TCONS_00056536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056536
Unique NameTCONS_00056536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056536 ID=TCONS_00056536|Name=TCONS_00056536|organism=Clytia hemisphaerica|type=transcript|length=434bp
TCCTTCATGGGGGAAAAATTGGCTTATTGCTTATGAATCCAAAATAATCG
AAGACACGTTTCTATAATACTGAAACTCTATTCATAAGAAAAAAGAAGGG
AACCAAACCTCAAGAGATTTTTTTACTGGTATTTTTAAACGCTTGATCAT
CATTTGTTAACGGGAAAATGCTccacaaaattgattttagtatgaTTGAT
TCATTTAACCATGTTTACGCATGTTACAATTATATTTGGCTAGCTGCTAC
AAAAACCTTCGAACTATTAAAGACACCAGAAGAAagcaatcaaaaaatat
tttctgtccCAAAATCAACCTCCTAAAATTCAATTGGAAATATAgttttt
tgtaaagttttaatgTAGTAACATTCCAAATaatctaatgttttttttta
atataaatgaAGAAAAGTCTTTCttgatacagtt
Run BLAST on NCBI

transcript from alignment at scaffold_276:242437..242870

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056536 ID=TCONS_00056536|Name=TCONS_00056536|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at scaffold_276:242437..242870 (Clytia hemisphaerica)
aactgtatcaaGAAAGACTTTTCTtcatttatattaaaaaaaaacattag
attATTTGGAATGTTACTAcattaaaactttacaaaaaacTATATTTCCA
ATTGAATTTTAGGAGGTTGATTTTGggacagaaaatattttttgattgct
TTCTTCTGGTGTCTTTAATAGTTCGAAGGTTTTTGTAGCAGCTAGCCAAA
TATAATTGTAACATGCGTAAACATGGTTAAATGAATCAAtcatactaaaa
tcaattttgtggAGCATTTTCCCGTTAACAAATGATGATCAAGCGTTTAA
AAATACCAGTAAAAAAATCTCTTGAGGTTTGGTTCCCTTCTTTTTTCTTA
TGAATAGAGTTTCAGTATTATAGAAACGTGTCTTCGATTATTTTGGATTC
ATAAGCAATAAGCCAATTTTTCCCCCATGAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035616XLOC_035616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056536-exon-scaffold_276-1491911889:242437..242870TCONS_00056536-exon-scaffold_276-1491911889:242437..242870Clytia hemisphaericaexon
TCONS_00056536-exon-scaffold_276-1510915933:242437..242870TCONS_00056536-exon-scaffold_276-1510915933:242437..242870Clytia hemisphaericaexon
TCONS_00056536-exon-scaffold_276-1575043694:242437..242870TCONS_00056536-exon-scaffold_276-1575043694:242437..242870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:242437..242870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157679	0	0	0	0	0	0.202721	0.37957	0.132873	0.164585	0	0.210026	0.629204	0	0.268606	0.480425	0.473476	0.242649	0.838081	0.350796	1.06717	1.3385	1.80791	1.47929	0.507878	1.66199	3.45934	0.922976	0.700045	0.534926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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