TCONS_00005533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005533
Unique NameTCONS_00005533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005533 ID=TCONS_00005533|Name=TCONS_00005533|organism=Clytia hemisphaerica|type=transcript|length=423bp
TAGTAAGAAGCGGGTTTGAGGCAAGAGGAAGGTTGTTATTTCAATTCCCA
CTAAATAATTATATTCTCATTTTGCCCAAAAATAATTTGTAGAAATAaga
gtttttgaaaaagttttggaaaagtAGCTTTATATAATTTAGATATTTGG
ATAACTCGAAGATTTCATCTAAAGATTGTACTGGTTATGTTAAAATACCT
cccatttttacattttctaaGGACTAGGGTGTAACGAAGTTTACTGTCTG
ACATAACTTTTAGTAACTGgtttttaacacaaaatttgtcatctttttgc
caaaatatttctcCATATTCATTGAgacatttgcaaaaaaaaatattgtt
agggtctttaaagtctttttaaaattttagggGTCTAAGCTATATCACGA
CCAGAAATTTCCGCTAGgaccaa
Run BLAST on NCBI

transcript from alignment at sc0000053:508175..508597

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005533 ID=TCONS_00005533|Name=TCONS_00005533|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0000053:508175..508597 (Clytia hemisphaerica)
ttggtcCTAGCGGAAATTTCTGGTCGTGATATAGCTTAGACccctaaaat
tttaaaaagactttaaagaccctaacaatatttttttttgcaaatgtcTC
AATGAATATGgagaaatattttggcaaaaagatgacaaattttgtgttaa
aaacCAGTTACTAAAAGTTATGTCAGACAGTAAACTTCGTTACACCCTAG
TCCttagaaaatgtaaaaatgggAGGTATTTTAACATAACCAGTACAATC
TTTAGATGAAATCTTCGAGTTATCCAAATATCTAAATTATATAAAGCTac
ttttccaaaactttttcaaaaactctTATTTCTACAAATTATTTTTGGGC
AAAATGAGAATATAATTATTTAGTGGGAATTGAAATAACAACCTTCCTCT
TGCCTCAAACCCGCTTCTTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003151XLOC_003151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005533-exon-sc0000053-1491911889:508175..508597TCONS_00005533-exon-sc0000053-1491911889:508175..508597Clytia hemisphaericaexon
TCONS_00005533-exon-sc0000053-1510915933:508175..508597TCONS_00005533-exon-sc0000053-1510915933:508175..508597Clytia hemisphaericaexon
TCONS_00005533-exon-sc0000053-1575043694:508175..508597TCONS_00005533-exon-sc0000053-1575043694:508175..508597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:508175..508597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165784	0	0	0	0	0	1.70513	1.79586	0.139703	0	0.503884	0	0	0	0	0	0.248907	0.510243	0	0	0.801446	0.23455	0.760338	0.172814	0	0.317712	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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