TCONS_00055738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055738
Unique NameTCONS_00055738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055738 ID=TCONS_00055738|Name=TCONS_00055738|organism=Clytia hemisphaerica|type=transcript|length=572bp
acaatgacaacaaatTTGATGACAATGAAAAACATGGGCAAATGgctaag
aagaaaaaaactCGGAAGTGTCCAACAACTGAATGTCCGTTCTGTGGCAA
GGaacaaacaaacttaaaaaGTCATGCCATGAGAAAACATGGCTTAACAG
AAGAGAACGCTCTGGCAATGAAAAGCCAATATAACCTCTACAATGAACGC
ATCATAAAGAGCGACGATGATCGTAAATCGAAGAGGCGAATTCACCAACG
AAGAACCTGCCCTGTACTAGGTTGCTCGAAAACACCTAAAAGATTAAACA
ATCACTTGAGACAAACTcacaaaataaagaagaaagaaCTATTTGACCGT
CTCATGAAAAAGAGTGAACTTGTGGAAAATTTCGACAGTGAAGACAGTGA
AGTTGAAAATGAGGATGAATCGGGGTCAGAGGAGGAGTCCGATTATGTGG
ccttcaaaaatattattgagAAAGAGAGAGACTATCTCGCCACTATTGAC
TCGAACTCTGACTCCGACTCAGATTGTGACTGGTTACTTGAAACCACGAG
AAGATGGAATGCTAAGAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00055738-protein

>TCONS_00055738-protein ID=TCONS_00055738-protein|Name=TCONS_00055738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
NDNKFDDNEKHGQMAKKKKTRKCPTTECPFCGKEQTNLKSHAMRKHGLTE
ENALAMKSQYNLYNERIIKSDDDRKSKRRIHQRRTCPVLGCSKTPKRLNN
HLRQTHKIKKKELFDRLMKKSELVENFDSEDSEVENEDESGSEEESDYVA
FKNIIEKERDYLATIDSNSDSDSDCDWLLETTRRWNAKKG
Run BLAST on NCBI

transcript from alignment at scaffold_258:337323..338768-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055738 ID=TCONS_00055738|Name=TCONS_00055738|organism=Clytia hemisphaerica|type=transcript|length=1446bp|location=Sequence derived from alignment at scaffold_258:337323..338768- (Clytia hemisphaerica)
ACAATGACAACAAATTTGATGACAATGAAAAACATGGGCAAATTGCTAAG
AAGAAAAAAACTGTAAGTAATTTTCGAATAATAGCTTTTCGTTCATAAAC
AGGGAAATCCTTAGAGAAAATTGAACCATGTGGAGTTTCCTGGAAAAAAA
GGCATTTTGGATATGGCAATTTTAGAGGGTAGGATTTCCTTTGACGAAAT
GTTAAACTACAGTCTTGGGTTTGACTTTTGGATCAAAAAGGGCTTCAAAT
CCTGGGGTTGTCTCGAACTTTTCGAAACCAAAGTTTGAGAACTGGCCTGT
AGTTGTTGTGCCCTTACCCTAAAGCAAAATACATGCCTTTCTCACAGACC
CGCTAGGACCCCTGTACACTGAAAAATAGGCCAAAAATCGTCCCGGTAGA
AAGAAAAATTTCATTTTTCATTATTATAACTTCATTATTAAGTTAAAATC
TTAATTTCAGCGGAAGTGTCTAACAACTGGAANTGACAATGAGAAACATG
GGCAAATGGCTAAGAAGAAAAAAACTGTAAGTAATTTTCGAAAAATAGCT
TTTCGTTCTTAAAAACAGGGAAATCCATAGAGAAAATTGAACTATGCTGA
GTTTCCTGGACAAAAGGCATTTTGGAAATGGCAATTTTCGAGGGTAGGAT
TTCCTTTGACGAAATGTTAAACTACAGTCTTGGGTTTTCATGACTTTTGG
ATCAAAAAGGGCTTCAAATCCTGGGGTCGTCTCGAACTTTTCAAAACCAA
AGTTTGGGAACTGGCCTGTAGTTGTGCCCTTCCCCTAAAGCAAATTACAT
GCCTTTCTCACAGACCCAGTAGGACCCCTGTACACTGAATAATAGGCCAA
AAATCGTCCCGGTAGAAAGAAAAACTTCATTTTTAATTATTATAACTTCA
TTATTAAGTTAAAATCTTAAAAATTCTTAATTTCAGCGGAAGTGTCCAAC
AACTGAATGTCCGTTCTGTGGCAAGGAACAAACAAACTTAAAAAGTCATG
CCATGAGAAAACATGGCTTAACAGAAGAGAACGCTCTGGCAATGAAAAGC
CAATATAACCTCTACAATGAACGCATCATAAAGAGCGACGATGATCGTAA
ATCGAAGAGGCGAATTCACCAACGAAGAACCTGCCCTGTACTAGGTTGCT
CGAAAACACCTAAAAGATTAAACAATCACTTGAGACAAACTCACAAAATA
AAGAAGAAAGAACTATTTGACCGTCTCATGAAAAAGAGTGAACTTGTGGA
AAATTTCGACAGTGAAGACAGTGAAGTTGAAAATGAGGATGAATCGGGGT
CAGAGGAGGAGTCCGATTATGTGGCCTTCAAAAATATTATTGAGAAAGAG
AGAGACTATCTCGCCACTATTGACTCGAACTCTGACTCCGACTCAGATTG
TGACTGGTTACTTGAAACCACGAGAAGATGGAATGCTAAGAAAGGT

