TCONS_00005438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005438
Unique NameTCONS_00005438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005438 ID=TCONS_00005438|Name=TCONS_00005438|organism=Clytia hemisphaerica|type=transcript|length=2556bp
CAGGTGATCAAGAAACATTAATAAACACAATGGTAATTAGTTACAAAGCA
CTAATGAAATAGATATTAAAACAATATATATTATGTTTTATGGCGTCTTG
TGGATAACTTAAAGTTGTCCTAAATACAAAACAATTCGCTGAATGGCTAG
CAAAAGTGGGagGAACAAACAAGACCCAGCAACGATATATTCAATCCAGG
AACGCATTGGAAAGGGATCATTCGGTGAAGTATACAAAGCAATCGATACA
AAGACTAACCATGTCGTTGCTGCAAAGATCATTGACCTGGAGGAGGCGGA
AGATGAGATAGAAGATATTCAACAAGAAATCACCGTCCTCGCACAATGTG
ACAGTGAATATGTCACCAAATATTATGGATCTCACCTCAAGGGCACTAAA
TTATGGATTATCATGGAATATTTAGGAGGTGGTTCAGCGCTCGATCTGAT
GAAGGCTGGTCCTTTTGATGAGCTGTACATTCCCATCATTTTACGAGAAG
TTTTAAAAGGCTTAGAATACTTACACTCAGAACGAAAATTACATAGAGAT
ATCAAAGCTGCAAATGTGTTATTATCAGAACACGGTGCAGTGAAGTTAGC
AGATTTCGGTGTTGCTGGCCAACTAACGGACACAATGAATAAACGAAATA
CTTTTGTTGGGACACCTTTTTGGATGGCCCCAGAAGTGATCAAGCAATCT
GCATACGACGCCAAGgctgacatatggTCTCTTGGGATTACAGCAATTGA
ATTAGCGAAGGGCGAACCGCCCCATGCAGAATTACATCCGATGAGGGTGT
TATTTTTAATACCGAAAAATAACCCGCCAGAATTGACTGGTGCTAATTTC
ACTaggaattttaaagattttgtttcgTCATGTCTACATAAAGACCCGAA
CGAGcgTCAATCAGCAAAAGAATTACTACGTCACCGTTTTATCCGTCAAG
CAAGAAAGACGGGGGTATTGGTAGACCTAATAGACAAATTCCGTAGGTGG
CGTGCAAACGGGGGTGATGATATGAGGGATGATGATGAAACGAATAGTAT
ATTgtgagtgcaattttttaactGGTTCCAAACTCTTTTGATATTGCCTT
AAAGGTTTTAATGACATCAGTATGAACTTTAAATTCTCATAACTTTGTAA
TGGAAGACATGCTTctcccatagatttataaagcccgaagggctttttgc
tgaaaagtgtgccgtagtTAGGTAaaaaatcctacctaggtcacgtgaca
ttacaattgaatttcagcgcttgaccaatcagaagctttgcgggctttcg
aaaacaatagcagtaatattttttgcgatattcactttttttacttggaa
gagcttaaagcacgatatctaacacttcgggctttacaaatcTGTGATTT
CTCCCTTAATTTTCATCAGACTTCTgtgctctttcagatggtaccgtcag
tgaaaattttcagaacaaTTAATTATTGACTAGCCATCCGATGATGTTAT
CTGGCAGGTAGCCGAGTAGCGTATAATTTGGTGTTACGTCTAAAGATTTT
TGATTCATAGTCCCCTATGAGGGCAATCTATGTGAAATTCCAGCCCTTTC
TGCTAAGAGACTGATAAGTTTAAGTAGCTTTCAGTAAAAGACTAATTTTT
AAACGCGATTTTTCTCTACTCTCTTTCAATAGGGGTGATTCGGCTGGCAA
TGCCGATACAACCGACCCCTGGATATTTACTATCAAGGCGAAGCCAGGGA
ACAAACAGAACGCCCTAAATAAAATACCGCCATCAAATACTAATTCGAAC
GCCACAACACCGCCCGCAAACAAGACGAAGAGTAATAATCGTTCGGAGCA
GCAGAACAATGCAGTGGTGGCACCACGGGCGCCTGAATCGAGATCTCTTC
ATAATATACTATTGCCAATTCTAGGACAAtTAAAAGGCAAACACCAGAAT
CGAGCGTCTGCGATTGACGATCTAGAAAATGCAATCCTGGTGGCGGAGAG
GACTTCTCCTGGTATATGTGACGCGTTTATCGGTGAAGTGACTGACATCG
TTCGAAGcCACTTTAATCACCTTTCTAACGACACACAACTAATGTACTAA
CCGACTGTTTACTATGACACGACACAATGACGTAATGACGTTGACGTAAA
CATTTAATTTTATGATATCCTGGTAGAAGAGAGACGTGATAGTGATGACA
TGTTCTATTTAGTATATGTTCTAATAgttctaatagaccttttcataaat
tacgtcacgaacatcacttgcctcgtattcgaacaatttccatggtgatc
atatcccttgagacattaaatgatttttttattaatagaaagtagtttta
ataaaatccgctgggagttaatcaccatggcaataatttcaaaacgaggc
aaatgATATTCGTGACttgatttatgaaaaagtctattaGGAGATGCATC
CAtgggctgcgtttagaccagcctggcatttgtaattgcttgcagtattc
ttttgaattctattgttccgcgcaattgttcggtttgtcaaatgcctaat
gatgcc
