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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055769 ID=TCONS_00055769|Name=TCONS_00055769|organism=Clytia hemisphaerica|type=transcript|length=3897bp
tgGTGGATAACTTGGGCCCAGACCCCCTTTTACCCCCAGTTCAATGTTGG
ATAAGACTTGGTAAACAATAGCAAGCCTTTCCCACCCATCAACATTGATT
TTGGGGGTGAAGGGGGGGATTTTTTTTATCTCAAAGGTTTTTGCCGAATA
TTTTGTCCAACATTGTCTGAATTTTGAAAAAAAAATTGAAAAGGGGAGGG
ACACACTAGGAAAAATGGGCACAAAAAACAAGCGAAATAAGGCATATTGA
GCTTACATATACTATTTACATAACTCTCCAGACATCCCAGACAAGTTTTT
CACCACAATATttactttttgaatgaaaaatatcaGTTACATCATAATCA
AGTCATTACAAGCCTCAGGATGACCTGCTAACCACAAATTTCACTTAGAA
AGAAAGTGCCGTGACCCATGTGGTCCTTTATGTCCGGAGTTTTACCTATC
CGGATTTTTGACTACCGGATTCAAAACTAAGATGGTAGCTATTGTTGCGC
AATATTATGCAATTTCATTACACGAGGTGTGAAGGCCTGTCTGGGGGCAT
GTCTGGAGTTCCAAAAGTGGAAAGTCCTATGTTTTAAAACTTCTATGTAC
ATGGTAACTTCTATTTAAAATAATATGCTCTATTTTAGataataaaagtc
aaaaactaaataaaGTAAAGCACAAGATGGCTGAAGTTGGTTCTCGGTCT
GTTTATTTGGTGACTTACAGTCAAGCGGACAGACAAAAGTGTGAAAGCGC
AGAAAAATTTGCAGAAATTATCACCGCAGCttttgaaaattgcaaagttt
taCAATGGGCAAGTTCAGAAGAATCACATTCAGAGGGGGGTTTCCACTAT
CATTTGGCACTTAAATTTGATAGAGTCAAACGTTGGAAGAAGGTGAGAGA
CTTCATTCAGCAGAGGTATGATATTTGCGTTAATTTCAGTAACAGTCATG
AGAATTATTACAGTGCGTATACCTATGTGATTAAAGAAGGCAGCTATGTT
TTGAGTCAAAATCACCCAGTCTACACAGGATCTCCGAAAACGGGCAAAGC
TTCTCGCAAAAGGAAGGAAGGCAGGAGTGAATCAGATGAAAGTTCAGCAA
GTTGTTCCAGGTCGAGAAGGTCGATCACAGTTTTGGATGTACATGAGATG
ATTGTAAAGCAGAATGTTAAGACTGATGATGAGTTATGTAGGCAAGCGAG
TAGAGAAAAAGCAGATGGGAAAGTTGACTTGGCTGAATTCATATTGAAGA
AGCCAGAGAACAGGCGTCGCGAATTGATAAAAACTGCCTGGAAAATTGAA
AACGCAGAGAAAGCTTGTGACCGCAAGGGCATGTCCataattgatatttt
tgaagcGACCGGCCAATTGGAATGCTCTTGCCCAGAGTATTGCAAGTGGT
ATGAGATGGCAGGTCAGGTCCTTTACAATAATGATATCGATATCACAAAA
TTTGCTGCAGGCATCTATAACGCGCTATCCCAAGGCCGCAGAAAGTTTGC
GAATTTCATGATCACTGGACCTACAAACTGTGGGAAAACATTTTTACTTA
TGCccttgacaaaaattttcaacacttttctCAACCCCGCATCTGGAACT
TTTGCTTGGGTAGGAGCAGTCACCTCTGAAGTTGTTTTCCTGAACGACTT
CAGATGGAGTGAGAAAATCTTGCCCTGGCACGATTTTCTCAATTTGTTGG
AGGGTGCACCCATTCATATCTCTGCCCCGAAAACACACTACGCAGAAGAT
CTCCTGTGGGACAAAAAACAGCCGGTTTTCAGTACTGCGAGTCACGAGAT
AATTAAGAAGTTCATCAGCGGTGACATTGATGAAAGGGAAACAGAGATGA
TGAAAACCAGATGGAAcgttttcaaattgaaatatagAATTGATGAGAAA
GACGCGGTAATCATTGAACCCTGTGCAAAATGCTTTCATTCGCTCATCGA
TAACTTCAGAAGACTCTAAAAGCGCTCTTTCGCTGCTTTTTTTTCCTTTG
