TCONS_00056170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056170
Unique NameTCONS_00056170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=transcript|length=1614bp
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCtggttgatttaaaaaaaagctaatATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGCACATTTTCTTCTTCGACATTTACTacaaatcaaac
tttgaagagtgttcaaaagaaaaagaattgtgACTATCATTATAACGAAA
GATCTGATAAAAAAACTGCAAGCAAAATGTGTGACACAATGGCGTATACT
AGTGGACCTGTGCTTTATCACCAACGAGAAGTGGCCACTGAGGAATTACT
GCGACCAAAGATTGTGACTCCATTACCTCTTCAGTCTTCTGTTAAAGTTG
GCTCCGAATTCAAATTACTATGTCTTTTGACCGGTTACCCAACCATCGAG
ATCAATTGGTATTTGAACGGAGATCTTCTGGTGGAGACTGAAGACGGACG
AATTCGTTTTGATAACCATCAAAGATTGCTGGTGATTCGAGACTTGAAAC
CATCAGATGCTGGTTCAATTACCTTTCATGCAACCAACAAATACGGAGAA
GTAACGTGTAGTTCTCATTTGCAAGTCTTAATGACCAAACGTGAGAAATT
TGCGCATTCAAGGTATGGGAATTATTCGTTAAATTCGAGTAACTCACCAA
AGCCAATCCGACGTTTGTTACATGCGCTGAATAGGATGAAATCGTTTTAG
AGGGAAGACAGCAGATGAAGGTGATATCAGATTTTCAGAAGGAAAGTTGA
CCTTTGCAATCGAGAATCCACCATAGAATCATATAACGCTTTTCACCGAA
TATTTACAACGGCAACAAAGACTTTCTTAAGAGAGTGACAATTCACTAAA
TAACGACATCGCATCTCAAAAACTTTGACTTGAGACAATAAGGAATATCC
ATAGGATGTATAATGAGTGATTCTATATCGTCATGCTACTCCACACGATT
ATGATTCTTACCCACCATGCATAAACTAACCTAACAAATCCCGGGATTGA
AAAGATTTAAAACGAACTGAAAAGTGAATAAAATGGATAATAAAGAAACC
GCAAACCTCCAACCGTGCTATCTGACGTGAAAGGCGAACGAAGCTTTATG
TTACCCAAAGTTTGGCAATGTAAAATTGGGTGTAAAGCTTCGTGCCACTA
GCTGAGACAACTTCAATGGAGGGTGCAAGGTTGACGTAAAGCCTTGACCA
CACGCCGAGTGCATTCTAAAAGCGGGTGCCTCGATTCTGACGTATATGCA
ACGAACTATAGAAAAGACACctgctgaaaaattgaaagaatagACTAATC
ACTGGGTGtgtttgggtttgtttttaGCACCCAGCACATCTTATTATTGT
TTAAGTAAGACAATAAAAGAGCTTCTAAAATAATTAATAACGAAGGCTCA
ATAAAGACAATGGGGCCCTGTTGAGGGCCATAAATACCTTACATACAAAA
AAGAAGGGTCCTTTCGGGGACAAAAAAAAGCtattaataaacaaaaaaac
ttattttttccgNA
Run BLAST on NCBI

protein sequence of TCONS_00056170-protein

>TCONS_00056170-protein ID=TCONS_00056170-protein|Name=TCONS_00056170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEKNRWSTFSSSTFTTNQTLKSVQKKKNCDYHYNERSDKKTASKMCDTMA
YTSGPVLYHQREVATEELLRPKIVTPLPLQSSVKVGSEFKLLCLLTGYPT
IEINWYLNGDLLVETEDGRIRFDNHQRLLVIRDLKPSDAGSITFHATNKY
GEVTCSSHLQVLMTKREKFAHSRYGNYSLNSSNSPKPIRRLLHALNRMKS
F
Run BLAST on NCBI