Run BLAST on NCBI

transcript from alignment at sc0000053:690564..706248+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005438 ID=TCONS_00005438|Name=TCONS_00005438|organism=Clytia hemisphaerica|type=transcript|length=15685bp|location=Sequence derived from alignment at sc0000053:690564..706248+ (Clytia hemisphaerica)
CAGGTGATCAAGAAACATTAATAAACACAATGGTAATTAGTTACAAAGCA
CTAATGAAATAGATATTAAAACAATATATATTATGTTTTATGGCGTCTTG
TGGATAACTTAAAGTTGTCCTAAATACAAAACAATTCGCTGAATGGCTAG
CAAAAGTGGGGTAAgtttattattatattttaaagatttcCGATAATGGA
ACCCTACCCATGCACCTATGACACCATACTCTTACCTTGAGGAaagtttt
tattcaaattttaaattgatttaGAAGCCTGATGAAGGTTGCTAGTAAAT
TTTCTATGCTGATTTAAGAAGACAAGAAGTCAAAGTGGCATGAAGGCCCA
GTGATATAGtaattgattattgattgattatCTGTACACTGATTGCTACT
AGGCGTCATGGTGtcaccccccccccactttaagtgggggtacctaaaaa
aaaaaggggttaaaaaagccaggtacctggaagtattcccactttcaggg
ggtacctgatATGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaataaataaataaataacgaTATTGCATTTTTGCTGA
CCAAGCGTTTCTATCATAACAAACATGGTAGCTTGAagttgttatatttt
tttataacttGCGAAAATCTTTTGGATGCAGTTCCATATACGTTATTTGA
TTGTATGTAAtttagtatattttttaatttgtttcactgcatgaaaagtc
gtcttctctaacgcaagatatatgacgaaaagttaacttttctctgagtt
ttcttgttttgaaatcattgaattttCTTCTGTGCGAAAACAAGTAACAG
TGAATCTTCACTATTTCTcgaaaagcttaaattttctaaatatcgACATA
ATTAACTTTTCGATGTACAAAATGATTACATTTTTAGCCACGAAAAGTAC
TACTTTTCTCTGAAGTAAAAATATTGGACTTTCTCCACGCAGTGAAGATT
CACTTTTACTTGTTTTCTTGTCCATGGAaatgtcaaattcaaaattgaga
aaagacgaaccttttttgtaaaaaaaataacgaaattcATTTAATGAAAG
GAAAGattaacaatttattatttacgCATTTTCGAAAAGATGCAGATGTC
TAGATCAAATAACCAACGTTTCGTTATTGGGAATATATATTCTaacttaa
aaaaatacttgatccgcctcatttcataacattgaaaaggtaaaaaactt
ctacacgttttttttttataaggaaccttaactttgctctgagcctggag
ttccttatttttacagagaatttcagtctcaaagttccttatcgatcTCC
TTATttcataggaaattttgaactttttgccccttgaaagatcaaaattt
ggtcaaattagtctcaactaaggtacattattttcaaatccacttattct
cagcctgagcagttccttattttttgaaccattttcagcctcgagttcct
tataaacgtgttccttataaaaaaaaaaacgtgtaatatagaaattatat
ttctgGTTACTGTAGCGACAATTAGACGCGAGATTAAATTCGATAAGATa
ttgaattattaaatattcttggatgattttcttctttaaaatcaaagtca
atattaaaaaaatcatattaatATCTATGTACTCATAATTCTTTTGCTAA
AAATCTAAAGTATGCCTTATTTACataaaatgacataaattaATAAGATA
ATGTATGATAATAAATCatgatatataatttttaaaacaatggcAATAAT
TAATGTGGTATAGAAGGAGCTTATAGGGTTGGgggatatttctgacaaaa
tttgacattgtaaagcatttttcgaatttaagaaataagatTTAGGTTAC
GGCTCAAGAAATTGTATTCgtataaaaaatgatgaactaatTAATAAAAG
AAGTAAAACAATTACTCCTTCAGTTGTATATAGTGCCTCTTTTCCCGAGG
GCTCTCCGATTCTCCGTTTATTGAAGCATTGAAGatgtttcttttgttgt
gtTGTCGAACAATCATCTTTACTTCTTTTTCTTAATACCATTTATTTCTT
GGTCTTCTGATGAGACGATGTTCATTTTGTGATAAGTTTTCTCCACACGT
CTTTGACATTGCACAGAATTGATGTTTCGGCCTCCACCGTCGAGCTCGCG
ATACGTTCTTCGACTTTCTGTagagagaaaatgataaaaattatactcta
ctttttaaacaggattatcaaacagattaattgtccatttatttttattg
aaaattaaattgaactttaaattgaaaataactattaaaaatccaaaatt
acTTGAAGAAAACATAATAGCAAGAAAGAAATTACGCGTTTTAGACaggt
tatttcaaaaataacttgaaCGAGTGAGTACTTACATGATCATTGCATGG
CCTCTTTAGCATTATTGACGCATATTCATCGCAAAGTCTTTACTTGTTTC
