TCONS_00056122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056122
Unique NameTCONS_00056122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056122 ID=TCONS_00056122|Name=TCONS_00056122|organism=Clytia hemisphaerica|type=transcript|length=389bp
TTCCATTCAAACTACCACACTTGTGATGTTGTTGAAAACAAACCTCCTTT
CACTAGAATCACTTTTGAGGTTAAAATTTGGTTTTGGAAGATGGATGTGT
TTGTTTCTTAGCTACAATTATCAGCAGATTTGAAGTGAAGCAAAAGAACA
TTTATCACCTAAACGCTAAAGCAAGATTTGATTGATGATTTACCGTTCCA
ACACGAGCAATTTTGTGTAACCATTGCGAGTATTGACTTAAAATTTCTTG
AACAATAAACATACAACTGTCGGCTGTTTGGCAGCCAcagtttatttctt
ttatttcaggCTCACTTTTTGGGCCATTTCAAGATATTGTCCAGTTGTCA
ACTGCAATTATTGGAGTCTATGCCTGGCTGAACAACTGG
Run BLAST on NCBI

transcript from alignment at scaffold_267:219499..219887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056122 ID=TCONS_00056122|Name=TCONS_00056122|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_267:219499..219887 (Clytia hemisphaerica)
CCAGTTGTTCAGCCAGGCATAGACTCCAATAATTGCAGTTGACAACTGGA
CAATATCTTGAAATGGCCCAAAAAGTGAGcctgaaataaaagaaataaac
tgTGGCTGCCAAACAGCCGACAGTTGTATGTTTATTGTTCAAGAAATTTT
AAGTCAATACTCGCAATGGTTACACAAAATTGCTCGTGTTGGAACGGTAA
ATCATCAATCAAATCTTGCTTTAGCGTTTAGGTGATAAATGTTCTTTTGC
TTCACTTCAAATCTGCTGATAATTGTAGCTAAGAAACAAACACATCCATC
TTCCAAAACCAAATTTTAACCTCAAAAGTGATTCTAGTGAAAGGAGGTTT
GTTTTCAACAACATCACAAGTGTGGTAGTTTGAATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035324XLOC_035324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056122-exon-scaffold_267-1491911889:219499..219887TCONS_00056122-exon-scaffold_267-1491911889:219499..219887Clytia hemisphaericaexon
TCONS_00056122-exon-scaffold_267-1510915933:219499..219887TCONS_00056122-exon-scaffold_267-1510915933:219499..219887Clytia hemisphaericaexon
TCONS_00056122-exon-scaffold_267-1575043694:219499..219887TCONS_00056122-exon-scaffold_267-1575043694:219499..219887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:219499..219887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.427984	0	0.369145	0.278777	1.98051	1.32214	1.1077	1.39528	0.272251	0.343486	0.257032	0.21927	0.14476	0	0.243603	0.421875	0.825501	0.22051	0	0	0.2825	0	0	0	0.211616	1.24486	0.508563	0.0991345	0	0.256367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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