TTGTGTTTATATTGTTTACGTTATAAGGATTTGCAAAAATGTTCAGCTTT
TTGTATAATAACTCTGTAACCGTAAACCAAACAACGGTTTACGGCGTAAA
CCATTAgtaaagaaaactttttaaaatattttttaatatgacGGTTTACA
CCGTAAACCGAAAAAAAACAACGGTTTACGGCGTAAACCATTAgtaaaga
aaactttttaaaatattttttaatataacGGTTTACACCGTAAACCGTTA
AAAAAATGTTATCTTTGACTTTTTTTGCCTGTATAGTTTTGAAGGTTTAC
CGTAAGAGTCCTTATGCATAAAACTGAACATTTTAACCTGTTTTGAATAG
AACTTGAGTTGGCAAAATACCGAGACATTCCTAAGATAAAATATTGTACC
TGTCAATATTCTATGCGGGTTCCCTTGCGTTTTATTATTTCATCCATGCG
TCCCCATAATGACTCAATAGTGCGATCGATAATTTCTTTTGAGAAACTTT
CTAAGGTGCGTTGACATCTGTCGCTGAACTGCTCAAATGTTTCTTTTGAA
ATACATTGGTCCAAAGCGTCTTCCCGGATCTTTTTGCCGACCAAgtggaa
aacattttcaataacATTTATATCAGGACTACGGGCAGGTATACTGAACA
ATTCACATTTTATTTTTGCCATTGCTTCTTTGGCTTTGGCGGAGTTCTGA
GATGGGTCTCCATCTTGTAAGAATCGTTTACCATGCTTACCcttgcattt
tttgaaaattttgttgaatttttctttcacaAACTCAGCATAGTTCTCTC
CATTCAATGTTTTACGGAAGGGCTCTACGTGTACCACTCCAGCATTGTAC
GATATTGCGACAAAAAACTTAGCCACTCTTCCACCGACACCCTCCTTTTT
TCCTTTGGCAGTACAGTATATGCTCAATCCTTCGCTTCTAAGCCGCCAAG
TTCTTGTTCGATTGGTCTTTGCGTACTCATAAGGGTTTGTCTTGTGAGCC
CAAGCAACTCCATCCAAATAGAAACTAATGCCATTTGTCCAAAAGTCTTC
CGGTAAGTTCTTTTTGCTATCACGTGCAAACTGCATTCGTTTTTTCAAAT
CGGTTTTGGTCACTTGTCCCTTCCTACGACATTGGAGATAGCTGTATCCT
TGCGCGTTCATACAGCGCCTGACTGTTCTATTGCTACAATGGGACTTCAA
GATCCCGGCAGATTGTTGAATATGAGTTGAGTTGAATACGCCTCTTTTTG
ATCGAAGTCTATAAAtctcgttttttatttttcgtgcATCCCGAGCTGAC
AGCTTTTTCGGTCGTCCAAGATTTTTGTGTCGTTTATCGATAGGCTTTTC
TCCAATCGGTTTCTGCGCATGCCGGTATAAAGTTCTTTGAGGGTACTTTG
GAAATCTTTCGCCAATCTCTTTCATACTCATTCCTTTGTCTTGAAATAGG
TAGCGAATATAAACCGATACATCATCAGgaattttttgatatttcatttt
tgttttagtttattaCTATAGATATAGATATATGATATAGATGTAAATAG
ACATGCAGATATGTATTTTGCAGAAGGACAGTGTATCAATGTAAGGACCT
TAATTGATTCTTATGCcactgaaaatctttttgatacATTGATACACTGT
CAAGTTAGACATGTTGAGTTATTTTTATAGGAGTTTGAAAGTAGTAAGAT
AATTTTCTCAAGTTGTGCTTCATTAATTTACCCTGCCTCAGTCCTTTTTA
AGTTTGGATAGTAAAAATTCTCTTGCATCTCTTTTAGAATGTTTTTAAGT
CTCTGCAGAAACAAAATATGCTACCATGAGGTTTCAGAGTAAAGCATTTC
ATCATTAACCTTTAGCATTTTGATTCCCCAGAGCAATCAGACACCgg Run BLAST on NCBI protein sequence of TCONS_00055769-protein >TCONS_00055769-protein ID=TCONS_00055769-protein|Name=TCONS_00055769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MAEVGSRSVYLVTYSQADRQKCESAEKFAEIITAAFENCKVLQWASSEES
HSEGGFHYHLALKFDRVKRWKKVRDFIQQRYDICVNFSNSHENYYSAYTY
VIKEGSYVLSQNHPVYTGSPKTGKASRKRKEGRSESDESSASCSRSRRSI