ACTGTAAAGTTCGTGTGAAAGCATATTACAAGATTTCGtgacaaatcaaa
tttctttccctcttttaatttctgccaattaaaatctctttatcaacatt
tttctataagagacttaattggactgcaattgaaaatatcgtaatttctc
cacaattataaatgtgttaacacaGGGTCCCAAAGGGAATGGTGTTGTTT
AGTTCAAAGtgttaattgtaattttttgatgaaaccgccgaacaaatttt
tcagcctttgaaatatcgCCAAAAAAGAGAAACTAGGAATCGTTCTTTTC
TTCCATCAAGTTAAAGCATTTGAgtttaattttaacaagtttaattaATT
GAACTGCTTTTAGGAGCTCTTCGAACACACCACTGCCCCAAGTTTACGAG
AATTAGTTAACGCGAAAACTTaatactacatgtttttttataagaacaaa
ctatataagaacacaaggcttaaaaggccaaaatgttaagaacaagttaa
gaatatttcaaggctttgggaactcaaaaacacccgatttcttaggaaaa
tggccataaatactcataaaatgggggggggataagaacatattaagcaC
ATTTTTTAGGCTCATTTCCGaaggcaaaaattttggatgttcttataaaa
acgtatCGATGAATAGATTTTACCGGTATTTTTGTAAAGATTAAAAATTC
CAAAGAATAAATTCAGGCGAATTTTCAGCTATAGCATCACCTAAAACTTT
TATGTTAATAATGAATTAATGAGTTAATAATTTTATGTTAATgcgtataa
aatcaaaaaaacaattttgcataCAATGCATTAAAATCAANNNTCGCCGC
AGTTGGATaaacaattctttcaaaatcccaatggggatagaatttatata
ctttttgagtTCAAAAATATAGTGGGATGATTTTGAACGCAAtttcttaa
atataatttttatatggggatgaattcaaagtcaatttcccagtggggct
gaaatgatagggtatttttcaTCAGAGGATGaagtttttgctaaattttc
cagttggTTGTGGTTCTATGTGTAAAAAAGTTCCacaggggctgtgagac
agggatgtattgaGTTTCTTTAAAAGTAGTGCCACAAATTTTACAAGAGG
TTGCGCGAAATGTGGTTTGCACTTTCAACAGTTGTTGATCTGACTATatt
gtcaaaattaaagatttaaaagaaaaatctagaatttgaaaaatctgtat
ATCATAGAGTACAAAGAGAgctaattacacccctgtcacaGTGAAACAGA
CCCGGTGGAGCTTGTCCCACTATGGGGAGAAGTTTATACAGTGCAATTTC
TAAGCGGAGACGAAACAAAGTAAAAAATGTAGGACATTTCTTTCTCCTTT
CGCCTTAAAACTTCTAATTCTAAGGTGCGAAAAAGAAAAGTGGCAGCTAG
TTTGGTCAACAGAGGACACCTCTTCTTTTTCCTGTCATCACGCTAACAGG
CACAGGGGTCATtggaaaatataatattttttaattaaaaaataatcttg
tcAATCAAAAGATCAATCCTAAAGAACACATTCTCATTTTGCtcccataa
aattgaaatatttgtttTACTTTTGCCAAATCAGCTGCAAGAAAATCTGC
TCCTTACTTTTATCCCGGCATAGAGATTATAATGTTctttaaaaacgaaa
ttattacctttttttattgtatttgatgattgtattttcgataaattctg
catgaaaatttgatattttcatgaaaaatattttcgtttaaatttcaaga
cgaaaactttatattttcttgaaatacaaAGGAAGAAAAGATAGTCAATC
TGGAAAcatgaaatatttcctttttaatgaaaaacgacaaaagaaattat
ccaccttttcgaagcaagaaatatttaaagattatcttttttcaagaact
taaagaaaaagaatcttttcttaaaactgtaaggaaaaatcgatatttcc
gcAATTGTACGTTCGAAAACATTAAGTTTTCAAGGACAAGAAACTGGAAA
GACATATATTTCATGCAGTGTTTTCATATTAATAATTTTCACCTATTTTG
GATATTTGTTTCTTCACATGGATTTGTGGGAAAAGACATGTCTTACTCTT
GTGTGTTCTTTGAATACTTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACctaaaaaacataattt
aatGGGGGTACCAAATCCTGGGGGCTACCTAAGAATCCAAACAactttgg
gggtacctaaatcgTTGGGGGTACCTAATTTTATTGGGAGTACCTGAAGC
CTGGAGGACCCTATGGGCGTCGTTACTTACAAAATGCACTTGAATTACCC
TGAATTAACAATAAGATCTATTGAAAAGACAAcgtatttcttttgtttag
agGAACAAACAAGACCCAGCAACGATATATTCAATCCAGGAACGCATTGG
AAAGGGATCATTCGGTGAAGTATACAAAGCgtgagtacacgtttttttta
taataacatccaaaaattttgaagccgatgttcttaactttttgagtttt
agtcctaaaaatgttcttagtatGTTCCTATTTccccattttttatgtat
ttttgtctatttttccaagaaattggctgttttagagtccgcaaagcctt
aaaatgttcttaacttgttcttaacatttttgccatgatcgaagccctat
gttcttatatagtttgttcttataaaaaaaggagtagtttctcaaaaatt
