGAAGAAAACAACAATATAAAATCTTCTAC
GACTTTAACATGAAAAAGATGACGATCGAATAATACAAACGTAATTATCT
GATGTTACGCTTTGAGAGAAATCCTATTTGACCGAAGCTGTAGGTTGATT
TAATAATGTTGACCGCAATGGGAGAAATTCATTTAGATTGAAACTGACAG
AAAGAGTTCTATTTCATCCGAGAGATGTTTTCAGCGACAGTTCAGTTAAT
CAGGACAATTTCGATGGTGATCCAGAATGATGATGACGATTGCGATGACC
TGTTTGGAGAATTACCTTGACCAAAAGCCTAAAACTCAACGGCATTATGA
AAATAACGTC Run BLAST on NCBI protein sequence of TCONS_00056431-protein >TCONS_00056431-protein ID=TCONS_00056431-protein|Name=TCONS_00056431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
IIPTKSLTQQTQTSTALKQIFTTTEPVHTTKKTKTAIKTDLPTKQHTTKA
NQNTGHPTEPYTTTKIYLDSTSTEKHLQPTESSQVGKTNTAGNKDKPNRI
FEIVFTTLIVVLIALLAFAVIVRKRLIQRNKVHSPDINQMVSKYSENESE
STSSLAHEENNNIKSSTTLT Run BLAST on NCBI transcript from alignment at scaffold_276:405140..406411+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056431 ID=TCONS_00056431|Name=TCONS_00056431|organism=Clytia hemisphaerica|type=transcript|length=1272bp|location=Sequence derived from alignment at scaffold_276:405140..406411+ (Clytia hemisphaerica)
ATTATACCAACAAAATCATTAACACAACAAACTCAAACTTCCACAGCTTT
AAAACAGATCTTCACTACAACAGAACCTGTACATACTaccaaaaagacaa
aaacagcGATAAAAACCGATCTACCAACAAAACAACATACGACAAAGGCC
AATCAAAACACAGGACATCCAACAGAACCATacacaacaacaaaaattta
tttagactCAACCTCCACAGAAAAACATCTCCAGCCAACAGAAAGCTCAC
AAGTTGGAAAAACGAATACAGCAGGAAATAAAGATAAACCAAATAGAATA
TTTGAAATAGTTTTCACAACTCTGATAGTGGTATTAATTGCATTGCTTGC
ATTTGCAGTGATTGTACGAAAAAGGTAAGGATTTCTTTGTGTCAAGACCC
GGTGAGAGCCTGTCCTTAACTGGGGTATTTGAATCTCCGACCAGATTCTG
ATACTCCGATCATGACACTTATTCACTCTTAAAGGCCACGTAAGATTTGG
GATGAATAATAAATGAGCCTTCGAACGCTGTGATTGGCTTAAACAAAACA
ATCGCACCAAAATCAAAAACCAATCAcaaacataaacattagaatCTCGT
CGCTTTCATTTTCGTTCAAACTCGGTTTGGATTGTTACCGAACAGCCAGG
TCAGATTGTCAGATCATCAAGATTAGCCATATTAGCcatcttgcttgaga
aaggttagagattcctctctagcccttcaggctttaaactcaatggatgT
AACCCCTCCTGAGTAATGAAAGAACTCAGAAAAGACTGATACATGTAGTG
TTAAAAGACATCCTGaatcttcttttcaattttcaggcTTATTCAAAGGA
ACAAAGTACATTCACCAGATATCAATCAAATGGTATCAAAGTAcagtgaa
aacgaaagtgaaagtacttCGTCATTAGCACACGAAGAAAACAACAATAT
AAAATCTTCTACGACTTTAACATGAAAAAGATGACGATCGAATAATACAA
ACGTAATTATCTGATGTTACGCTTTGAGAGAAATCCTATTTGACCGAAGC
TGTAGGTTGATTTAATAATGTTGACCGCAATGGGAGAAATTCATTTAGAT
TGAAACTGACAGAAAGAGTTCTATTTCATCCGAGAGATGTTTTCAGCGAC
AGTTCAGTTAATCAGGACAATTTCGATGGTGATCCAGAATGATGATGACG
ATTGCGATGACCTGTTTGGAGAATTACCTTGACCAAAAGCCTAAAACTCA