transcript from alignment at scaffold_268:164265..166754-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=transcript|length=2490bp|location=Sequence derived from alignment at scaffold_268:164265..166754- (Clytia hemisphaerica)
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCTGGTTGATTTAAAAAAAAGCTAATATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTACAAAT
CAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGGTAAGTGTCATG
TTATCTTTTGTGATCTTTAAATCGCTCCTCAGTCATCAGTTTCGTTACTC
TGAAGGGATACTAATCATAATCATATAATTACTGCAACTACTTGGCTCAA
GAGCTTTTTGTCTAACAGGATTATTATTTGGGCTGGTTATAGCGTTCTAA
GTATACTATGTCACGGGACGAATGAAAGATTCAACTCTCAGAACTTAAAA
TTGCGTGGATGAAATCATTCGTTATATTCTACAGTATATCCGCACCTGGA
CTTCAACTTCTATTCATGTCCAACTTATTGATGAATGTTGTTTTATCAAT
GGTTGAAAGTGTGAATAGTATTCGTATGAACGTGTGGTATTAAGTTAATC
AAGTGATTATTCCACTTCTACAGCTTAAGAAATCACCTTATAAAACTTTA
GATGATGTTAAAATAGTGCTGTAATAAGAAACCTATTAACAAATCGCATG
AGCAAGCTCGTTTTTTGTATGTTTCAGTTCGTGCCTGTATGAAGAAAATA
ACGGTTCGCAGAGAGCTTTTTAGCGTTTATTTTTAGTTTTGCAAGCGAGG
GTGAGGTCTGCCAACCCATTGTACACAGAAGTCTTACATCTTTACCATTT
CTTTTGTAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAA
CGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATT
ACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTC
TTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGAT
CTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAG
ATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCT
TTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAA
GTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTA
TTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATG
CGCTGAATAGGATGAAATCGTTTTAGAGGGAAGACAGCAGATGAAGGTGA
TATCAGATTTTCAGAAGGAAAGTTGACCTTTGCAATCGAGAATCCACCAT
AGAATCATATAACGCTTTTCACCGAATATTTACAACGGCAACAAAGACTT
TCTTAAGAGAGTGACAATTCACTAAATAACGACATCGCATCTCAAAAACT
TTGACTTGAGACAATAAGGAATATCCATAGGATGTATAATGAGTGATTCT
ATATCGTCATGCTACTCCACACGATTATGATTCTTACCCACCATGCATAA
ACTAACCTAACAAATCCCGGGATTGAAAAGATTTAAAACGAACTGAAAAG
TGAATAAAATGGATAATAAAGAAACCGCAAACCTCCAACCGTGCTATCTG
ACGTGAAAGGCGAACGAAGCTTTATGTTACCCAAAGTTTGGCAATGTAAA
ATTGGGTGTAAAGCTTCGTGCCACTAGCTGAGACAACTTCAATGGAGGGT
GCAAGGTTGACGTAAAGCCTTGACCACACGCCGAGTGCATTCTAAAAGCG
GGTGCCTCGATTCTGACGTATATGCAACGAACTATAGAAAAGACACCTGC
TGAAAAATTGAAAGAATAGACTAATCACTGGGTGTGTTTGGGTTTGTTTT
TAGCACCCAGCACATCTTATTATTGTTTAAGTAAGACAATAAAAGAGCTT
CTAAAATAATTAATAACGAAGGCTCAATAAAGACAATGGGGCCCTGTTGA
GGGCCATAAATACCTTACATACAAAAAAGAAGGGTCCTTTCGGGGACAAA
AAAAAGCTATTAATAAACAAAAAAACTTATTTTTTCCGNA

Coding sequence (CDS) from alignment at scaffold_268:164265..166754-

>TCONS_00056170 ID=TCONS_00056170|Name=TCONS_00056170|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_268:164265..166754- (Clytia hemisphaerica)
ACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAACGAGAAGTG
GCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATTACCTCTTCA
GTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTCTTTTGACCG
GTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGATCTTCTGGTG
GAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAGATTGCTGGT
GATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCTTTCATGCAA
CCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAAGTCTTAATG
ACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTATTCGTTAAA
TTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATGCGCTGAATA
GGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATTTACTACAAATCA
AACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAACG
AAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGATGGAAAAGAATAG
ATGGAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAACGA
GAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATTACC
TCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTCTTT
TGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGATCTT
CTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAGATT
GCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCTTTC
ATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAAGTC
TTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTATTC
GTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATGCGC
TGAATAGGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATTTACTAC
AAATCAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATT
ATAACGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGATGGAAAA
GAATAGATGGAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCAC
CAACGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCC
ATTACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTAT
GTCTTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGA
GATCTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCA
AAGATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTA
CCTTTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTG
CAAGTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAA
TTATTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTAC
ATGCGCTGAATAGGATGAAATCGTTTTAGCACATTTTCTTCTTCGACATT
TACTACAAATCAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACT
ATCATTATAACGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGAT
GGAAAAGAATAGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035362XLOC_035362Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056170-proteinTCONS_00056170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056170-exon-scaffold_268-1575043694:166541..166754TCONS_00056170-exon-scaffold_268-1575043694:166541..166754Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1575043694:166167..166285TCONS_00056170-exon-scaffold_268-1575043694:166167..166285Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1575043694:164265..165545TCONS_00056170-exon-scaffold_268-1575043694:164265..165545Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1510915933:166541..166754TCONS_00056170-exon-scaffold_268-1510915933:166541..166754Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1510915933:166167..166285TCONS_00056170-exon-scaffold_268-1510915933:166167..166285Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1510915933:164265..165545TCONS_00056170-exon-scaffold_268-1510915933:164265..165545Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1491911889:166541..166754TCONS_00056170-exon-scaffold_268-1491911889:166541..166754Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1491911889:166167..166285TCONS_00056170-exon-scaffold_268-1491911889:166167..166285Clytia hemisphaericaexon
TCONS_00056170-exon-scaffold_268-1491911889:164265..165545TCONS_00056170-exon-scaffold_268-1491911889:164265..165545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:164265..166754 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.30469	2.58578	7.8827	7.11628	5.04592	3.0751	2.32386	3.71522	10.3108	5.84652	10.3297	9.86226	23.9079	15.7049	2.50094	2.62522	2.7147	2.39241	0.478096	0.646441	0.817935	0.926459	0.0895656	0.197018	0.702988	0.226415
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003599Ig_sub
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top