agatttttacaCAAATAAGCAAAGAGCCCTAAGaattggattttttattt
tatctggGAAGGGTTTTCAAAGCTTGCCAGTTTGTTTTCCATAACATACC
TTTAACTTTTCACAAAATGCTGCAATATCATCAAAAAGTCGAGCAAAGCC
GATGTAAAATCCTTGTCCGATAATATAGATACAAGTAGAAAAAGATACTG
AATTATTTGGCCCtcctttaaaattaataaagggGTTACAGGCCATATTT
TTAAAAGGCCGGGCACTGCAAGTTCAAAAAGGGCGCTTTTTTAGTGTTCT
TTTGAAAGGCTATTTTAGTCAGGGATCCTCCAGTCATTTTTCAAGTCTTA
CTAATAATTTTTGTATTGGTGAAGTGATTACGAAAATTGAAGTCCTGGCT
GACTCAAAATCTTTCCCTTTTGCCTCTATTTCAGAATCGATACAAAGACT
AACCATGTCGTTGCTGCAAAGATCATTGACCTGGAGGAGGCGGAAGATGA
GATAGAAGATATTCAACAAGAAATCACCGTCCTCGCACAATGTGACAGTG
AATATGTCACCAAATATTATGGATCTCACCTCAAGGTCTGTGTGATATTT
CTCataaggcgtacaaactttcgcaaaagtaaatgtcgtaattttcgtga
tttttcgaCCTCTCGAATTTGTACGCCTAAAAGTGGTTAgtcttagtttt
tttttctgattgaaAAATCCCCAACCTTACAGTATAATGTTCCTTACTGT
ATAAGTATGATCGATGAAAGAGAAAAGTTGCTGGCAGTTTTGACCAACAA
ATgtagctttttttttaaatttaataataaaggttttaaaaaatgaaagc
gTAGACTGTTCAGCTTCNTAATTTAATAATAAAGGTTTTAAAGAATGAAA
ACGTAGACTGTTCAGCTTCTTGAATAAAATGAAACTGCTGAAAAACTCGA
AACATCCCCTCCCCATATGGtatgatttttggacctacctggaggtccta
taaattaacctgtgtccgTCCATTCATCTGGTACCAAcgtttctcgggat
tgaatcaaAGGAATTTTGCAAAATGGTGATTaccaaatgtgacggagccc
gattttcaaaaaagaaagtcTTTGGGCCATTTTGGgcccaaaaatagggt
tttttggactttgtgaaaaatctgttcattagtttttcctaattttatGT
ACAAAGACGTAGAATATTACAGTGTCCTAAATCTGGCTAAATTATATATG
AAAAAGCtaatttttcgagaaaaaagatttttggcaccaacttgcaaaat
tttaaattattcagtTTTTGTTTCTCTATTGCCTTcattaaacttttatt
attcgttttataaacagGTATTTCCATAAAAGTATTGCTTGCTTAAcgaa
tgaaaattcaaaaatgaacttgTGTTCTTTTTGGTTTAGGGCACTAAATT
ATGGATTATCATGGAATATTTAGGAGGTGGTTCAGCGCTCGATCTGGTAA
GTTTAAAATTATTCCCATACTTCTCTTATTCTTACAAGGGGTACCACTCT
ATAAAAGACGAATCAAAGCGTTTGTTGTTTGTCAATTTATTatgttcaaa
attttatgaaaagcGACTCTCAGAGAGACactgaaaagtgaaaatttcag
TACGAAAAATTTCAGagcgaaaaatcgaaaatcgacccttagaaagagga
aaaataggCGTTTTTTGGGACCTTAAGAGAGACTTTTGCcaaaatttttg
ttgattttcacaCGATTCttgtccaaattttttaaaatcaggACCTTTTG
AGAGAGGtaatttcgattttcgtgaattttggacCTTTACAGAGACTCGA
TTtgcttttcaatgttttttgtacctctttgagagactttcgagcgtgtg
aaaaatggacccttatggctcgcacatacccggcacccattatGTCTAAG
TCCCCCCCCTCCCCCAGGTCAGTAGTTCATTTTCATGTTGTGtgaaaagt
tcttccgtctGGTCTCATTGAAGTCGTgtttatcattcttttcacttTCC
TTTCAGATGAAGGCTGGTCCTTTTGATGAGCTGTACATTCCCATCATTTT
ACGAGAAGTTTTAAAAGGCTTAGAATACTTACACTCAGAACGAAAATTAC
ATAGAGATATCAAAGgtatataagaaaaatagagaaaaacaaatttgcaa
TTCATTTAGTATGCAATCATGCAATTTTCAGAAATTGCTACTTTGTGGGA
TATCTATATCTTCATTATTTTCACTTCAAAAATTCTATACACAATGCTTA
TTCAAACTTCTACCGACTTTTGATAGATTCCCACTTGTCTAgtttaattt
gaaaaagtatGCACTGTTTAGTTTGCTGGACTCTCATTCGATACGAGTTT
CTCATTTCATCTATGGAAGTTTTTTTAATACTTTTGTTGTAGTATCTACG
AAGATAACGTGAATAGAAGCCAGCAAAGATAACAAACACAAAAAGGCGGG
CCAACCTACCAGGACactttgttctttctttttcatacgTCCTTCAACTa
acaaaatttccttttttccagCTGCAAATGTGTTATTATCAGAACACGGT
GCAGTGAAGTTAGCAGATTTCGGTGTTGCTGGCCAACTAACGGACACAAT
GAATAAACGAAATACTTTTGTTGGGACACCTTTTTGGATGGCCCCAGAAG
TGATCAAGCAATCTGCATACGACGCCAAGGTAGACAATCTTGTACTTTGT
GTAGAACATCGACACCGTCAGCTTTATCGTACCTTCGATCCAAGTTTTAA
TCTCATCATATATAATAcataaatgttgaaaattttcatcattttgtacA