Coding sequence (CDS) from alignment at scaffold_258:337323..338768-

>TCONS_00055738 ID=TCONS_00055738|Name=TCONS_00055738|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_258:337323..338768- (Clytia hemisphaerica)
CGGAAGTGTCCAACAACTGAATGTCCGTTCTGTGGCAAGGAACAAACAAA
CTTAAAAAGTCATGCCATGAGAAAACATGGCTTAACAGAAGAGAACGCTC
TGGCAATGAAAAGCCAATATAACCTCTACAATGAACGCATCATAAAGAGC
GACGATGATCGTAAATCGAAGAGGCGAATTCACCAACGAAGAACCTGCCC
TGTACTAGGTTGCTCGAAAACACCTAAAAGATTAAACAATCACTTGAGAC
AAACTCACAAAATAAAGAAGAAAGAACTATTTGACCGTCTCATGAAAAAG
AGTGAACTTGTGGAAAATTTCGACAGTGAAGACAGTGAAGTTGAAAATGA
GGATGAATCGGGGTCAGAGGAGGAGTCCGATTATGTGGCCTTCAAAAATA
TTATTGAGAAAGAGAGAGACTATCTCGCCACTATTGACTCGAACTCTGAC
TCCGACTCAGATTGTGACTGGTTACTTGAAACCACGAGAAGATGGAATGC
TAAGAAAGGTATGGGCAAATGGCTAAGAAGAAAAAAACTAATGACAACAA
ATTTGATGACAATGAAAAACCGGAAGTGTCCAACAACTGAATGTCCGTTC
TGTGGCAAGGAACAAACAAACTTAAAAAGTCATGCCATGAGAAAACATGG
CTTAACAGAAGAGAACGCTCTGGCAATGAAAAGCCAATATAACCTCTACA
ATGAACGCATCATAAAGAGCGACGATGATCGTAAATCGAAGAGGCGAATT
CACCAACGAAGAACCTGCCCTGTACTAGGTTGCTCGAAAACACCTAAAAG
ATTAAACAATCACTTGAGACAAACTCACAAAATAAAGAAGAAAGAACTAT
TTGACCGTCTCATGAAAAAGAGTGAACTTGTGGAAAATTTCGACAGTGAA
GACAGTGAAGTTGAAAATGAGGATGAATCGGGGTCAGAGGAGGAGTCCGA
TTATGTGGCCTTCAAAAATATTATTGAGAAAGAGAGAGACTATCTCGCCA
CTATTGACTCGAACTCTGACTCCGACTCAGATTGTGACTGGTTACTTGAA
ACCACGAGAAGATGGAATGCTAAGAAAGGTATGGGCAAATGGCTAAGAAG
AAAAAAACTAATGACAACAAATTTGATGACAATGAAAAACCGGAAGTGTC
CAACAACTGAATGTCCGTTCTGTGGCAAGGAACAAACAAACTTAAAAAGT
CATGCCATGAGAAAACATGGCTTAACAGAAGAGAACGCTCTGGCAATGAA
AAGCCAATATAACCTCTACAATGAACGCATCATAAAGAGCGACGATGATC
GTAAATCGAAGAGGCGAATTCACCAACGAAGAACCTGCCCTGTACTAGGT
TGCTCGAAAACACCTAAAAGATTAAACAATCACTTGAGACAAACTCACAA
AATAAAGAAGAAAGAACTATTTGACCGTCTCATGAAAAAGAGTGAACTTG
TGGAAAATTTCGACAGTGAAGACAGTGAAGTTGAAAATGAGGATGAATCG
GGGTCAGAGGAGGAGTCCGATTATGTGGCCTTCAAAAATATTATTGAGAA
AGAGAGAGACTATCTCGCCACTATTGACTCGAACTCTGACTCCGACTCAG
ATTGTGACTGGTTACTTGAAACCACGAGAAGATGGAATGCTAAGAAAGGT
ATGGGCAAATGGCTAAGAAGAAAAAAACTAATGACAACAAATTTGATGAC
AATGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035082XLOC_035082Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055738-proteinTCONS_00055738-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055738-exon-scaffold_258-1575043694:338736..338768TCONS_00055738-exon-scaffold_258-1575043694:338736..338768Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1575043694:338243..338271TCONS_00055738-exon-scaffold_258-1575043694:338243..338271Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1575043694:337323..337832TCONS_00055738-exon-scaffold_258-1575043694:337323..337832Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1510915933:338736..338768TCONS_00055738-exon-scaffold_258-1510915933:338736..338768Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1510915933:338243..338271TCONS_00055738-exon-scaffold_258-1510915933:338243..338271Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1510915933:337323..337832TCONS_00055738-exon-scaffold_258-1510915933:337323..337832Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1491911889:338736..338768TCONS_00055738-exon-scaffold_258-1491911889:338736..338768Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1491911889:338243..338271TCONS_00055738-exon-scaffold_258-1491911889:338243..338271Clytia hemisphaericaexon
TCONS_00055738-exon-scaffold_258-1491911889:337323..337832TCONS_00055738-exon-scaffold_258-1491911889:337323..337832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:337323..338768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.190614	0	0	0	0	0	0	0	0.306046	0	0	0.775791	0.11539	0	0	0.330161	0	0	0.326154	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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