TCONS_00005531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005531
Unique NameTCONS_00005531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005531 ID=TCONS_00005531|Name=TCONS_00005531|organism=Clytia hemisphaerica|type=transcript|length=629bp
CACAAGCAAGATGAAGTGTTGGAAAAGCTACGACGGAAAGATTGAATTAC
ATAGTCTTGAGTCAAgagagtttttttttattttaaaatcggAATTTGTA
GCCGACGTTCCGTATTGGGTGATCAATTTGGATGCACACATTTGGAGTGG
TAACAGTCGAGTTTAAAACCAATAGGACTAGAGAGGAAGCTCCAACCTTT
CTATAAAGCATGGAAAGGTTAAGCCTTGAGATTTGTACCGCTTTTTTTGg
aatgacagattgaatttagtgctttctttgtttttatgcgGCATATTTTC
GAAGTCTGGCGGTGGATTTGATTTTCAATCTGAGAGGCCCCTCAAGCAGT
TTACGTAATGACGTGAAAGTCCCTATGAATTTTTTGTAGCGTGACTACtt
tgatttggaatttttttttgtgattgcgtgatgagaggtcaaaacgtgat
cgtgatttgaaagatttttaagccgtgatacgtgatttggactttttcaa
aggaatgcgtaattagccattttttttgctgattttcgtgatcgtgattg
aagacaaaaaattgcgtgatatcgtgatcagagttaccgctggggggggg
gtcatCTGACGTTTGGGTAAAAAAAAACG
Run BLAST on NCBI

transcript from alignment at sc0000053:469813..470441

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005531 ID=TCONS_00005531|Name=TCONS_00005531|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at sc0000053:469813..470441 (Clytia hemisphaerica)
CGTTTTTTTTTACCCAAACGTCAGatgaccccccccccagcggtaactct
gatcacgatatcacgcaattttttgtcttcaatcacgatcacgaaaatca
gcaaaaaaaatggctaattacgcattcctttgaaaaagtccaaatcacgt
atcacggcttaaaaatctttcaaatcacgatcacgttttgacctctcatc
acgcaatcacaaaaaaaaattccaaatcaaaGTAGTCACGCTACAAAAAA
TTCATAGGGACTTTCACGTCATTACGTAAACTGCTTGAGGGGCCTCTCAG
ATTGAAAATCAAATCCACCGCCAGACTTCGAAAATATGCcgcataaaaac
aaagaaagcactaaattcaatctgtcattcCAAAAAAAGCGGTACAAATC
TCAAGGCTTAACCTTTCCATGCTTTATAGAAAGGTTGGAGCTTCCTCTCT
AGTCCTATTGGTTTTAAACTCGACTGTTACCACTCCAAATGTGTGCATCC
AAATTGATCACCCAATACGGAACGTCGGCTACAAATTccgattttaaaat
aaaaaaaaactctcTTGACTCAAGACTATGTAATTCAATCTTTCCGTCGT
AGCTTTTCCAACACTTCATCTTGCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003149XLOC_003149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005531-exon-sc0000053-1491911889:469813..470441TCONS_00005531-exon-sc0000053-1491911889:469813..470441Clytia hemisphaericaexon
TCONS_00005531-exon-sc0000053-1510915933:469813..470441TCONS_00005531-exon-sc0000053-1510915933:469813..470441Clytia hemisphaericaexon
TCONS_00005531-exon-sc0000053-1575043694:469813..470441TCONS_00005531-exon-sc0000053-1575043694:469813..470441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:469813..470441 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354847	0.0823724	0.450268	0.436939	0.713147	0.0900161	0	1.04235	0.580142	0.631021	0	2.19403	0.754923	0.957908	0.968218	0.953564	0.831544	0.597982	0.582954	0.678664	2.52278	0.734114	0.98051	1.84911	0.461221	0.330619	0.698322	0.650195	0.815837	1.29608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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