TCONS_00055382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055382
Unique NameTCONS_00055382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055382 ID=TCONS_00055382|Name=TCONS_00055382|organism=Clytia hemisphaerica|type=transcript|length=3042bp
aaataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTG
ATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctgCC
TTGAAGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAA
GAAGCAACAACAAGAAAAAGGGGATTTCAACAAGGAGTCCATGCTTCTTC
AAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTAT
CCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGA
TGTGGAGACGTATAAACTCCCCTATGAGGAAAGTGAATTCTTAGATTACT
TGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCT
CAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTA
CAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAAC
CAACCTCACAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCG
AAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGC
TATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTG
CCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGA
AGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATG
TTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaac
aaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCC
ACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCC
ATCGAAAATAGACGTAACCTCACATGCAAAACTGATGGAACTACCGAAAT
ACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGC
GAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACG
TGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATG
GGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTTCT
CTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACT
CTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAA
ACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAACAGT
AACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaacaaca
gaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGA
TCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCATACC
ATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTC
ACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCAC
TTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGGAATCCTTAC
ATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAA
CCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAA
CAACAGCTTACATCCAATCTGTATCGGGTGCAACGATAGGAGGAACTTCA
CATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAG
TTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAA
TACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACCAGGCAAT
CTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGG
ACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAG
TCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCT
AACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCAT
TCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGAC
AAACTGTCATGATACAGGGACAGCCAGGACAACATCAAACTGGTCAGAAT
ACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGG
TCAACCGAATGGCCAAACGCAGGTTGTTCAAGGTCAAGCAATCATGTTGC
AGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCA
ACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACA
AGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTG
CTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAA
TATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCA
ACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGA
AGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACACC
CCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTCC
GCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATA
TCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagtt
ttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtga
aaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTT
TGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACTG
TATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAAA
TGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682229..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055382 ID=TCONS_00055382|Name=TCONS_00055382|organism=Clytia hemisphaerica|type=transcript|length=12100bp|location=Sequence derived from alignment at scaffold_253:682229..694328+ (Clytia hemisphaerica)
aaataaacaaataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTG
TAAGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAA
TCATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTA
GGATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacctN
TGTGCTGTATAACGACATTATAATTTCCTTAAAGCTTTTTTGTATGAAAC
TTTGACTCTTCGCTCCACGAAAGCTTTAACCTTCAAAATTGAAGTAATTT
ACTCAAAAAAGAATCCTATTTCTAGAAAATACAGTTTATTTtgtaatata
tataatatagtGGTAGTATACGATAGCAATAATATTGTGATAATTGTAAT
GATTTCTATTATAtaagtttttatttatgatatttAGTAATCCCAACTTT
AGTTTAATATTATCTtatgatttttcagaaatacatttttcaaaattttt
ttttgtaacctAAAGTTGATTCTTCAGCTAGTTTCTTTGTCAATAAAAGT
CGTAAACTAACCGTCTTGTATTTCATCTTAGAATCTGATAGAATACAATA
ATGacaatataaaataaacaaataaaaatgttatcaACAGTTGATGCACT
TGGATCTTCTGTAAGTCTATTTACTACAGTATGATAAAACTTAGAAAGTT
TCTGATTTTAATCATTAATTCTCTTTTTCCCTAATAATAACAATTACGGG
TTTTCAATTTAGGATCCATTCAATATGATGGTGAAAGATAtgccagattt
tgaaaaacctgCCTTGAAGTGAGTATAataacataaaaaaatattttgat
tgtgTTATTAACTATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTG
TATTTTGAAACCTCTGttagaaagaaaaaatcagtcccatttattgactt
tttaaaatttttatacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTT
TGAGAGAAATAAATTTGGGAGATGGTtgggaaaaagatttttgatgggaa
ttcattttggcaatttttggtcaaaaatctTCATTAGATATTCTCATTAA
AATCACATTATTCATATAGGAAATCACTATTTGAGCGACTTCTCAATGCT
TATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATT
AAAATAAGCTTTTTTTTCTCCATAGTATATGGGTTGATATCAAAATATCC
CATCATGTTTTATTCCACCATGGTATGTGATATAGTGTTATAAGCTTATT
AAAGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatga
taaacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATAA
TATTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCATGC
TTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAAT
CTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgG
AAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGT
AATTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCC
TAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGA
CATTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAG
TCATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatacttcT
GGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTT
ACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTAC
CTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATC
ACAACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTC
AAGCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatattata
ccaccctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattaga
agctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCAT
GCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctgt
cctgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggc
agttaaaatctttgcttggaaaagattgaaagaagtcattgcgttgacgt
caaaaaagggcaatgcattgactttagacagcccactttattaagcccac
tttaattcacaattagaataggcagggcgaaaagtgggccgtctaaacta
gagctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAATTAG
AAATGTTAAAGAGACTGAAATCCTATCAccaaatttttgcttttcaACTG
CCTTCAGAACTCtcattttttcattgtttattactttttgataaaatttt
atacTACAGAAAATTAAATATATCCCTATGTAACGATGTTAAGAAATTCT
TTGTTTTCCATGAATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTG
GAGTTACGTGATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTA
CATTTTATTAAAACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTG
TATTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCT
TACTTGGttgtagattttattttcattgaagCATTTTCCAACTGATTTTG
GTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATAT
ATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCAT
TGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCT
CAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAA
GGTTCTTTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATC
ATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTC
AAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAA
ATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGC
TAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGA
AAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACA
CCTTCGCCACCATGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANg
aaaaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGAT
TTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTA
NTTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaata
tgataaacAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAA
TAATATTGAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCA
TGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTC
AATCTGTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaaga
tgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTA
GGTAATTACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAA
TCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATG
TGACATTATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCT
GAGTCATTATTATTGTTTACATTGAAATgagtgaaaaatataaaaatact
tcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTA
TTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAAC
TACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCC
ATCACAACAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTT
GTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatatt
ataccaccctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATatt
agaagctgaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTT
CATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttc
tgtcctgcctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagtt
ggcagttaaaatctttgcttggaaaagattgaaagaagtcattgcgttga
cgtcaaaaaagggcaatgcattgactttagacagcccactttattaagcc
cactttaattcacaattagaataggcagggcgaaaagtgggccgtctaaa
ctagagctaacaTCCACCTGTTTGttattcttttgaaaagaattagAAAT
TAGAAATGTTAAAGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAAC
TGCCTTCAGAACTCtcattttttcattgtttattactttttgataaGATT
TTATACTACAGAAAATTAAATATATTCCTATGTAACGATCGATGTTAAGA
AATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGATGGTTGTGTC
ATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATAC
CACTTACATTTTATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTA
TTTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTG
GttgtagattttattttcattgaagCATTTTCCAACTGATTTTGGTCATA
AGAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGT
CTCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGT
CAGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTA
GTTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCT
TTACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAG
GTTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACT
TTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTA
CCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCAT
ATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGAT
TTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCG
CCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacG
TTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACA
TGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTT
AGTTATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctca
cagacccactgggactccttcccactggaaaaattggcctaaATATCGTC
cctagtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCA
ATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaa
ttttctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATA
GGAATATCGATCCCCAACgaatttcagtccgttatttttacccccactgg
ctgaaaaaatcccacccccttctcacacacccgagaagggggtgtatcat
ttAATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAAC
TAATCATGAACTAACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGT
TCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAAT
AAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCA
GCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAAT
GAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACA
CACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaa
gataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACA
TACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAA
TAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTATACCATACA
CCtcctcacagacccactgggactccttcccactggaaaaattggcctaa
ATATCGTCcctagtggaaaattatacactTAATTTGTATCCCAACTAAAA
ATAATCCAATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatcc
tcactgaattttctgacttaaaaacaatggaatttaaatccaCAGTCATA
AAAGTATAGGAATATCGATCCCCAACgaatttcagtccgttatttttacc
cccactggctgaaaaaatcccaccgggtgtgtgagaagggggtgtatcat
ttAATACCGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAAC
TAATCGTGAACTAACAATGACTCCTTGCAAACAGTATTTGTCTATCATCG
TTAAAAGTTTCGATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaat
tttagtttaaaCCACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCA
CATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGA
GAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTT
ATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATT
GGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAA
GAAAGATGGGCGTGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAG
AGACTTGGACGGTGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAAT
ATGTCAACTCAAATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGG
ATCGTTATTTGACCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGT
ACCTTAGGTTATGGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTT
TGTATCATTtggtttttatcattttattttacattcTTTTCGAAAGGTTT
TCTCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGA
ACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCG
CAAACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAAC
AGTAACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaaca
acagaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAA
AGATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCAT
ACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCAT
TTCACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAAT
CACTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTT
TTTGAGTTTTACTTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCAT
CTAAgattttctctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACAT
CCAAAATCTTATACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACAT
GAGTTTACATAACTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGA
GTTGCAGAGTAAAAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGA
CTACATTGAAATAATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATT
TAATTATTCAATCTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAA
CCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTA
TTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAAGTA
ACTTCTCATAAATTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGG
GTGTTTAATTTTGAGCACCATCTAGATTACTTCTGATTGACACGACCATT
CTCAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATC
ATTTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCA
ACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGT
ACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCA
AAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATG
CTGCAGGTACATgatcaaatcttttttgttggaataataatattttgcaa
aaagtATCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAAC
TAATTTTATTTGGCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGG
TTTTCCTGGATATTAAATTGTATGTCATCCAATACcttacttatttttca
aagtattgtaattttaaagcttaaaagtatttgttgtttttgtaaacTTT
CCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTG
GTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATG
GTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCA
AGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTG
GTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCA
GGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTT
CTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatt
tgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTAT
TTGATAAGCATAAGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCG
TTGTTCATTTCAATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAAT
TTTGTTTGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAG
GACAGGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGAC
CATTCTAAAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACT
AATCATTTTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGG
TGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCG
CAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCA
GCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAAT
CATGCTGCAGGTACatcatcaaatcttttttgttggaataacaatatttt
gcaaaatgtaTCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTC
CAACTGATTTTATTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTT
CTGGTTTTCCTGGATATTAAATTGTATGTCATCCAATACcttacttattt
ttcaaagtattgtaattttaaagcttaaagctatttgttgtttttgtaaa
cTTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGT
AGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAG
TTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAG
GGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCA
AGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTC
AACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGT
AACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttt
tgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTG
AAATTATTTGATAAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTT
TTTCTCGTTGTTCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTG
TTTGACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACA
AGCACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAA
CGCAGGTAAGCTATTCAACATTTAAATAACAGTTGACAGTTTCAAATGAT
TAATATGGTGAAAATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTA
TTTTATAAATattatttgctttttctcataagGTACACCATAATATACAC
TGGTAGCGTTTTTCCAATTTATTACCAACGAATTTCTTTTACTGTACACT
TGTATGATAAAAAAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAG
ACGAAGCTTCATTGCATATTGTTTGTGATTGTAGTTCATGACGAAATTAT
AGCCATTGTCGGAGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTT
CTTCCTCTACAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCA
AGGTGGACACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCG
GCGGCCAACAACTTCAAATCGTCCCTCAAATACAAAAACAAGGTATAACT
CGCCCATTTTCATCTTTCTATAATAATAGTACCGGAGCTTtttgtatttg
tatttttttgtaatgaaactttatcaaatgcaaacttaaaatttactttt
aagATTTACAATATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGA
TCGTTGTAAAAGACCTTACAAAAACACTTATTATTCTTGATATTATTCTT
ATTTCAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGC
TCTCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTG
GACAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGC
CCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGG
TGGGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGT
AAAACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCT
TTAATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTT
TTGATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTT
AcgaagttttcaatttttaagtgCGGCATACATAGTCATAATAATGATTT
CAttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACA
ATCTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATT
ATGGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACA
CATTTAAATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055382-exon-scaffold_253-1491911889:682229..682277TCONS_00055382-exon-scaffold_253-1491911889:682229..682277Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:682229..682277TCONS_00055382-exon-scaffold_253-1510915933:682229..682277Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:682229..682277TCONS_00055382-exon-scaffold_253-1575043694:682229..682277Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:682991..683046TCONS_00055382-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:682991..683046TCONS_00055382-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:682991..683046TCONS_00055382-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:683348..683414TCONS_00055382-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:683348..683414TCONS_00055382-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:683348..683414TCONS_00055382-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:683657..683812TCONS_00055382-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:683657..683812TCONS_00055382-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:683657..683812TCONS_00055382-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:686292..686366TCONS_00055382-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:686292..686366TCONS_00055382-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:686292..686366TCONS_00055382-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:687052..687159TCONS_00055382-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:687052..687159TCONS_00055382-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:687052..687159TCONS_00055382-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:687348..687538TCONS_00055382-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:687348..687538TCONS_00055382-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:687348..687538TCONS_00055382-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:688523..688733TCONS_00055382-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:688523..688733TCONS_00055382-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:688523..688733TCONS_00055382-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:689270..689499TCONS_00055382-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:689270..689499TCONS_00055382-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:689270..689499TCONS_00055382-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:689775..690220TCONS_00055382-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:689775..690220TCONS_00055382-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:689775..690220TCONS_00055382-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:690548..690675TCONS_00055382-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:690548..690675TCONS_00055382-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:690548..690675TCONS_00055382-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:690864..691034TCONS_00055382-exon-scaffold_253-1491911889:690864..691034Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:690864..691034TCONS_00055382-exon-scaffold_253-1510915933:690864..691034Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:690864..691034TCONS_00055382-exon-scaffold_253-1575043694:690864..691034Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:692388..692676TCONS_00055382-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:692388..692676TCONS_00055382-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:692388..692676TCONS_00055382-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:692889..692983TCONS_00055382-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:692889..692983TCONS_00055382-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:692889..692983TCONS_00055382-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:693341..693470TCONS_00055382-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:693341..693470TCONS_00055382-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:693341..693470TCONS_00055382-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1491911889:693689..694328TCONS_00055382-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1510915933:693689..694328TCONS_00055382-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055382-exon-scaffold_253-1575043694:693689..694328TCONS_00055382-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682229..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.56418	0.0329462	0.997353	0.0686051	0.0844865	0	0.000628133	0.000673691	0.733446	0.0291772	0.225203	0.117602	0.584949	2.49029e-08	0.493473	0.0582084	0	0	2.31878e-08	2.99297e-10	0.302902	0.131841	8.01156e-06	3.66464e-08	1.04826e-08	1.01084e-08
Blast
[Close]
BLAST of TCONS_00055382 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.191e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 2 
Query:  104 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1234
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.191e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
back to top