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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055353 ID=TCONS_00055353|Name=TCONS_00055353|organism=Clytia hemisphaerica|type=transcript|length=1108bp
ATCAATTGTTTCACATATTTATCCTGGTCACCCTTCTCTTTCTTCAGAGA
CGTCAGCTCCTTTTTCAATTCATCCACAGTATCAGTGAGAAGTGATGTTT
TGGCTTCCATCTCAATCTTGCCCGTTTCGATCTCAGTCATCATTTGTTCA
AGTTCTCTTGCGTTCTCAACTTTCTCCCTTGTCTCAAGATGAGCGTTTGA
CACATCTTTACGCAGGTCTTTCATCTTTGATCTCATGTCTTCAATGATAC
GATTCTTCTCATTGAACACTGTTTCGAATTCATTCCTCAAATCTTTCAAA
CTCTTTCCTTTGTTAATGATGACTTGCTCGATCTCCGATTCTTTACTGCG
CTCAACAGCTTGTAACATCGATTTCAACTGGCCAACCTGTGACGAGAGCT
CATCCTTTTTGGACTCGAGCGAACGAACAGATTCTTGAAGCGTAGCATTC
TCGTCTTCCTTCTTCGTCAAATTCAGTTGAATATCTTCACACTGTCCTGT
CAAATTCTTGATCTTGTCATCTTTAGCATTGAGGAGCGTATTGAAGTCAC
CTTGTAGCGTCTCCAGTTGGTGAGCGCGATCTTTCTCCGCCGTCAACATG
ACTTGTTGCACCTTCTCTTCTTTCTCAGTCAATAAAGCATGTAATTGTTC
TTCAagtttcaacactttctcttgGTAATCACCTTCTGTTTTCTGGAAAT
CTTTCTTCAGTGATTCCTCAAGTCCCTTCATTTCCGAAGCCTTATCTTGG
TCATAATTCGTCAACTTCTTTTGCAATTCTCTCATAATCTCATCACGCTC
TGACATTGTGCTTTCAAACGTCGAtctcaaattttggaattctTCAGCTT
TCTTTAACTGAAGTTCTTCAACTTTACTATCACCGGTAAGTTTCAATTGA
TTCTTTTCTGACTCAGCTAGGTCGAACTCCTCCTTCATGTTTTCGAACTG
TTGAGTGAACACATCAAACTTCGTTTCCAGATCCTCTTTGTCTTTGCTGA
GAGTAGCCACGCTTTGATCTGATTCGCGTAAACGTTGCTCCAGGTTCTCG
TAATATTTCTCTTTGGAGAGGATATCTGCTGCTTTTTCCACTCGGCCTTC
AAGCATAC Run BLAST on NCBI transcript from alignment at scaffold_253:578421..580323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055353 ID=TCONS_00055353|Name=TCONS_00055353|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at scaffold_253:578421..580323+ (Clytia hemisphaerica)
ATCAATTGTTTCACATATTTATCCTGGTCACCCTTCTCTTTCTTCAGAGA
CGTCAGCTCCTTTTTCAATTCATCCACAGTATCAGTGAGAAGTGATGTTT
TGGCTTCCATCTCAATCTTGCCCGTTTCGATCTCAGTCATCATTTGTTCA
AGTTCTCTTGCGTTCTCAACTTTCTCCCTTGTCTCAAGATGAGCGTTTGA
CACATCTTTACGCAGGTCTTTCATCTTTGATCTCATGTCTTCAATGATAC
GATTCTTCTCATTGAACACTGTTTCGAATTCATTCCTCAAATCTTTCAAA
CTCTTTCCTTTGTTAATGATGACTTGCTCGATCTCCGATTCTTTACTGCG
CTCAACAGCTTGTAACATCGATTTCAACTGGCCAACCTGTGACGAGAGCT
CATCCTTTTTGGACTCGAGCGAACGAACAGATTCTTGAAGCGTAGCATTC
TCGTCTTCCTTCTTCGTCAAATTCAGTTGAATATCTTCACACTGTCCTGT
CAAATTCTTGATCTTGTCATCTTTAGCATTGAGGAGCGTATTGAAGTCAC
CTTGTAGCGTCTCCAGTTGGTGAGCGCGATCTTTCTCCGCCGTCAACATG
ACTTGTTGCACCTTCTCTTCTTTCTCAGTCAATAAAGCATGTAATTGTTC
TTCAagtttcaacactttctcttgGTAATCACCTTCTGTTTTCTGGAAAT
