TCONS_00056111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056111
Unique NameTCONS_00056111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056111 ID=TCONS_00056111|Name=TCONS_00056111|organism=Clytia hemisphaerica|type=transcript|length=535bp
TtcaaacagtcataactttttaaCATCTCAGTTCACAGACAGCTTTTTTG
GGGTTCGTACAAGAAGCGTAATACCATCCTTTCACACTGCCATAGTTACG
ACTCAACATACAATGCCAATCTGAATGTTGACCAGCATCTGGTTTGGCCA
CAGCTGACCAGTAACTTCCAGTAACTCTTTGTGTTTCACATAGATGAGCT
CCTCGACCAAACCAATACCACGCTCCTGAGTTGCCAACTTCGAATCCACC
AATCCAAACATCATTATCGAATCGATGCGACATGACAGATTGAACTTCCT
TGGTGTCAGCTCTGGCGAAATTTGTCTTGTTCCCTGGTTCAATGCTTTGG
CATTTCATCGCTTGCTCATGCCATGGTCTACGCGTATCAAGTTGTGTTAA
CCAGAGATTAGCGTTGACTCTGACCCATCGATGGTTCCAATTGGTTGGGA
AACAACCAGTGGGCTGTTGGTGGGATGAACCCAACGCTAGTGCTAAGCAA
ATTAATACTGCCAAAGACTTCATGGTGTTAAACTT
Run BLAST on NCBI

protein sequence of TCONS_00056111-protein

>TCONS_00056111-protein ID=TCONS_00056111-protein|Name=TCONS_00056111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
KFNTMKSLAVLICLALALGSSHQQPTGCFPTNWNHRWVRVNANLWLTQLD
TRRPWHEQAMKCQSIEPGNKTNFARADTKEVQSVMSHRFDNDVWIGGFEV
GNSGAWYWFGRGAHLCETQRVTGSYWSAVAKPDAGQHSDWHCMLSRNYGS
VKGWYYASCTNPKKAVCELRC
Run BLAST on NCBI

transcript from alignment at scaffold_267:19878..20412

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056111 ID=TCONS_00056111|Name=TCONS_00056111|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_267:19878..20412 (Clytia hemisphaerica)
AAGTTTAACACCATGAAGTCTTTGGCAGTATTAATTTGCTTAGCACTAGC
GTTGGGTTCATCCCACCAACAGCCCACTGGTTGTTTCCCAACCAATTGGA
ACCATCGATGGGTCAGAGTCAACGCTAATCTCTGGTTAACACAACTTGAT
ACGCGTAGACCATGGCATGAGCAAGCGATGAAATGCCAAAGCATTGAACC
AGGGAACAAGACAAATTTCGCCAGAGCTGACACCAAGGAAGTTCAATCTG
TCATGTCGCATCGATTCGATAATGATGTTTGGATTGGTGGATTCGAAGTT
GGCAACTCAGGAGCGTGGTATTGGTTTGGTCGAGGAGCTCATCTATGTGA
AACACAAAGAGTTACTGGAAGTTACTGGTCAGCTGTGGCCAAACCAGATG
CTGGTCAACATTCAGATTGGCATTGTATGTTGAGTCGTAACTATGGCAGT
GTGAAAGGATGGTATTACGCTTCTTGTACGAACCCCAAAAAAGCTGTCTG
TGAACTGAGATGttaaaaagttatgactgtttgaA

Coding sequence (CDS) from alignment at scaffold_267:19878..20412

>TCONS_00056111 ID=TCONS_00056111|Name=TCONS_00056111|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_267:19878..20412 (Clytia hemisphaerica)
AAGTTTAACACCATGAAGTCTTTGGCAGTATTAATTTGCTTAGCACTAGC
GTTGGGTTCATCCCACCAACAGCCCACTGGTTGTTTCCCAACCAATTGGA
ACCATCGATGGGTCAGAGTCAACGCTAATCTCTGGTTAACACAACTTGAT
ACGCGTAGACCATGGCATGAGCAAGCGATGAAATGCCAAAGCATTGAACC
AGGGAACAAGACAAATTTCGCCAGAGCTGACACCAAGGAAGTTCAATCTG
TCATGTCGCATCGATTCGATAATGATGTTTGGATTGGTGGATTCGAAGTT
GGCAACTCAGGAGCGTGGTATTGGTTTGGTCGAGGAGCTCATCTATGTGA
AACACAAAGAGTTACTGGAAGTTACTGGTCAGCTGTGGCCAAACCAGATG
CTGGTCAACATTCAGATTGGCATTGTATGTTGAGTCGTAACTATGGCAGT
GTGAAAGGATGGTATTACGCTTCTTGTACGAACCCCAAAAAAGCTGTCTG
TGAACTGAGATGttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035313XLOC_035313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056111-exon-scaffold_267-1491911889:19878..20412TCONS_00056111-exon-scaffold_267-1491911889:19878..20412Clytia hemisphaericaexon
TCONS_00056111-exon-scaffold_267-1510915933:19878..20412TCONS_00056111-exon-scaffold_267-1510915933:19878..20412Clytia hemisphaericaexon
TCONS_00056111-exon-scaffold_267-1575043694:19878..20412TCONS_00056111-exon-scaffold_267-1575043694:19878..20412Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056111-proteinTCONS_00056111-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:19878..20412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30593	0.742867	2.4644	2.41103	3.81576	2.20346	2.37855	1.83381	1.28389	2.15828	0.551284	1.15966	159.882	150.706	33.6169	75.9986	5.80044	4.27054	614.061	524.056	41.2464	37.2604	50.1613	49.1206	16.358	19.6046	0.895344	0.318512	0.72474	1.23066
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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