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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=transcript|length=1039bp
gaccgtaaagtgcgttaccgtaggcctgtacataacttgccaaagcaaac
catgcaagtgaaatcttatgtacaggcctacgatatcgcattgaacggtc
taaataaacacttgcttaacctAGCTAAATTGTTGGCACTCATTTGTAAA
TGTCTTCACGGAGTTGTCATCATGGAGCTGATGTCATGGAGTAGGTGGAT
CTTTAGCATATTCAATAACTTTCAACTTAGCTGTTTAACAGATAGAATTC
ATAAGGACATTACTACTACAGTGGTCCACCGACCAATTCAACCAGCAAGC
AAAGAAAATGGGGAGAACAAACAATCATGCCTCGTTACAAGTAGAGCTGC
TCTCATGACATAAACATAAACTTAGTAGGTTTTTAATTGAATCAATCGGT
CTCAAGAGACAAACCGCAAGCCATATCCGAAAACATGTcctccaaaatca
aaacaatagctTTTCTGTGTAACACATTCTTTGCAAACTCTTTGTAATCT
GCAAAGCCTATTATAACATACATGGGAAATGTTTGTGGCTTGTTTTGAAA
GCCTTAGTACTACTAGTATTTGTTTCCTAAAAACCTGCAAAGAATGTTTT
TACTTTATGCGGGACTTTATAACAATCCACTTGAAAAGGTCATAAAATAA
CTATTGTTCTCTATGTTATTCTGACCATCAATCTCTTGTTACTGAAACGA
AAGATGGAATCGATAGGCTCAAAATTGAAATTCGAAAGTATTTTCGCACT
ACTGTTAATATGATCCCAAATTAACGGtactcaatcaatcaatcaatcaa
tcaatcaatcaatcaatcaaaaacttcaacaaaaagaatgaacaacAATT
TCTTTGCAACCAGCAAAATCCACTTTTCTCAACAATTATACTGTTTCGTT
TCTTACATGGAAAACATACAGTTTATAATGGAATTACAATCTCATCGAAG
TATTAAGAGAGGAACTTCTTGCAACCGGAAACCCTCAAGCCTTGATCCAT
TAATTATATAACGACATGTTATAATCATCAATCAATTCG Run BLAST on NCBI protein sequence of TCONS_00056180-protein >TCONS_00056180-protein ID=TCONS_00056180-protein|Name=TCONS_00056180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
DRKVRYRRPVHNLPKQTMQVKSYVQAYDIALNGLNKHLLNLAKLLALICK
CLHGVVIMELMSWSRWIFSIFNNFQLSCLTDRIHKDITTTVVHRPIQPAS
KENGENKQSCLVTSRAALMT Run BLAST on NCBI transcript from alignment at scaffold_268:112772..113810 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=transcript|length=1039bp|location=Sequence derived from alignment at scaffold_268:112772..113810 (Clytia hemisphaerica)
CGAATTGATTGATGATTATAACATGTCGTTATATAATTAATGGATCAAGG
CTTGAGGGTTTCCGGTTGCAAGAAGTTCCTCTCTTAATACTTCGATGAGA
TTGTAATTCCATTATAAACTGTATGTTTTCCATGTAAGAAACGAAACAGT
ATAATTGTTGAGAAAAGTGGATTTTGCTGGTTGCAAAGAAATTgttgttc
attctttttgttgaagtttttgattgattgattgattgattgattgattg
attgattgagtaCCGTTAATTTGGGATCATATTAACAGTAGTGCGAAAAT
ACTTTCGAATTTCAATTTTGAGCCTATCGATTCCATCTTTCGTTTCAGTA
ACAAGAGATTGATGGTCAGAATAACATAGAGAACAATAGTTATTTTATGA
CCTTTTCAAGTGGATTGTTATAAAGTCCCGCATAAAGTAAAAACATTCTT
TGCAGGTTTTTAGGAAACAAATACTAGTAGTACTAAGGCTTTCAAAACAA
GCCACAAACATTTCCCATGTATGTTATAATAGGCTTTGCAGATTACAAAG
AGTTTGCAAAGAATGTGTTACACAGAAAagctattgttttgattttggag
gACATGTTTTCGGATATGGCTTGCGGTTTGTCTCTTGAGACCGATTGATT
CAATTAAAAACCTACTAAGTTTATGTTTATGTCATGAGAGCAGCTCTACT
TGTAACGAGGCATGATTGTTTGTTCTCCCCATTTTCTTTGCTTGCTGGTT
GAATTGGTCGGTGGACCACTGTAGTAGTAATGTCCTTATGAATTCTATCT
GTTAAACAGCTAAGTTGAAAGTTATTGAATATGCTAAAGATCCACCTACT
CCATGACATCAGCTCCATGATGACAACTCCGTGAAGACATTTACAAATGA
GTGCCAACAATTTAGCTaggttaagcaagtgtttatttagaccgttcaat
gcgatatcgtaggcctgtacataagatttcacttgcatggtttgctttgg
caagttatgtacaggcctacggtaacgcactttacggtc Coding sequence (CDS) from alignment at scaffold_268:112772..113810 >TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_268:112772..113810 (Clytia hemisphaerica)
TTATGTCATGAGAGCAGCTCTACTTGTAACGAGGCATGATTGTTTGTTCT
CCCCATTTTCTTTGCTTGCTGGTTGAATTGGTCGGTGGACCACTGTAGTA
GTAATGTCCTTATGAATTCTATCTGTTAAACAGCTAAGTTGAAAGTTATT
GAATATGCTAAAGATCCACCTACTCCATGACATCAGCTCCATGATGACAA
CTCCGTGAAGACATTTACAAATGAGTGCCAACAATTTAGCTaggttaagc
aagtgtttatttagaccgttcaatgcgatatcgtaggcctgtacataaga
tttcacttgcatggtttgctttggcaagttatgtacaggcctacggtaac
gcactttacggtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056180-exon-scaffold_268-1491911889:112772..113810 | TCONS_00056180-exon-scaffold_268-1491911889:112772..113810 | Clytia hemisphaerica | exon |
| TCONS_00056180-exon-scaffold_268-1510915933:112772..113810 | TCONS_00056180-exon-scaffold_268-1510915933:112772..113810 | Clytia hemisphaerica | exon |
| TCONS_00056180-exon-scaffold_268-1575043694:112772..113810 | TCONS_00056180-exon-scaffold_268-1575043694:112772..113810 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:112772..113810 . |
Blast
The following BLAST results are available for this feature:
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