TVLDVHEMIVKQNVKTDDELCRQASREKADGKVDLAEFILKKPENRRREL
IKTAWKIENAEKACDRKGMSIIDIFEATGQLECSCPEYCKWYEMAGQVLY
NNDIDITKFAAGIYNALSQGRRKFANFMITGPTNCGKTFLLMPLTKIFNT
FLNPASGTFAWVGAVTSEVVFLNDFRWSEKILPWHDFLNLLEGAPIHISA
PKTHYAEDLLWDKKQPVFSTASHEIIKKFISGDIDERETEMMKTRWNVFK
LKYRIDEKDAVIIEPCAKCFHSLIDNFRRL Run BLAST on NCBI transcript from alignment at scaffold_258:364680..368576 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055769 ID=TCONS_00055769|Name=TCONS_00055769|organism=Clytia hemisphaerica|type=transcript|length=3897bp|location=Sequence derived from alignment at scaffold_258:364680..368576 (Clytia hemisphaerica)
ccGGTGTCTGATTGCTCTGGGGAATCAAAATGCTAAAGGTTAATGATGAA
ATGCTTTACTCTGAAACCTCATGGTAGCATATTTTGTTTCTGCAGAGACT
TAAAAACATTCTAAAAGAGATGCAAGAGAATTTTTACTATCCAAACTTAA
AAAGGACTGAGGCAGGGTAAATTAATGAAGCACAACTTGAGAAAATTATC
TTACTACTTTCAAACTCCTATAAAAATAACTCAACATGTCTAACTTGACA
GTGTATCAATgtatcaaaaagattttcagtgGCATAAGAATCAATTAAGG
TCCTTACATTGATACACTGTCCTTCTGCAAAATACATATCTGCATGTCTA
TTTACATCTATATCATATATCTATATCTATAGtaataaactaaaacaaaa
atgaaatatcaaaaaattcCTGATGATGTATCGGTTTATATTCGCTACCT
ATTTCAAGACAAAGGAATGAGTATGAAAGAGATTGGCGAAAGATTTCCAA
AGTACCCTCAAAGAACTTTATACCGGCATGCGCAGAAACCGATTGGAGAA
AAGCCTATCGATAAACGACACAAAAATCTTGGACGACCGAAAAAGCTGTC
AGCTCGGGATgcacgaaaaataaaaaacgagaTTTATAGACTTCGATCAA
AAAGAGGCGTATTCAACTCAACTCATATTCAACAATCTGCCGGGATCTTG
AAGTCCCATTGTAGCAATAGAACAGTCAGGCGCTGTATGAACGCGCAAGG
ATACAGCTATCTCCAATGTCGTAGGAAGGGACAAGTGACCAAAACCGATT
TGAAAAAACGAATGCAGTTTGCACGTGATAGCAAAAAGAACTTACCGGAA
GACTTTTGGACAAATGGCATTAGTTTCTATTTGGATGGAGTTGCTTGGGC
TCACAAGACAAACCCTTATGAGTACGCAAAGACCAATCGAACAAGAACTT
GGCGGCTTAGAAGCGAAGGATTGAGCATATACTGTACTGCCAAAGGAAAA
AAGGAGGGTGTCGGTGGAAGAGTGGCTAAGTTTTTTGTCGCAATATCGTA
CAATGCTGGAGTGGTACACGTAGAGCCCTTCCGTAAAACATTGAATGGAG
AGAACTATGCTGAGTTtgtgaaagaaaaattcaacaaaattttcaaaaaa
tgcaagGGTAAGCATGGTAAACGATTCTTACAAGATGGAGACCCATCTCA
GAACTCCGCCAAAGCCAAAGAAGCAATGGCAAAAATAAAATGTGAATTGT
TCAGTATACCTGCCCGTAGTCCTGATATAAATgttattgaaaatgttttc
cacTTGGTCGGCAAAAAGATCCGGGAAGACGCTTTGGACCAATGTATTTC
AAAAGAAACATTTGAGCAGTTCAGCGACAGATGTCAACGCACCTTAGAAA
GTTTCTCAAAAGAAATTATCGATCGCACTATTGAGTCATTATGGGGACGC
ATGGATGAAATAATAAAACGCAAGGGAACCCGCATAGAATATTGACAGGT
ACAATATTTTATCTTAGGAATGTCTCGGTATTTTGCCAACTCAAGTTCTA
TTCAAAACAGGTTAAAATGTTCAGTTTTATGCATAAGGACTCTTACGGTA
