TCONS_00055810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055810
Unique NameTCONS_00055810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055810 ID=TCONS_00055810|Name=TCONS_00055810|organism=Clytia hemisphaerica|type=transcript|length=636bp
TGGCTCAATATTTAGCTTCTCAAACAGTGAATCGGTTGTTATTCTGTACA
AAAATACATGTGAGCGATTGATGCGACACATCGAACGNATGGCCCAACCA
GGACAATTGACGATTGAAAACATAATACTCAATTGGCTCAATATTTAGCT
TCTCAAACAGTGAATCGGTTGTTATTCTGTACAAAAATACATGTGAGCGA
TTGATGCGACACATCGAACGTAAACAAGAATGGTGAAAGTTGCGTAGTAG
ACGTAACAGGTATTCAGTTAAGCACCATGTTTCTGCCCCATAGATTAGAA
TAGGAAGAATCAGTGACTTGTAAACAGTGCTTTTAGCTTCTTCGATAGAG
CGAGAAGAAAAGATTGACTTTTTTAGAGCGTCAAAAGCGTTGCCAGCCTT
TTTGATGCGATTGGTGACATCGATTATATCTTTACAGTCCCTGGATATGT
AACAGCCAAGGTAGCAAAACTTGTCACAAATGGGGAAGTACGTATACGTG
GACAACTTAATTGGAGAAAGATCGGTGTTGTCATAACTTGTGGGATCATT
ATATGATTTAGGAGGTTTCGAGACGAACAGGACTTCAGATTTTGAAGCTT
TATCTGGGCAACGGATATCACCAACATGGATTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00055810-protein

>TCONS_00055810-protein ID=TCONS_00055810-protein|Name=TCONS_00055810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
EIHVGDIRCPDKASKSEVLFVSKPPKSYNDPTSYDNTDLSPIKLSTYTYF
PICDKFCYLGCYISRDCKDIIDVTNRIKKAGNAFDALKKSIFSSRSIEEA
KSTVYKSLILPILIYGAETWCLTEYLLRLLRNFHHSCLRSMCRINRSHVF
LYRITTDSLFEKLNIEPIEYYVFNRQLSWLGHXFDVSHQSLTCIFVQNNN
RFTV
Run BLAST on NCBI

transcript from alignment at scaffold_26:116443..117078

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055810 ID=TCONS_00055810|Name=TCONS_00055810|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at scaffold_26:116443..117078 (Clytia hemisphaerica)
TGGAAATCCATGTTGGTGATATCCGTTGCCCAGATAAAGCTTCAAAATCT
GAAGTCCTGTTCGTCTCGAAACCTCCTAAATCATATAATGATCCCACAAG
TTATGACAACACCGATCTTTCTCCAATTAAGTTGTCCACGTATACGTACT
TCCCCATTTGTGACAAGTTTTGCTACCTTGGCTGTTACATATCCAGGGAC
TGTAAAGATATAATCGATGTCACCAATCGCATCAAAAAGGCTGGCAACGC
TTTTGACGCTCTAAAAAAGTCAATCTTTTCTTCTCGCTCTATCGAAGAAG
CTAAAAGCACTGTTTACAAGTCACTGATTCTTCCTATTCTAATCTATGGG
GCAGAAACATGGTGCTTAACTGAATACCTGTTACGTCTACTACGCAACTT
TCACCATTCTTGTTTACGTTCGATGTGTCGCATCAATCGCTCACATGTAT
TTTTGTACAGAATAACAACCGATTCACTGTTTGAGAAGCTAAATATTGAG
CCAATTGAGTATTATGTTTTCAATCGTCAATTGTCCTGGTTGGGCCATNC
GTTCGATGTGTCGCATCAATCGCTCACATGTATTTTTGTACAGAATAACA
ACCGATTCACTGTTTGAGAAGCTAAATATTGAGCCA

Coding sequence (CDS) from alignment at scaffold_26:116443..117078

>TCONS_00055810 ID=TCONS_00055810|Name=TCONS_00055810|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_26:116443..117078 (Clytia hemisphaerica)
GAAATCCATGTTGGTGATATCCGTTGCCCAGATAAAGCTTCAAAATCTGA
AGTCCTGTTCGTCTCGAAACCTCCTAAATCATATAATGATCCCACAAGTT
ATGACAACACCGATCTTTCTCCAATTAAGTTGTCCACGTATACGTACTTC
CCCATTTGTGACAAGTTTTGCTACCTTGGCTGTTACATATCCAGGGACTG
TAAAGATATAATCGATGTCACCAATCGCATCAAAAAGGCTGGCAACGCTT
TTGACGCTCTAAAAAAGTCAATCTTTTCTTCTCGCTCTATCGAAGAAGCT
AAAAGCACTGTTTACAAGTCACTGATTCTTCCTATTCTAATCTATGGGGC
AGAAACATGGTGCTTAACTGAATACCTGTTACGTCTACTACGCAACTTTC
ACCATTCTTGTTTACGTTCGATGTGTCGCATCAATCGCTCACATGTATTT
TTGTACAGAATAACAACCGATTCACTGTTTGAGAAGCTAAATATTGAGCC
AATTGAGTATTATGTTTTCAATCGTCAATTGTCCTGGTTGGGCCATNCGT
TCGATGTGTCGCATCAATCGCTCACATGTATTTTTGTACAGAATAACAAC
CGATTCACTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035135XLOC_035135Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055810-proteinTCONS_00055810-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055810-exon-scaffold_26-1491911889:116443..117078TCONS_00055810-exon-scaffold_26-1491911889:116443..117078Clytia hemisphaericaexon
TCONS_00055810-exon-scaffold_26-1510915933:116443..117078TCONS_00055810-exon-scaffold_26-1510915933:116443..117078Clytia hemisphaericaexon
TCONS_00055810-exon-scaffold_26-1575043694:116443..117078TCONS_00055810-exon-scaffold_26-1575043694:116443..117078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:116443..117078 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.716283	0.936665	0.914508	1.12404	0.882877	1.08883	1.30519	1.36159	0.483428	1.03421	1.1565	1.47502	1.25641	1.62737	1.6298	1.59189	2.22046	2.68427	5.42776	3.55496	3.13337	6.53652	3.40721	3.53402	2.7198	3.8999	0.45571	0.364759	3.81566	4.14761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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