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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005629 ID=TCONS_00005629|Name=TCONS_00005629|organism=Clytia hemisphaerica|type=transcript|length=1026bp
TTGAAAGAAGGGAATATCTATGAGCTGGAGAATTTCTCAGCGTAGCCTTG
AATAACTTTAATGGCAACAGATGGAGCTGAAGATAAGTGTCGACTTTGTG
GTAAAAGAATTGATGGTGAAGTTGATAAGTGGTATGTTCCTTACCACTCC
AACTGTTTCAAATGCTCCAGTTGTAAAGTACCTTTAAATCCAAGGAATTA
TTTTTTAACCAACAAAAagcaattttattgttttaaacatTATGATCATG
ATGGCCCAGACAAGCATGGACATTTCTTCAGGGAACTTAAACAATTTCGT
AAATATTCTATCGAGAAATCAAAGACTTCGACAGTGAATGGGAAAACCTC
CCCTGTAAAAcaacattatcaaaaaaatgGACTCGTGAAATTAGATTGCA
AATGTTCAAGTGGAAAGTCTTCAGGTTATTGGTATGAGTGTACTTTCAGA
AATTGTCCTTCATCACAATGTTATCTTAAATCGAGAGACTTTAAACATTT
TCATGTGGCAACCTGGAAGATCACATCTGGTAAAAGCACAACACAAATTG
AACACAGTGAAGAAGAACTTTATGAGATGTGCTATCATGGACAGAGACAT
GCCAATTTTTATTCTGTAGATGAACGTATTGGTCCTATTGTATTGAGTTT
GAAGCATGAATCTATCATGAAAATCCCTTTTTACAGGATTCTTCTACGAT
CTTCATCACACATCACAGAAGGTTTAATCCCAACGACCTCATTCTGTTTA
AATGACTATGATGATAATGCAGTACTGGAAGTCATCAGTAGAGAATTGGA
CCTTACTTCAGACTTGAGACAATTCAATGATTCCATTCCACCTACCAAAT
TGCTCCTGTTGGATAAAgtGATGTTGAAAAGTGAATTCAAAATAGGTGTT
GTTTTCGTGGACAAAGATCAGCTCAAAGAGGAGCAATTTTTTACCAACAC
TACACACAGTGACGATTTCGAAGAATTCCTTACATACCTAGGCGAAAAGA
TATCATTGAAAGGATTCAATGGTTNT Run BLAST on NCBI transcript from alignment at sc0000054:240290..246830- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005629 ID=TCONS_00005629|Name=TCONS_00005629|organism=Clytia hemisphaerica|type=transcript|length=6541bp|location=Sequence derived from alignment at sc0000054:240290..246830- (Clytia hemisphaerica)
TTGAAAGAAGGGAATATCTATGAGCTGGAGAATTTCTCAGCGTAGCCTTG
AAGTAAGCCTATTATGAAATCCAAAGTCTTTATTCCATTTACAGTCGAGG
ATTATGCCCTAAATAAGAGAATACCCAAGTTAGAGGATTACCTTATTTAG
GAGATTTTCAGTCTCTTATTTAAGAGAGCGTTACCTAAACTAGGAGAATT
CTGTACGTTTCACAAATTTACTTCAGAGCAGACTATTTGCGCAATATGAA
AATAAGATCACGTGAAAGATAACGTTTCCGTGATTCCGATGACCCAAAAA
CCAAAATAAAATACCTTTTCATTCTTTTTCAAACTTCGAAAAACCATAAA
TAGCCTCATTTGCATGTGATGACGTAATTTTTAAAATAATGAAGAAACAC
CCTTGTCCTTTAAAACGCGTTTTTTCTAAAACCCCCTTATTTAGGAGAGA
CAAGAGCGACTCACTTTCTGTTTGACCCGCGTTTTGACCGCGCTTAAACG
CGTTTCTTAAATATGGCCCGATCTATATTATTACTTTTCACGAAATTCTC
