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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055530 ID=TCONS_00055530|Name=TCONS_00055530|organism=Clytia hemisphaerica|type=transcript|length=2119bp
CGACTCCATTGAGGCAACTTATACCGAATGCTAGTCAAGATGGTATTGAG
ATTTTATATGCAATGTTGGCTTGGAATCCACAACAAAGACCTTCATCACA
GAAATCGCTAGCGCACAAATTTTTCACAGTCGGACAAAATTTACATCGTT
CACATAAACAGAAAGCAAAACCGTTGAAAGCCGAAACAGGGCTAGGTGAA
AGAAATAACACGAACTTACAAGAGACTGTCAAACCCATCAATTTAAATAT
GtctttaaacaaaaatttgaaaaagaacaaTATGGATAATAATGCTAGTG
GTGGCAAATTTGACTTTGAACCCAAGAAACCAGAGGGTCCGAAAAAATCT
CAAGAGCCAAGGAAACGTTGGGGTTCATCCAATATGAATAACAAACAAAA
TGCTGCCGCTACTAAAGATTCAGTTGACGAATTCGATTCTATTCTGGATG
GTTTGGGAAGTAGTACAAATAGCTTCAATAAAAGGCATCCTATCAAGAAA
AGGGATACCATGGAATCAATAAGTGATAAAGAGAAAGTTTTGGGTGGATT
TCAAGCTTTACCAAGTATTGGCAGTGGAAAGAAACGAACGACACCAGGTA
GCGCTAAGGAGCATTATCTACAAAAATCACGTTATTACCCTGGAGGTCCA
AACGCCCCCATTAAACCGAGTATCGAAGGACGAGTCGTGGATGCTGGAAG
TGGTCGGAAATTTGTCGAATTCACATCCGGTAATGTTCAACCCAACATGA
ACTCAAGATACATGGGAGATATGGGGCAAGGCACTAAACTACCTACCATC
AAGAAGAAAGAAAGCTCTGATAGATTAGCTGGTGGTGGTGCCATCTGGAA
ACCTCCTGCATTGTCCAACAACAAACAACGATCTTTAGGTCATATCTCGA
AACCATCTATGGCTATTGGAAGAACTAACTGGAGTAATAAGTatggaaaa
tgaaattatcaaaTTCAACATCTTGGAAGTTTACCTAAAGCTTATAATAT
TTGGCTTTCTTGAAACGCCAGACGTGATGGAAAGGAAAGATGATTTAGAG
CTCACTAAAGTATCATTCGTGTGTCAGGGCGTGACGCCCCTACCATTGGG
ACGGAATTGCCGAAAGAAGTTATTTCTTTAAGGAGGAGCTATAAACAACG
AGTATTATGATGTTCGAGTCAAAGAGATTGTGAagacttttaaaaaatga
attattttttttgaaaacgacAAAACTAAAAGTGAAAGACATTAGTCAAC
AAAGTTGTGCATAATATGGTGcatgtatttattttttgtcaaatggGAAT
CTCGAGGAAGGATTCTGTTTTAGTTATACGTTGCATTTAAACCCATGTAA
CGAGTTTCAGGAATTTTCGTAGAACATCTTAACAATCTCAGGATAATGTT
AGAAAAAGGTTCTCGCTGTTGATATCATGATGAACAACCcttaaatttaa
tttaatacctaatttgaattctgaaattttCTGATTCGTCGTACCTGTAA
TTTTCTTgtgctttaaaaaaagttgtaaatatTGTGATTGTAAATAGGAG
TTTATTTTAGAGCAAATAGGGATTTCATACACACAACAGAATAACCTGAT
GAACTTATCATCTGCTGACCCATTTACTAATCTGTTTTCGATTGGAATTT
CAATTCGGTTGCTCCAGGAAATTGAGGATTTCGAaactttatatttgttt
atattcaGACACGAATATGCTGTTAAGTCCACGGGCTTATTGTAAGGGTT
AGTCGAATTAACAGGAGTGGTACTCAGAAGAAAATACATGAAATAGGGGG
ATCTTAGGGTCACAATATATATTTAGGGTCACAATATATAGAGTACTTCC
CTTCACTTTGGGTTCTTTTAGTGAATTTTTCGCCGTGATTTTTGAAATGA
ACGTGCTTTATCACTTACTATATCACATTTTccctttaatttatttttag
ttttttttgcttAGTCCTTTTTCTGTCACATTCTTGCAACTGTGGAATGT
AGGAGAGAGGAGTTTTTATATAAATAAGCATGGTGTAAATATTTTATACT
GTTGGAATGAACGCTTATTATTTAAAGAGAATAGAGACTTCTTAAAACAA
TTATTTAATTAAACTTAAT Run BLAST on NCBI transcript from alignment at scaffold_253:754380..757969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055530 ID=TCONS_00055530|Name=TCONS_00055530|organism=Clytia hemisphaerica|type=transcript|length=3590bp|location=Sequence derived from alignment at scaffold_253:754380..757969- (Clytia hemisphaerica)
CGACTCCATTGAGGCAACTTATACCGAATGCTAGTCAAGATGGTATTGAG
ATTTTATATGCAATGTTGGCTTGGAATCCACAACAAAGACCTTCATCACA
GAAATCGCTAGCGCACAAATTTTTCACAGTCGGACAAAATTTACATCGTT
CACATAAACAGAAAGCAAAACCGTTGAAAGCCGAAACAGGGCTAGGTGAA