TTTACACTANTAAGGTAGAGAATGTTTTACTTTGTGAAGAATATTCcaat
ccccgggggggggggcactcgatctgaaaacgaccatacgttcggcccaa
aatttggcttctaaaatcagacccttacagtgcattgaatttccatgaaa
aatcatacccttacagtgcactttttcaaaatttttgcaattttccaaga
aaatgtggaatttttcctccaaaattgaccaattttgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgtgccccccccccccgggttccaATCGTAGCTAG
CTTCGAAGCCAAAGTTTCAATATAACATGATAAATAATGGCACGAAATGC
TTTCTGcatttacaatgaaaattacacTGAATTAAATAATAGTTGCTTAA
CCAGACTTTTATAAATCAGGTATCGCAAACAGTAAGTGGCAAACTTCGAA
TGTCTGTACTCTTTATcatttttaggctgacatatggTCTCTTGGGATTA
CAGCAATTGAATTAGCGAAGGGCGAACCGCCCCATGCAGAATTACATCCG
ATGAGGGTGTTATTTTTAATACCGAAAAATAACCCGCCAGAATTGACTGG
TGCTAATTTCACTaggaattttaaagattttgtttcgTCATGTCTACATA
AAGACCCGAACGAGGtgtgacattttttttcttctgttaAATCAATAATC
TGTTGGTTTGATTTATGACCCCTTAGTGACTTCCGCAGATCTTTGTTAAG
AGAGAGTTCATCCATAATTTGGCTTTTTTTGTACCCACTCTGTCCACACT
CGTCATTCATTCACTTCTGCTGCATATAAAGTTCTTTAGtaagttaaagt
ttttcacATGGTGGTAAGCTCCCTCTTTGCTTACGTTAAATATAAGTCAA
AATATGAATCTATTCaactctcaaaaaaattttatgatGCGTTGGAATTC
TGgtggtattcatgatatgcacctttgcaatgtcttccgcggacccaaca
gctgattgattgaaagtgacgtaatatcaatcaatacgtcactttcaacc
aatcagctgttgggttcgtggaagacattgcaatggtgcatatcatgaat
tgaaaagtttgataataaaaacatattctgaatttaattatttttattta
gcgTCAATCAGCAAAAGAATTACTACGTCACCGTTTTATCCGTCAAGCAA
GAAAGACGGGGGTATTGGTAGACCTAATAGACAAATTCCGTAGGTGGCGT
GCAAACGGGGGTGATGATATGAGGGATGATGATGAAACGAATAGTATATT
gtgagtgcaattttttaactGGTTCCAAACTCTTTTGATATTGCCTTAAA
GGTTTTAATGACATCAGTATGAACTTTAAATTCTCATAACTTTGTAATGG
AAGACATGCTTctcccatagatttataaagcccgaagggctttttgctga
aaagtgtgccgtagtTAGGTAaaaaatcctacctaggtcacgtgacatta
caattgaatttcagcgcttgaccaatcagaagctttgcgggctttcgaaa
acaatagcagtaatattttttgcgatattcactttttttacttggaagag
cttaaagcacgatatctaacacttcgggctttacaaatcTGTGATTTCTC
CCTTAATTTTCATCAGACTTCTgtgctctttcagatggtaccgtcagtga
aaattttcagaacaaTTAATTATTGACTAGCCATCCGATGATGTTATCTG
GCAGGTAGCCGAGTAGCGTATAATTTGGTGTTACGTCTAAAGATTTTTGA
TTCATAGTCCCCTATGAGGGCAATCTATGTGAAATTCCAGCCCTTTCTGC
TAAGAGACTGATAAGTTTAAGTAGCTTTCAGTAAAAGACTAATTTTTAAA
CGCGATTTTTCTCTACTCTCTTTCAATAGGGGTGATTCGGCTGGCAATGC
CGATACAACCGACCCCTGGATATTTACTATCAAGGCGAAGCCAGGGAACA
AACAGAACGCCCTAAATAAAATACCGCCATCAAATACTAATTCGAACGCC
ACAACACCGCCCGCAAACAAGACGAAGAGTAATAATCGTTCGGAGCAGCA
GAACAATGCAGTGGTGGCACCACGGGCGCCTGAATCGAGATCTCTTCATA
ATATACTATTGCCAATTCTAGGACAAGTGAGTGTTGTTGTCTCGGTGATA
CCTTAAGTTGGtataatgtcgacatccctcatctaattccgacatcCTGC
TTTGGAGCTGTGAATAATGAGAAGGtgggaatcgctgattgacacTATGT
TATACTTTGCTTAGCAGTCAGAGaggaaaaatattctttcaatcagtgat
tctgaccctCTTATTATCGTTAataaagggtgtcggaattagatgaggga
tgtcgacattagaccaacttaaggTATTAAGTGATACTGCTTGCTTTATT
CATTCAAATGAATATCTTTTCGAGATATATAGAAATCTTGCAGTCTACGT
TCTCATTGTTGCAAAGGTATCGTTTGAAATTATTATTGCTGGTTATGAAC
TTTTGTCCTTTGTTATTTTAAAACAAtgcaaactcgaacccagtccctta
gttcgctATTCATCTTTCTCCAAATTTTGTATCAAGTCCATGAGTAAAAT
NGACTTTTGCTGTTTATGAACTTTTGTCCTTTGTTATTTTAAAACAAtgc
aaactcgaacccagtcccttagttcgctATTCATCTTTCTCCAAATTTTG
TATCAAGTCCATgagtaaaatcaaatcaaacccAAAGTCATTTTAGTCTT