ATGATGTAGATCGGCCTTTAGATTGGTAGAACCTAACCATCCTAGGTCCA
CGAAACAAAAGCAGAACTCAACCAAATTTTGCTAGAAGGGAGAAAAAAAC
GTGCTGAGTCGATCTATGAAGTTCAAAACTTGCGCAAAATGATGAGAAGG
CCAAAAATTAACGAAGAAAAAAAAGTCTCCTAGTTAAGAGAAAGAAATCT
CCTACTTAAGAGACCTTCTCTTAAATAGAGTATATCTCTTATTTAGGGCA
TAATCCTCGACTGATTTACTACGTGTCATGTATCTATCTCGCTCGGTTTC
TCTCCACCACGGTGTTCCACCGTAGAAGCAGTAGGTAAAAATGCACAATT
TAGTACGGTGGGAGGTTAGAGGAATGTAACTTTTTCAAATTTTTTTCTTT
CCTTCTTTTAGAATGATTTAGATATTTGAACATAAATATGATATGATATC
AATTTTAATTTTATGGATCTCTCCTCAGATAGTGGAAGTAATTTGATTTG
TGAAGAGTCTTTACGTCACATAGAACAAAAGAAAATAGCAAAAGAACAAG
GATTTTCCCATAGCCACCATTTCGCAACCATTGGGAATCGCAATTTTACG
GAAATGGGAATCCTCATATCAAATATTAAAGCATCTTCTGAAAATTTCAT
TCTTCCCCATAAAAATGCAAAAATGAAAAACGAAGAAGCTTCGTTTTCTG
ATCATCTTTTTACCATGACAGGCTAGCTCTAAAGCTCTAAAACAGCATCC
AATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTAAAA
AGTGTATATACTTACAAACATCAATATGTCTGATCTAACAAAATTTATAG
CAGCACTGTCATCATTGACAATAAAACAAACAATATTCTGTCAAGAGCCT
TGTAAACATTCCAACAACTTCCATCGAAATGATCTATCACAGCTAGATCT
ACCATTTTTAGCGCGGTCCGAGGTTTGAGCCGAGAATGCTCGCAGAACTT
TCATTCCTAGAACTTTTGCAAAAAAAAAGGAAAAATAGAAAAGTTGTATT
TTTTATTATTGCTCTATTCACATACTGAATTTGAAAGATCTACTATGTGG
CGTTTTTTTGCAAACTTCAAAAATTGAATGAAGTTTTTATAAATTGATTT
TTATTTTTAGCTTATGTGGATTTGGCAAAGTTGGTGAGTATGGCAAATTT
GGAAGTCAATTGAATTGGCTGTAGGTAACTAATTACTGACCTATCAAGAA
TCAAGGATATCTTCCTTGCAATGTATTTATTGCAATTATTTGCGGCTGCA
ACCAATTGCATCATATACAATGGATCAAAGATAAAATTTACTAAATACCA
GTCAAAGAATTCCCTCAATTTCAGTATACCACCATCACAGTAGTTTTCAT
TTGTGTTTAGCCTACAGGGTAATAACAAGTATATACGGGGTGCTGGTCCA
CAAAATCATGAACAAACATCGATTATCCAAAATGTAGAAAAAAGCTTGTC
TTTATTAAAAGAATAAAAATATTTCATCTGTGAGTTAAAAAATATGATTA
ATTATGTACAAAAATCGCCTCTTTTCTGTCTGAATTTTGAACTCTGTTTC
TCGTATACTAACTGTGGTTGTGTTATGAAAAATGTAAAAAAGTGAAGTAC
AGCAGTTTATACCTCAATTGCAGTAAAAAATACTACACACTAGTCAAGGG
AATTCCTCGACTGGATTAAAGTACCCTGTATATTTATTTGCATTAGGTAA
ATGCATTTGAGCTTTATATACCCTGGACCAAGTTTCTCAATCCTGTCCAA
GGAAAATCTTTGATAATTATGTTTTTTGAAAAATTGTATCCTAATGGCAG
CAACCACCTAATAGTGGTGTAAATGTATCGAGAGCACTAGGTCTAGCTCC
CTCAAATACTTTTGATGATGTAGCGCCGTTAGACCTTAATTTTTAACACT
GCAATGACTTCTTTGCTGGTCCCCCTTTAAAAAAGCTTGGTCCAGGGACC
AAGGTTCCACCATAACTTTAGTTCAATTTTCTTGAGACAGTTTTTTCCAA
AAAAATAATTTATTAATTAACATTTTCTGTCTGAAACCTTGCTCAGATAA
GAGAATGAAGAAGATTTAACTAAGAAAAATCTGAGTATGAATCTCTTGAA