AGAAATAACACGAACTTACAAGAGACTGTCAAACCCATCAATTTAAATAT
GTCTTTAAACAAAAATTTGAAAAAGAACAATATGGATAATAATGCTAGTG
GTGGCAAATTTGACTTTGAACCCAAGAAACCAGAGGGTCCGAAAAAATCT
CAAGAGCCAAGGAAACGTTGGGGTTCATCCAATATGAATAACAAACAAAA
TGCTGCCGCTACTAAAGATTCAGTTGACGAATTCGATTCTATTCTGGATG
GTTTGGGAAGTAGTACAAATAGCTTCAATAAAAGGGTAAGTCGTGGATGT
TATTTTAATTTCGTAAGTTCATTTTACTTGGGATCTATATAATCTATTCT
TTACGAGTTATTAAATCTGCTAANTTCTCTTCTAGAATGACTGGGAAGAG
GGTTATCAATTAGCATCCAAAATGAACTTCAAATTTCCTAAAATGGTATG
TATTACTTTTTTGATAACATGGTCAGATAACAGAAAAAAAGTAGAAGACT
TTATCCAAAAATGCGGAACTGTGAAAAATCTTATAGAATCTTCCCTGATC
TTCGCTATATTTTTCAATGCATATTTTAGGTATCGACTCCATTGAGGCAA
CTTATACCGAATGCTAGTCAAGATGGTATTGAGATTTTATATGCAATGTT
GGCTTGGAATCCACAACAAAGACCTTCATCACAGAAATCGCTAGCGCACA
AATTTTTCACAGTCGGACAAAATTTACATCGTTCACATAAACAGAAAGCA
AAACCGTTGAAAGCCGAAACAGGGCTAGGTGAAAGAAATAACACGAACTT
ACAAGAGACTGTCAAACCCATCAATTTAAATATGTCTTTAAACAAAAATT
TGAAAAAGAACAATATGGATAATAATGCTAGTGGTGGCAAATTTGACTTT
GAACCCAAGAAACCAGAGGGTCCGAAAAAATCTCAAGAGCCAAGGAAACG
TTGGGGTTCATCCAATATGAATAACAAACAAAATGCTGCCGCTACTAAAG
ATTCAGTTGACGAATTCGATTCTATTCTGGATGGTTTGGGAAGTAGTACA
AATAGCTTCAATAAAAGGGTAAGTCGTGGATGTTATTTTAATTTCGTAAG
TTCATTTTACTTGGGATCTATATAATCTATTCTTTACGAGTTATTAAATC
TGCTAATTTTTAACACATTTCATTAGTTTATTCAATTTCATGGATCTTCT
TTATTTATAGCATCCTATCAAGAAAAGGGATACCATGGAATCAATAAGGT
AATTTTGATTGAAACTTATAAGCTTCTCCTCTTTATAGGTCATGGTTTGT
GAAATTAGTCTAACGAAATCTAACTAAGTAGAATAGTCCCATTATTGACA
TCTTCTTTCGGAAGTGTTGGAGTAATTTCAATTTCACGAATTCACTCACA
CTCTCTTCACACTTATAGTGATAAAGAGAAAGTTTTGGGTGGATTTCAAG
CTTTACCAAGTATTGGCAGTGGAAAGAAACGAACGACACCAGGTAGCGCT
AAGGAGCATTATCTACAAAAATCACGTTATTACCCTGGAGGTCCAAACGC
CCCCATTAAACCGAGTATCGAAGGACGAGTCGTGGATGCTGGAAGTGGTC
GGAAATTTGTCGAATTCACATCCGGTAATGTTCAACCCAACATGAACTCA
AGATACATGGGAGATATGGGGCAAGGCACTAAACTACCTACCATCAAGAA
GAAAGAAAGCTCTGATAGATTAGCTGGTAAGTCCCTCTTTTAGATAATAA
TGATTTCAGTTTTAAAGTTTTGAAGTTTACAGATACATTTTTAAGAATGG
CTAGGGGAAACCTTTGTTTAAACTGAGTTCATTTGAATCAGAGATTTTGT
AAACTTTTCTAAACAAACCTTAAATTGCGTCTCATGAAAGCCTTTGATCA
ATTTTGGTAATTTTTTACCAAAATACAACACCTTTGCATCGTTCGTGGTG
GATTGGTTAAAATAATCTCATAATTTAAATATTTCATAGGTGGTGGTGCC
ATCTGGAAACCTCCTGCATTGTCCAACAACAAACAACGATCTTTAGGTCA
TATCTCGAAACCATCTATGGCTATTGGAAGAACTAACTGGAGTAATAAGT
GAGTAACTTTTTTCGTCGATTTTTATGTTATTATCGAAGGACTTCTTAAA
TGAAAACTTTTGAGGAGCAATTTCTTAACAATGATGAATTTTTAAACTCT
TCTTTTTAAAGGTATGGAAAATGAAATTATCAAATTCAACATCTTGGAAG
TTTACCTAAAGCTTATAATATTTGGCTTTCTTGAAACGCCAGACGTGATG
GAAAGGAAAGATGATTTAGAGCTCACTAAAGTATCATTCGTGTGTCAGGG
CGTGACGCCCCTACCATTGGGACGGAATTGCCGAAAGAAGTTATTTCTTT
AAGGAGGAGCTATAAACAACGAGTATTATGATGTTCGAGTCAAAGAGATT
GTGAAGACTTTTAAAAAATGAATTATTTTTTTTGAAAACGACAAAACTAA
AAGTGAAAGACATTAGTCAACAAAGTTGTGCATAATATGGTGCATGTATT
TATTTTTTGTCAAATGGGAATCTCGAGGAAGGATTCTGTTTTAGTTATAC
GTTGCATTTAAACCCATGTAACGAGTTTCAGGAATTTTCGTAGAACATCT
TAACAATCTCAGGATAATGTTAGAAAAAGGTTCTCGCTGTTGATATCATG
ATGAACAACCCTTAAATTTAATTTAATACCTAATTTGAATTCTGAAATTT
TCTGATTCGTCGTACCTGTAATTTTCTTGTGCTTTAAAAAAAGTTGTAAA
TATTGTGATTGTAAATAGGAGTTTATTTTAGAGCAAATAGGGATTTCATA
