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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055669 ID=TCONS_00055669|Name=TCONS_00055669|organism=Clytia hemisphaerica|type=transcript|length=1127bpRun BLAST on NCBI transcript from alignment at scaffold_256:5257..6383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055669 ID=TCONS_00055669|Name=TCONS_00055669|organism=Clytia hemisphaerica|type=transcript|length=1127bp|location=Sequence derived from alignment at scaffold_256:5257..6383+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055669 vs. Swiss-Prot (Human)
Match: ZNF3 (Zinc finger protein 3 OS=Homo sapiens GN=ZNF3 PE=1 SV=3) HSP 1 Score: 185.267 bits (469), Expect = 2.498e-53 Identity = 86/181 (47.51%), Postives = 117/181 (64.64%), Query Frame = -1
Query: 3 TRKNNLVTKER----GKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKYFLKKENLKVHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLH 533
T +NL++ +R + KC EC KSF DL +H RIHTGE+P++C ECGK F+QS L H +H+ +P++C +CGK F +L H+RIH EK ++C ECGK F L H RIHTG+KP+ C ECGK FS +L H R+H+GE+P+EC ECGK FS+ +LY+H +H
Sbjct: 182 TVNSNLISHQRLPVGDRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSALILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECNECGKAFSQSSHLYQHQRIH 362 HSP 2 Score: 175.637 bits (444), Expect = 1.205e-49 Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = -1
Query: 3 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKYFLKKENLKVHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLH 497
K +C +CGK+F + L H RIHTGE+P++C ECGK F+ S LTHH +H+ +P+ C ECGK F +L H+RIH EK ++C ECGK F + +L H RIHTG+KP++C ECG F++ L H R+H+GE P+EC ECGK F L RH +H
Sbjct: 254 KPYECSDCGKTFSCSSALILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIH 418 HSP 3 Score: 170.244 bits (430), Expect = 1.070e-47 Identity = 80/180 (44.44%), Postives = 112/180 (62.22%), Query Frame = -1
Query: 3 RKNNLVTKER----GKSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKYFLKKENLKVHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLH 530
R ++L+ +R K +C ECGK+F + L +H RIHTGE+P++C +CGK F+ S L H +H+ +P++C ECGK F +L H+RIH EK + C ECGK F + L H RIHTG+KP++C ECGK FS L H R+H+GE+P+EC ECG F+ L +H +H
Sbjct: 211 RTSDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSALILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIH 390 HSP 4 Score: 164.466 bits (415), Expect = 1.182e-45 Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = -1
Query: 3 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKYFLKKENLKVHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLH 497
+S K + G SF N +L H R+ G+RP KC EC K F ++ L H +H+ +P++C ECGK F L +H+RIH EK ++C +CGK F L +H RIHTG+KP++C ECGK FSW +L H R+H+GE+P+ C ECGK FS L H +H
Sbjct: 170 RSEKYNDFGNSFTVNSNLISHQRLPVGDRPHKCDECSKSFNRTSDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSALILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIH 334 HSP 5 Score: 154.451 bits (389), Expect = 5.386e-42 Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = -1
Query: 69 KSIKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFAQSDGLTHHLIVHSSIRPFKCEECGKYFKTKGSLKKHKRIHAEEKSFKCEECGKYFLKKENLKVHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPF 497
K +C ECGK+F ++ L H RIHTGE+P+ C ECGK F++S L HH +H+ +P++C ECGK F L +H+RIH EK ++C ECG F L H RIHTG+ P++C ECGK F + +L H R+H+GE+P
Sbjct: 282 KPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHHQRIHTGEKPYECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECSECGKAFRYSSALVRHQRIHTGEKPL 424 The following BLAST results are available for this feature:
BLAST of TCONS_00055669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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