AACCTTCAAAACTATACAGGCAAAAAAAGTCAAAGATAACATTTTTTTAA
CGGTTTACGGTGTAAACCgttatattaaaaaatattttaaaaagttttct
ttacTAATGGTTTACGCCGTAAACCGTTGTTTTTTTTCGGTTTACGGTGT
AAACCgtcatattaaaaaatattttaaaaagttttctttacTAATGGTTT
ACGCCGTAAACCGTTGTTTGGTTTACGGTTACAGAGTTATTATACAAAAA
GCTGAACATTTTTGCAAATCCTTATAACGTAAACAATATAAACACAACAA
AGGAAAAAAAAGCAGCGAAAGAGCGCTTTTAGAGTCTTCTGAAGTTATCG
ATGAGCGAATGAAAGCATTTTGCACAGGGTTCAATGATTACCGCGTCTTT
CTCATCAATTctatatttcaatttgaaaacgTTCCATCTGGTTTTCATCA
TCTCTGTTTCCCTTTCATCAATGTCACCGCTGATGAACTTCTTAATTATC
TCGTGACTCGCAGTACTGAAAACCGGCTGTTTTTTGTCCCACAGGAGATC
TTCTGCGTAGTGTGTTTTCGGGGCAGAGATATGAATGGGTGCACCCTCCA
ACAAATTGAGAAAATCGTGCCAGGGCAAGATTTTCTCACTCCATCTGAAG
TCGTTCAGGAAAACAACTTCAGAGGTGACTGCTCCTACCCAAGCAAAAGT
TCCAGATGCGGGGTTGagaaaagtgttgaaaatttttgtcaaggGCATAA
GTAAAAATGTTTTCCCACAGTTTGTAGGTCCAGTGATCATGAAATTCGCA
AACTTTCTGCGGCCTTGGGATAGCGCGTTATAGATGCCTGCAGCAAATTT
TGTGATATCGATATCATTATTGTAAAGGACCTGACCTGCCATCTCATACC
ACTTGCAATACTCTGGGCAAGAGCATTCCAATTGGCCGGTCgcttcaaaa
atatcaattatGGACATGCCCTTGCGGTCACAAGCTTTCTCTGCGTTTTC
AATTTTCCAGGCAGTTTTTATCAATTCGCGACGCCTGTTCTCTGGCTTCT
TCAATATGAATTCAGCCAAGTCAACTTTCCCATCTGCTTTTTCTCTACTC
GCTTGCCTACATAACTCATCATCAGTCTTAACATTCTGCTTTACAATCAT
CTCATGTACATCCAAAACTGTGATCGACCTTCTCGACCTGGAACAACTTG
CTGAACTTTCATCTGATTCACTCCTGCCTTCCTTCCTTTTGCGAGAAGCT
TTGCCCGTTTTCGGAGATCCTGTGTAGACTGGGTGATTTTGACTCAAAAC
ATAGCTGCCTTCTTTAATCACATAGGTATACGCACTGTAATAATTCTCAT
GACTGTTACTGAAATTAACGCAAATATCATACCTCTGCTGAATGAAGTCT
CTCACCTTCTTCCAACGTTTGACTCTATCAAATTTAAGTGCCAAATGATA
GTGGAAACCCCCCTCTGAATGTGATTCTTCTGAACTTGCCCATTGtaaaa
ctttgcaattttcaaaaGCTGCGGTGATAATTTCTGCAAATTTTTCTGCG
CTTTCACACTTTTGTCTGTCCGCTTGACTGTAAGTCACCAAATAAACAGA
CCGAGAACCAACTTCAGCCATCTTGTGCTTTACtttatttagtttttgac
ttttattatCTAAAATAGAGCATATTATTTTAAATAGAAGTTACCATGTA
CATAGAAGTTTTAAAACATAGGACTTTCCACTTTTGGAACTCCAGACATG
CCCCCAGACAGGCCTTCACACCTCGTGTAATGAAATTGCATAATATTGCG
CAACAATAGCTACCATCTTAGTTTTGAATCCGGTAGTCAAAAATCCGGAT
AGGTAAAACTCCGGACATAAAGGACCACATGGGTCACGGCACTTTCTTTC
TAAGTGAAATTTGTGGTTAGCAGGTCATCCTGAGGCTTGTAATGACTTGA
TTATGATGTAACtgatatttttcattcaaaaagtaaATATTGTGGTGAAA
AACTTGTCTGGGATGTCTGGAGAGTTATGTAAATAGTATATGTAAGCTCA
ATATGCCTTATTTCGCTTGTTTTTTGTGCCCATTTTTCCTAGTGTGTCCC
TCCCCTTTTCAATTTTTTTTTCAAAATTCAGACAATGTTGGACAAAATAT
TCGGCAAAAACCTTTGAGATAAAAAAAATCCCCCCCTTCACCCCCAAAAT
CAATGTTGATGGGTGGGAAAGGCTTGCTATTGTTTACCAAGTCTTATCCA