CACACAACAGAATAACCTGATGAACTTATCATCTGCTGACCCATTTACTA
ATCTGTTTTCGATTGGAATTTCAATTCGGTTGCTCCAGGAAATTGAGGAT
TTCGAAACTTTATATTTGTTTATATTCAGACACGAATATGCTGTTAAGTC
CACGGGCTTATTGTAAGGGTTAGTCGAATTAACAGGAGTGGTACTCAGAA
GAAAATACATGAAATAGGGGGATCTTAGGGTCACAATATATATTTAGGGT
CACAATATATAGAGTACTTCCCTTCACTTTGGGTTCTTTTAGTGAATTTT
TCGCCGTGATTTTTGAAATGAACGTGCTTTATCACTTACTATATCACATT
TTCCCTTTAATTTATTTTTAGTTTTTTTTGCTTAGTCCTTTTTCTGTCAC
ATTCTTGCAACTGTGGAATGTAGGAGAGAGGAGTTTTTATATAAATAAGC
ATGGTGTAAATATTTTATACTGTTGGAATGAACGCTTATTATTTAAAGAG
AATAGAGACTTCTTAAAACAATTATTTAATTAAACTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055530-exon-scaffold_253-1575043694:757485..757969 | TCONS_00055530-exon-scaffold_253-1575043694:757485..757969 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1575043694:756522..756559 | TCONS_00055530-exon-scaffold_253-1575043694:756522..756559 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1575043694:756044..756351 | TCONS_00055530-exon-scaffold_253-1575043694:756044..756351 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1575043694:755672..755780 | TCONS_00055530-exon-scaffold_253-1575043694:755672..755780 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1575043694:754380..755558 | TCONS_00055530-exon-scaffold_253-1575043694:754380..755558 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1510915933:757485..757969 | TCONS_00055530-exon-scaffold_253-1510915933:757485..757969 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1510915933:756522..756559 | TCONS_00055530-exon-scaffold_253-1510915933:756522..756559 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1510915933:756044..756351 | TCONS_00055530-exon-scaffold_253-1510915933:756044..756351 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1510915933:755672..755780 | TCONS_00055530-exon-scaffold_253-1510915933:755672..755780 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1510915933:754380..755558 | TCONS_00055530-exon-scaffold_253-1510915933:754380..755558 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1491911889:757485..757969 | TCONS_00055530-exon-scaffold_253-1491911889:757485..757969 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1491911889:756522..756559 | TCONS_00055530-exon-scaffold_253-1491911889:756522..756559 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1491911889:756044..756351 | TCONS_00055530-exon-scaffold_253-1491911889:756044..756351 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1491911889:755672..755780 | TCONS_00055530-exon-scaffold_253-1491911889:755672..755780 | Clytia hemisphaerica | exon |
| TCONS_00055530-exon-scaffold_253-1491911889:754380..755558 | TCONS_00055530-exon-scaffold_253-1491911889:754380..755558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:754380..757969 - |
Blast
The following BLAST results are available for this feature:
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