GATTCGAAGTTGTGACAATtattcaattttcttattttttctttacagtT
AAAAGGCAAACACCAGAATCGAGCGTCTGCGATTGACGATCTAGAAAATG
CAATCCTGGTGGCGGAGAGGACTTCTCCTGGTATATGTGACGCGTTTATC
GGTGAAGTGACTGACATCGTTCGAAGGTGAGAAAAATGAACCCAATATGA
TGcacaaaaaaacattataataTTGCACACGTTTAATTCTCACTGGAAAA
CATTCAATTCTACCAGCAGTGTGGACTTTTTtgcccccttttttaaaaga
tgATGGATTTTAGATATTATTATTATGAGAGAAATggtttctttttgtaa
tttattGACTTTTTGATGTCGACCGTGATGCGAGTTCAACATgctgaaaa
tcgaaaaaaactgtGATGGCATTATCTAGTCAATGTCAATGTCATTGACT
AAATCATATCATTGAATTGACCGAAAAAGTCAAAGAATGTtatactattt
tgaaattttgtgtaAGACATCCAGGAAAAGGTTATAGGTACATTTTTGAA
TTACTTGTGAGTCAACGAACTTTGATCCAGATAGTTGTTAAATCTGGCTT
CAAGTTTCGATTTTAAAAAGTCACATTTAGCTTTTGTACCTTTCTTCATT
TAAGTTTACATATATaatggagtctctttaactcgaacctctataactcg
aatgtctctttaactcgaacaagtatTATGGTCCCTTTAGAACAAATTta
tgttccccgtgcgtgttcaagTTGTGGAGACTTCACTGTAGCTATAAAAA
AGTTGAACCTAGATGAACTTTGATTTGGAGCAATTTTTGAGGGCATTTAA
ACACATTGAGTTTCAAATTTCCTGGATGTTTGTACTTAAATGACCACGAC
TTGTTGTATAAAAAGTATATTATTTTACTGTCctgttttaaaagaaaata
gaaatagcttgtttgactttgtataaaaaaacattttttcaaaacggAAA
AAAAATAAGGGAATAGATAAAATATTTCGTTAAATCCATCATTGTCTTTT
CTTTTGCTTCATTCTTCCAACTCATAATTTTCATGCcgtaatgttttcta
tggaaaCACTCCAGTTTTTTCCAGGAGTGGCGAATgttaaacaatttttc
aatagattaaagatttttacataagtgttcctgtttcatatcagacacat
atttcatatcaagaCAGTGTCTGCCTGATAtcattgtgctgatataagca
agaaatgtttttcttttcctctttctaaccAATCTTGTTCCACGTCCGtg
ttagtagggggaattttgttcgattttttggaatcgcttgactgttttgt
tagaagcacttgttatacatttttggaaagctaaggggtaggagaatcga
aattactatgtttccaattttttttcggacactttggtttgattttcaga
caaatatgacggtctcaggcaaaaatcatagggttaaaaattaatgaaaa
ttttagctcgagaaaaaagagacctgttgtatatttttggaaatctctca
aaaaattaagattagagatatattgcaagtataggtgatttctgtaccta
actcgagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTAttcttgcaatatatctctaatccta
attttttgagagctttccaaaaatatacaacaggtctccgtttcctcgag
ctaaaattttcattaatttttaaccctatgatttttgcctgagaccgtca
tatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttccaaaaatgtataacaagtgcttctaacaaaacagt
cgagcgattttacaaaatgccctctactatgtcaatccaatgtgaaaaag
cttgtgaattaaaattgatgaataagcaaaTGACATCACtcttatctaaa
aacaaaacctttaaatttgcCACTCCTGGCAAAAACCGGGATGTTTCCGT
ACAACACATTACGTCACAAATacaatgaatttctttgtttgtttgcaCAC
TTTTCATGCATCATCGTTGCACATCATGTATAAATCAATTAGGTAAGGta
gatgtgtttttttttctttatcgtCGAAATTTTTCACTTGAATTTTGAGA
AGTTTCTAATCGCTTCCATCTTGATTTAGGGTTTTTTGATGCACTATTTT
CTTATTGTTTTCGATAGTGGAAAAAAAGGTTTTCACGTAAAAGTTAGTAA
AGAATATCTAGAAGATAAGATAGTGGGCggactattcatgatatgcacca
ttgcaatatcCTCGACGGACCCagtagctgattggttgaaagtgacaacc
aatcagctgttgggtccctgatataatgtcagaagacattgcaatagtgc
atatcatgaataatagGGCCCACTGAAAATTAATCCATCATTTGCGAAAG
TTTCGGTTTTTTACAAATATCTTTCAATGAATTAACAAGAGACTTTCTAA
GTGTAAACAAATCatgattttcttttctatttttagcCACTTTAATCACC
TTTCTAACGACACACAACTAATGTACTAACCGACTGTTTACTATGACACG
ACACAATGACGTAATGACGTTGACGTAAACATTTAATTTTATGATATCCT
GGTAGAAGAGAGACGTGATAGTGATGACATGTTCTATTTAGTATATGTTC
TAATAgttctaatagaccttttcataaattacgtcacgaacatcacttgc