TCAGCTTGAATGGGGAAAAGTTGGAAATGATACCAAGATTTAGCTCATTA
AAGTCGCCATTCATATATATGCAACAAGTAAGGTAAAGTGTAATTTACTT
TGAAAAAGAAATATTTGATAGTCTACTGTTCTTTAAAATACTTTTTTAGT
TGGAGCAATTCTCAGCTAATCCAGATGACCCAATTTCCTCATTTGTGTAT
TTGAAATATCTTTGAAATACCAACCAGACAGATGTTCTAATGGAGTTAAT
TGCCTTCAAAAATTATCATCTACCAGAAATTGTCATAAAATTGTGTCCTC
CCCCCCCCTTCAGTCCTGACAATTGGCGCCGGCATACGGCAAATGCCGAG
GCAAAAGCTGAATTAAATTGGATTATAGTGTGTTTGCGTCGGCAAAAAAA
ATGCCAAGGCAAATTTTTCAAAAGACTTTTACTAAAAATGATAACTGCCG
AAACAATCGAAGAACTGCAATGTAGCAGTGTAACGTCCCCCTACCTCCCT
TTAAATTGGGAGAAATGCCGAGGCAGAATCCTATTCTGCCGAGGCAAACA
GCAAATTTAGCCATTTGCCTCGGCAAAAAAATGCCGAGGCAAAAAAAATT
GAATTGCCAGGGCTGAACATTAATCTTAAAATCGCTTTTATTGTGCCAGG
GCTCAAAGCCAAAAGAAAAATAAGCGGGCGGAACCGCATTAAGCAGGACA
CTCCCTCATTTAAGCTTGTCGTTCCGAGTTCCGCTCGCATACCTTAGATG
TCCCGCATTTTCGAGAAAACTCAGAAATTCGTAGAACTCTTGGAAAAAAT
ATAGAAATGCTACTAAAAGTAAAAATATGTTTCCACAAGCACAAACTCAC
TTCTTTGTTTTTTCTCTTCGCTCCGTAGCGGTCCGTCCAATTGCGTNNNN
NNNTTAAAGATTAACCAATTTTTGTTCTATTTTGTCTACTATTCCTTTTG
CAGCAAAATTTTACGTTTGTGTCAGGTTGAAATTTGAGAAATTTACACAG
GTATATGGGGGGAACACTGATATTTTCAGAATTTTCTGGGGGGAAAGCAA
AAAAGAGGGGGGAAACTAAAAAACTGAAAAGTCATAGGGGGAAAAAAAAG
AGAGGGGAGATTCAAAAAAATCTTGTTTGGTGGGGGGAACAAACCCTGGA
GGACACTATGAAATTGTAGCATTGCTGGTAGCAGGCTGGTGTTCTTAGCT
AACTGCATTAGAAATTAGCTGTTACAAGTTAGATTGTTAAATTTATTGTT
CCAGAACTGGTATTTTAACCGAAAAAAAAAAATTTATTGAATGTTTTTAG
AAAGAAAGAGGTATTGGTCATTCATAAGCTTGGCATTTGAAATTGTGGTA
TTGAAGTTATTAGTCGGCACTTTTTCCACTCTATTTTCCAGCTACTTTTA
TTACACTGGGCTACACCAAACAAATAACCGGCTGATTGCCAAAAAAAATA
AAGCCTTTTTTTTAATTCAACACATTTTTGGTAATGTTTTCAGGGAATAT
TTCTCTTATATTTTTGAGTGGGAAATGAGGAATCAGACAGAATCAGAAGG
TCACTTTAGTTTTGATTTTTATTAATTTTTCTTAATATCAAAGCTAACTT
GGATTTTGATAAGGCTGTTCCTTAACTAAAAGTTACTTTAATAAAAGATT
AAAAACATAAATTTCTCTTTTGATTGCAGTCAGTGTTATTGTCCATCAGT
ATACAGTAAGAATTTAAGCTTATTAAAAGAAAGATGCAGGCAAAGAAGAA
AATTGTGCAATACCTTTAATCCTTTTTGATAAAACACCATTTAACTTTCA
TCTAATGTGTTAATAATATTCAAATTGAACCCTTACAAAAAGTAATTGTC
GCTCAAAATTACAAGTTGAATACAACTTTATTACTTCATTAAAAGTGTTG
CATTATTTTTATTCTTCGAAATCTAAATTTTTGTTATTTTATAACTATCT
AGCCTTTTTGAGCTGCTTTGGTTTATTCCCTCCAGGAGCAACCTACTGTT
CATTGATCATTCTACTTTTCTTTTTCTGTAATTATCAAAAAAGAAAGGAA
TTTCTAATTGAAACTGTCAACAATGGATATCAATTCAACTTGCTATTAAT