ACGGCATTATGAAAATAACGTC Coding sequence (CDS) from alignment at scaffold_276:405140..406411+ >TCONS_00056431 ID=TCONS_00056431|Name=TCONS_00056431|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_276:405140..406411+ (Clytia hemisphaerica)
ATTATACCAACAAAATCATTAACACAACAAACTCAAACTTCCACAGCTTT
AAAACAGATCTTCACTACAACAGAACCTGTACATACTaccaaaaagacaa
aaacagcGATAAAAACCGATCTACCAACAAAACAACATACGACAAAGGCC
AATCAAAACACAGGACATCCAACAGAACCATacacaacaacaaaaattta
tttagactCAACCTCCACAGAAAAACATCTCCAGCCAACAGAAAGCTCAC
AAGTTGGAAAAACGAATACAGCAGGAAATAAAGATAAACCAAATAGAATA
TTTGAAATAGTTTTCACAACTCTGATAGTGGTATTAATTGCATTGCTTGC
ATTTGCAGTGATTGTACGAAAAAGgcTTATTCAAAGGAACAAAGTACATT
CACCAGATATCAATCAAATGGTATCAAAGTAcagtgaaaacgaaagtgaa
agtacttCGTCATTAGCACACGAAGAAAACAACAATATAAAATCTTCTAC
GACTTTAACATGAATTATACCAACAAAATCATTAACACAACAAACTCAAA
CTTCCACAGCTTTAAAACAGATCTTCACTACAACAGAACCTGTACATACT
accaaaaagacaaaaacagcGATAAAAACCGATCTACCAACAAAACAACA
TACGACAAAGGCCAATCAAAACACAGGACATCCAACAGAACCATacacaa
caacaaaaatttatttagactCAACCTCCACAGAAAAACATCTCCAGCCA
ACAGAAAGCTCACAAGTTGGAAAAACGAATACAGCAGGAAATAAAGATAA
ACCAAATAGAATATTTGAAATAGTTTTCACAACTCTGATAGTGGTATTAA
TTGCATTGCTTGCATTTGCAGTGATTGTACGAAAAAGgcTTATTCAAAGG
AACAAAGTACATTCACCAGATATCAATCAAATGGTATCAAAGTAcagtga
aaacgaaagtgaaagtacttCGTCATTAGCACACGAAGAAAACAACAATA
TAAAATCTTCTACGACTTTAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056431-exon-scaffold_276-1491911889:405140..405513 | TCONS_00056431-exon-scaffold_276-1491911889:405140..405513 | Clytia hemisphaerica | exon |
| TCONS_00056431-exon-scaffold_276-1510915933:405140..405513 | TCONS_00056431-exon-scaffold_276-1510915933:405140..405513 | Clytia hemisphaerica | exon |
| TCONS_00056431-exon-scaffold_276-1575043694:405140..405513 | TCONS_00056431-exon-scaffold_276-1575043694:405140..405513 | Clytia hemisphaerica | exon |
| TCONS_00056431-exon-scaffold_276-1491911889:405976..406411 | TCONS_00056431-exon-scaffold_276-1491911889:405976..406411 | Clytia hemisphaerica | exon |
| TCONS_00056431-exon-scaffold_276-1510915933:405976..406411 | TCONS_00056431-exon-scaffold_276-1510915933:405976..406411 | Clytia hemisphaerica | exon |
| TCONS_00056431-exon-scaffold_276-1575043694:405976..406411 | TCONS_00056431-exon-scaffold_276-1575043694:405976..406411 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:405140..406411 + |
Blast
The following BLAST results are available for this feature:
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