ctcgtattcgaacaatttccatggtgatcatatcccttgagacattaaat
gatttttttattaatagaaagtagttttaataaaatccgctgggagttaa
tcaccatggcaataatttcaaaacgaggcaaatgATATTCGTGACttgat
ttatgaaaaagtctattaGGAGATGCATCCAtgggctgcgtttagaccag
cctggcatttgtaattgcttgcagtattcttttgaattctattgttccgc
gcaattgttcggtttgtcaaatgcctaatgatgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003097XLOC_003097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005438-exon-sc0000053-1491911889:690564..690723TCONS_00005438-exon-sc0000053-1491911889:690564..690723Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:690564..690723TCONS_00005438-exon-sc0000053-1510915933:690564..690723Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:690564..690723TCONS_00005438-exon-sc0000053-1575043694:690564..690723Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:696214..696293TCONS_00005438-exon-sc0000053-1491911889:696214..696293Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:696214..696293TCONS_00005438-exon-sc0000053-1510915933:696214..696293Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:696214..696293TCONS_00005438-exon-sc0000053-1575043694:696214..696293Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:696998..697148TCONS_00005438-exon-sc0000053-1491911889:696998..697148Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:696998..697148TCONS_00005438-exon-sc0000053-1510915933:696998..697148Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:696998..697148TCONS_00005438-exon-sc0000053-1575043694:696998..697148Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:698003..698059TCONS_00005438-exon-sc0000053-1491911889:698003..698059Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:698003..698059TCONS_00005438-exon-sc0000053-1510915933:698003..698059Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:698003..698059TCONS_00005438-exon-sc0000053-1575043694:698003..698059Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:698620..698728TCONS_00005438-exon-sc0000053-1491911889:698620..698728Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:698620..698728TCONS_00005438-exon-sc0000053-1510915933:698620..698728Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:698620..698728TCONS_00005438-exon-sc0000053-1575043694:698620..698728Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:699135..699292TCONS_00005438-exon-sc0000053-1491911889:699135..699292Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:699135..699292TCONS_00005438-exon-sc0000053-1510915933:699135..699292Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:699135..699292TCONS_00005438-exon-sc0000053-1575043694:699135..699292Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:700539..700727TCONS_00005438-exon-sc0000053-1491911889:700539..700727Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:700539..700727TCONS_00005438-exon-sc0000053-1510915933:700539..700727Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