ACATTGAACTGGGGGTAAAAGGGGGTCTGGGCCCAAGTTATCCACca Coding sequence (CDS) from alignment at scaffold_258:364680..368576 >TCONS_00055769 ID=TCONS_00055769|Name=TCONS_00055769|organism=Clytia hemisphaerica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_258:364680..368576 (Clytia hemisphaerica)
TTAGAGTCTTCTGAAGTTATCGATGAGCGAATGAAAGCATTTTGCACAGG
GTTCAATGATTACCGCGTCTTTCTCATCAATTctatatttcaatttgaaa
acgTTCCATCTGGTTTTCATCATCTCTGTTTCCCTTTCATCAATGTCACC
GCTGATGAACTTCTTAATTATCTCGTGACTCGCAGTACTGAAAACCGGCT
GTTTTTTGTCCCACAGGAGATCTTCTGCGTAGTGTGTTTTCGGGGCAGAG
ATATGAATGGGTGCACCCTCCAACAAATTGAGAAAATCGTGCCAGGGCAA
GATTTTCTCACTCCATCTGAAGTCGTTCAGGAAAACAACTTCAGAGGTGA
CTGCTCCTACCCAAGCAAAAGTTCCAGATGCGGGGTTGagaaaagtgttg
aaaatttttgtcaaggGCATAAGTAAAAATGTTTTCCCACAGTTTGTAGG
TCCAGTGATCATGAAATTCGCAAACTTTCTGCGGCCTTGGGATAGCGCGT
TATAGATGCCTGCAGCAAATTTTGTGATATCGATATCATTATTGTAAAGG
ACCTGACCTGCCATCTCATACCACTTGCAATACTCTGGGCAAGAGCATTC
CAATTGGCCGGTCgcttcaaaaatatcaattatGGACATGCCCTTGCGGT
CACAAGCTTTCTCTGCGTTTTCAATTTTCCAGGCAGTTTTTATCAATTCG
CGACGCCTGTTCTCTGGCTTCTTCAATATGAATTCAGCCAAGTCAACTTT
CCCATCTGCTTTTTCTCTACTCGCTTGCCTACATAACTCATCATCAGTCT
TAACATTCTGCTTTACAATCATCTCATGTACATCCAAAACTGTGATCGAC
CTTCTCGACCTGGAACAACTTGCTGAACTTTCATCTGATTCACTCCTGCC
TTCCTTCCTTTTGCGAGAAGCTTTGCCCGTTTTCGGAGATCCTGTGTAGA
CTGGGTGATTTTGACTCAAAACATAGCTGCCTTCTTTAATCACATAGGTA
TACGCACTGTAATAATTCTCATGACTGTTACTGAAATTAACGCAAATATC
ATACCTCTGCTGAATGAAGTCTCTCACCTTCTTCCAACGTTTGACTCTAT
CAAATTTAAGTGCCAAATGATAGTGGAAACCCCCCTCTGAATGTGATTCT
TCTGAACTTGCCCATTGtaaaactttgcaattttcaaaaGCTGCGGTGAT
AATTTCTGCAAATTTTTCTGCGCTTTCACACTTTTGTCTGTCCGCTTGAC
TGTAAGTCACCAAATAAACAGACCGAGAACCAACTTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055769-exon-scaffold_258-1491911889:364680..368576 | TCONS_00055769-exon-scaffold_258-1491911889:364680..368576 | Clytia hemisphaerica | exon |
| TCONS_00055769-exon-scaffold_258-1510915933:364680..368576 | TCONS_00055769-exon-scaffold_258-1510915933:364680..368576 | Clytia hemisphaerica | exon |
| TCONS_00055769-exon-scaffold_258-1575043694:364680..368576 | TCONS_00055769-exon-scaffold_258-1575043694:364680..368576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:364680..368576 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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