TCONS_00055858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055858
Unique NameTCONS_00055858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055858 ID=TCONS_00055858|Name=TCONS_00055858|organism=Clytia hemisphaerica|type=transcript|length=474bp
AGCTTTCGAATCACGATAAGAAGCTCCAGAGGGAGCTTGAGACTCACGAG
GTTCATTATCTTTCAAATAACGTATAGcagaattttttataagaaaaatg
tccGTATCAATATTTCCTAACCAGTTATCAAATTCAGAGACTTCATACAc
taatggttttaatttttcacaGACAAAAAGAAGCTCAACAAAAGCTCTAT
TCAACCCTTCAAGGGCATTTCTTACAAGATCGGTAGAAGAcctatttttc
aataaaagatcAATATTTTCTAGTCTTTCTGTAATTTCGGTAGTAAGTCT
TTCTCTTTGACgctcaaaaagttcaaaactaAATTCACCTTGGTCAGATT
GATTTTTGACCGGACGACGCTTAGTGACATTTCTATCCCAATCAGACATT
TTCAAAGGCACAGATATAAATGCCTAGCCTAATTGGATTTTCAACACTTA
AGTGATTAACATCCGATATTAATA
Run BLAST on NCBI

protein sequence of TCONS_00055858-protein

>TCONS_00055858-protein ID=TCONS_00055858-protein|Name=TCONS_00055858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MSDWDRNVTKRRPVKNQSDQGEFSFELFERQRERLTTEITERLENIDLLL
KNRSSTDLVRNALEGLNRAFVELLFVCEKLKPLVYEVSEFDNWLGNIDTD
IFLIKNSAIRYLKDNEPRESQAPSGASYRDSKA
Run BLAST on NCBI

transcript from alignment at scaffold_263:153066..153539

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055858 ID=TCONS_00055858|Name=TCONS_00055858|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_263:153066..153539 (Clytia hemisphaerica)
TATTAATATCGGATGTTAATCACTTAAGTGTTGAAAATCCAATTAGGCTA
GGCATTTATATCTGTGCCTTTGAAAATGTCTGATTGGGATAGAAATGTCA
CTAAGCGTCGTCCGGTCAAAAATCAATCTGACCAAGGTGAATTtagtttt
gaactttttgagcGTCAAAGAGAAAGACTTACTACCGAAATTACAGAAAG
ACTAGAAAATATTgatcttttattgaaaaataggTCTTCTACCGATCTTG
TAAGAAATGCCCTTGAAGGGTTGAATAGAGCTTTTGTTGAGCTTCTTTTT
GTCtgtgaaaaattaaaaccattagTGTATGAAGTCTCTGAATTTGATAA
CTGGTTAGGAAATATTGATACggacatttttcttataaaaaattctgCTA
TACGTTATTTGAAAGATAATGAACCTCGTGAGTCTCAAGCTCCCTCTGGA
GCTTCTTATCGTGATTCGAAAGCT

Coding sequence (CDS) from alignment at scaffold_263:153066..153539

>TCONS_00055858 ID=TCONS_00055858|Name=TCONS_00055858|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_263:153066..153539 (Clytia hemisphaerica)
ATGTCTGATTGGGATAGAAATGTCACTAAGCGTCGTCCGGTCAAAAATCA
ATCTGACCAAGGTGAATTtagttttgaactttttgagcGTCAAAGAGAAA
GACTTACTACCGAAATTACAGAAAGACTAGAAAATATTgatcttttattg
aaaaataggTCTTCTACCGATCTTGTAAGAAATGCCCTTGAAGGGTTGAA
TAGAGCTTTTGTTGAGCTTCTTTTTGTCtgtgaaaaattaaaaccattag
TGTATGAAGTCTCTGAATTTGATAACTGGTTAGGAAATATTGATACggac
atttttcttataaaaaattctgCTATACGTTATTTGAAAGATAATGAACC
TCGTGAGTCTCAAGCTCCCTCTGGAGCTTCTTATCGTGATTCGAAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035172XLOC_035172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055858-exon-scaffold_263-1491911889:153066..153539TCONS_00055858-exon-scaffold_263-1491911889:153066..153539Clytia hemisphaericaexon
TCONS_00055858-exon-scaffold_263-1510915933:153066..153539TCONS_00055858-exon-scaffold_263-1510915933:153066..153539Clytia hemisphaericaexon
TCONS_00055858-exon-scaffold_263-1575043694:153066..153539TCONS_00055858-exon-scaffold_263-1575043694:153066..153539Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055858-proteinTCONS_00055858-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:153066..153539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33878	2.4805	0.909503	0.889807	0.180542	0.142667	0	0	0.112817	0	0	0.178324	0.534229	0	0	0	0.100502	0.103011	0	0	0.129441	0	0.921013	0.697779	0.143739	0.128284	0	0	0.148594	0.151394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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