:700539..700727TCONS_00005438-exon-sc0000053-1575043694:700539..700727Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:701215..702239TCONS_00005438-exon-sc0000053-1491911889:701215..702239Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:701215..702239TCONS_00005438-exon-sc0000053-1510915933:701215..702239Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:701215..702239TCONS_00005438-exon-sc0000053-1575043694:701215..702239Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:702912..703039TCONS_00005438-exon-sc0000053-1491911889:702912..703039Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:702912..703039TCONS_00005438-exon-sc0000053-1510915933:702912..703039Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:702912..703039TCONS_00005438-exon-sc0000053-1575043694:702912..703039Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1491911889:705750..706248TCONS_00005438-exon-sc0000053-1491911889:705750..706248Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1510915933:705750..706248TCONS_00005438-exon-sc0000053-1510915933:705750..706248Clytia hemisphaericaexon
TCONS_00005438-exon-sc0000053-1575043694:705750..706248TCONS_00005438-exon-sc0000053-1575043694:705750..706248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:690564..706248 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0490662	0.219431	0.760666	0.117895	0.145746	0.0572111	0.10276	0.596023	0.218624	0.264551	0.648516	0.180292	0.219555	0.241943	0.13245	0	0	0	0.182691	0.5512	0.466208	0	0	0.15641	0.174772	0.264879	0.0760796	0.233361	0.21438
Blast
[Close]
BLAST of TCONS_00005438 vs. Swiss-Prot (Human)
Match: STK26 (Serine/threonine-protein kinase 26 OS=Homo sapiens GN=STK26 PE=1 SV=2)

HSP 1 Score: 413.69 bits (1062), Expect = 1.744e-135
Identity = 212/284 (74.65%), Postives = 252/284 (88.73%), Query Frame = 2 
Query:  164 NKQDPATIYSIQERIGKGSFGEVYKAIDTKTNHVVAAKXXXXXXXXXXXXXXXXXXTVLAQCDSEYVTKYYGSHLKGTKLWIIMEYLGGGSALDLMKAGPFDELYIPIILREVLKGLEYLHSERKLHRDIKAANVLLSEHGAVKLADFGVAGQLTDTMNKRNTFVGTPFWMAPEVIKQSAYDAKADIWSLGITAIELAKGEPPHAELHPMRVLFLIPKNNPPELTGANFTRNFKDFVSSCLHKDPNERQSAKELLRHRFI-RQARKTGVLVDLIDKFRRWRANG 1012
            N  DP  +++  ERIGKGSFGEV+K ID +T  VVA KIIDLEEAEDEIEDIQQEITVL+QCDS YVTKYYGS+LKG+KLWIIMEYLGGGSALDL++AGPFDE  I  +L+E+LKGL+YLHSE+K+HRDIKAANVLLSE G VKLADFGVAGQLTDT  KRNTFVGTPFWMAPEVI+QSAYD+KADIWSLGITAIELAKGEPP++++HPMRVLFLIPKNNPP L G +FT++FK+F+ +CL+KDP+ R +AKELL+H+FI + ++KT  L +LID+F+RW+A G
Sbjct:   16 NIADPEELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLVG-DFTKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKKTSYLTELIDRFKRWKAEG 298
The following BLAST results are available for this feature:
BLAST of TCONS_00005438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STK261.744e-13574.65Serine/threonine-protein kinase 26 OS=Homo sapiens... [more]
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