TTTTTTCAAAGGGGGGATATCACTTAATGGGCTTTGTCTTTTTTAATATT
GTTTTGTTGTGAAAGGAAAGCTCTTTTAAAATCGACTTTTTGAATACATT
AAGTTTGTAAATAAAAGAAAGACAGCAGTCATCAGTTAGAAGGTTGAGTT
TAAAAATATGATGATTTAATTGAAATGTAGAGGCATATTTTTGAACCTTT
GGTTAGGATGAAGTACTTACATGAAATCAAAGTTAATACTGACACTTCTA
ATGTATTTACAGTAACTTTAATGGCAACAGATGGAGCTGAAGATAAGTGT
CGACTTTGTGGTAAAAGAATTGATGGTGAAGTTGATAAGTGGTATGTTCC
TTACCACTCCAACTGTTTCAAATGCTCCAGTTGTAAAGTACCTTTAAATC
CAAGGAATTATTTTTTAACCAACAAAAAGCAATTTTATTGTTTTAAACAT
TATGATCATGATGGCCCAGACAAGCATGGACATTTCTTCAGGGAACTTAA
ACAATTTCGTAAATATTCTATCGAGAAATCAAAGACTTCGACAGTGAATG
GGAAAACCTCCCCTGTAAAACAACATTATCAAAAAAATGGACTCGTGAAA
TTAGATTGCAAATGTTCAAGTGGAAAGTCTTCAGGTTATTGGTATGAGTG
TACTTTCAGAAATTGTCCTTCATCACAATGTTATCTTAAATCGAGAGACT
TTAAACATTTTCATGTGGCAACCTGGAAGATCACATCTGGTAAAAGCACA
ACACAAATTGAACACAGTGAAGAAGAACTTTATGAGATGTGCTATCATGG
ACAGAGACATGCCAATTTTTATTCTGTAGATGAACGTATTGGTCCTATTG
TATTGAGTTTGAAGCATGAATCTATCATGAAAATCCCTTTTTACAGGTAA
TTAATTCCCCTTACAGATGTTTTGAGTCACAAACTAAGGGTCTACCCTTC
TCTAGCTGATAGATATCTTCAAAAGTTTTTTTATTCAGAAGACAGATAAT
GCACTCAGTGGCATAGATTGTGGTGTTCCTGGAGTATCAACCATACACCT
ATCTACCTGTACAGGACCAAGAAAGACTGATCTGATAAAATTTCTATATC
AGTTTTGGTCAAAACTATCAGTTTTGGTCAAAACTGATATAGAAATATAG
TCTATCTCTTGAATTTTTTCTTTTTGATTCTTTTTTTTTCTTCATTTAAA
TAGGATTCTTCTACGATCTTCATCACACATCACAGAAGGTTTAATCCCAA
CGACCTCATTCTGTTTAAATGACTATGATGATAATGCAGTACTGGAAGTC
ATCAGTAGAGAATTGGACCTTACTTCAGACTTGAGACAATTCAATGATTC
CATTCCACCTACCAAATTGCTCCTGTTGGATAAAGTAAGAAACAGATTGA
TCATTATAGTCCATTGATATGATGGTATTTGATGAGCACTCAGCCAATTG
GTCAATATAGTCCAATGGTATATGTAATAGTATTTGCACTCAACCCAATA
TTCCAAAATAAGATTGGTATATTTTATTCTGCTAAATCTGACTTTGCAAT
CTTAAATTGTAAAAATAATTTCTTTTTTCCAGGTGATGTTGAAAAGTGAA
TTCAAAATAGGTGTTGTTTTCGTGGACAAAGATCAGCTCAAAGAGGAGCA
ATTTTTTACCAACACTACACACAGTGACGATTTCGAAGAATTCCTTACAT
ACCTAGGCGAAAAGATATCATTGAAAGGATTCAATGGTTNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005629-exon-sc0000054-1575043694:246779..246830 | TCONS_00005629-exon-sc0000054-1575043694:246779..246830 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1575043694:241135..241768 | TCONS_00005629-exon-sc0000054-1575043694:241135..241768 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1575043694:240647..240827 | TCONS_00005629-exon-sc0000054-1575043694:240647..240827 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1575043694:240290..240448 | TCONS_00005629-exon-sc0000054-1575043694:240290..240448 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1510915933:246779..246830 | TCONS_00005629-exon-sc0000054-1510915933:246779..246830 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1510915933:241135..241768 | TCONS_00005629-exon-sc0000054-1510915933:241135..241768 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1510915933:240647..240827 | TCONS_00005629-exon-sc0000054-1510915933:240647..240827 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1510915933:240290..240448 | TCONS_00005629-exon-sc0000054-1510915933:240290..240448 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1491911889:246779..246830 | TCONS_00005629-exon-sc0000054-1491911889:246779..246830 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1491911889:241135..241768 | TCONS_00005629-exon-sc0000054-1491911889:241135..241768 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1491911889:240647..240827 | TCONS_00005629-exon-sc0000054-1491911889:240647..240827 | Clytia hemisphaerica | exon |
| TCONS_00005629-exon-sc0000054-1491911889:240290..240448 | TCONS_00005629-exon-sc0000054-1491911889:240290..240448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:240290..246830 - |
Blast
BLAST of TCONS_00005629 vs. Swiss-Prot (Human)
Match: SI1L2 (Signal-induced proliferation-associated 1-like protein 2 OS=Homo sapiens GN=SIPA1L2 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 9.274e-16 Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 571 YEMCYHGQRHANFYSVDERIGPIVLSLKHESIMKIP-------FYRILLRSS------SHITEGLIPTTS--FCLNDYDDNAVLEVISRELDLTSDLRQFNDSIPPTKLLL-LDKVMLKSEFKIGVVFVDKDQLKEEQFFTNTTHSDDFEEFLTYLGEKISLKGFN 1020
Y ++G+ H N++ +DE +GP+ +S++ E + YR+ R+S I E IP+T+ VLE + EL + LRQ ++S ++ LL LD+ L + KIG+++ Q EE+ + N T FEEFL LG+++ LKGF+
Sbjct: 487 YRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQC-LRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFS 651
The following BLAST results are available for this feature:
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