CTTTCTTCAGTGATTCCTCAAGTCCCTTCATTTCCGAAGCCTTATCTTGG
TCATAATTCGTCAACTTCTTTTGCAATTCTCTCATAATCTCATCACGCTC
TGACATTGTGCTTTCAAACGTCGAtctcaaattttggaattctTCAGCTT
TCTTTAACTGAAGTTCTTCAACTTTACTATCACCGGTAAGTTTCAATTGA
TTCTTTTCTGACTCAGCTAGGTCGAACTCCTCCTTCATGTTTTCGAACTG
TTGAGTGAACACATCAAACTTCGTTTCCAGATCCTCTTTTTCTTTACTGA
GAGTAGCCACGCTTTGATCTGATTCACGTAAACGTTGCTCCAGGTTCTCG
TAATATTTCTCTTTGGAGAGGATATCTGCTGCTTTTTCCACTCGGCCTTC
AAGCATACTGATCAATATGTTCTTTTCGGACATCCCTTTCTCTTTATCGG
ACAATGTTTGTTGTAATTCAGACAGCTCATCTGACTGATGTTTCACTTTC
TGTTCCAATTGTAATCGATGGATTTCGAAAGCATTTTCGTAATCTTCACG
GTCTTTGAACGCATTCTCAAGATCTTCACGTAATCCTGAACTAATGCTAT
CAAAACGTTTACGCATTGCACCGCTCAGGTCTTCTTTCTCTGTTACCACT
CGATCCAGCTCCCCTTTCAACCAATCACGTTGCGTGGTGACTTCATTCAA
CTGTCGTGAAACTTCAGCTAGTTCTTCGCTTGTCTTGTTATCGCTAACTT
CTTgcgtttttgtttctttcccgTCTTTAGACTGTGCGAGATAATCAGCT
CTGAGTTGCTCCAATTTCGAACGTAGCGTATTGACAACGGTATCCTTTTG
CgagatgacgtcatcgaaactATCACGAAGTTCGAGGAACGCTTTATTCT
TTTGATTGACAGCTTGCTGGAGCGACGTTTCATCTGACTTGATGGCATCG
GTGGTGGAAGAAAGTACTGCAACTTGTTTGTTCAAATTCGCGTTTTCACT
TCGNGACTCAGCTAGGTCGAACTCCTCCTTCATGTTTTCGAACTGTTGAG
TGAATACATCAAACTTCGTTTCCAGATCCTCTTTGTCTTTGCTGAGAGTA
GCCACGCTTTGATCTGATTCGCGTAAACGTTGCTCCAGGTTCTCGTAATA
TTTCTCTTTGGAGAGGATATCTGCTGCTTTTTCCACTCGGCCTTCAAGCA
TAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055353-exon-scaffold_253-1491911889:578421..579382 | TCONS_00055353-exon-scaffold_253-1491911889:578421..579382 | Clytia hemisphaerica | exon |
| TCONS_00055353-exon-scaffold_253-1510915933:578421..579382 | TCONS_00055353-exon-scaffold_253-1510915933:578421..579382 | Clytia hemisphaerica | exon |
| TCONS_00055353-exon-scaffold_253-1575043694:578421..579382 | TCONS_00055353-exon-scaffold_253-1575043694:578421..579382 | Clytia hemisphaerica | exon |
| TCONS_00055353-exon-scaffold_253-1491911889:580178..580323 | TCONS_00055353-exon-scaffold_253-1491911889:580178..580323 | Clytia hemisphaerica | exon |
| TCONS_00055353-exon-scaffold_253-1510915933:580178..580323 | TCONS_00055353-exon-scaffold_253-1510915933:580178..580323 | Clytia hemisphaerica | exon |
| TCONS_00055353-exon-scaffold_253-1575043694:580178..580323 | TCONS_00055353-exon-scaffold_253-1575043694:580178..580323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:578421..580323 + |
Blast
The following BLAST results are available for this feature:
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