TCONS_00055344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055344
Unique NameTCONS_00055344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055344 ID=TCONS_00055344|Name=TCONS_00055344|organism=Clytia hemisphaerica|type=transcript|length=2449bp
ATTCGAAAATTCACTGTGTACCTAGACATGATTTCTCATGTCAAAGAATC
TTATGAAAAATAACAGTCTACCAAAAATGAAACGGTCAGTTATCGTCAAA
ATAAATGTTGAATTTAAATACAGCTGTCTTTGTCAACCGACTCAATTACA
GGGAATAAACAGATCTGTTTGTACATCAGGTCTTTGCATCAATATACTTT
CTTCGAAAACGATAGAGCATTGTTTTGTGAAATGTAATTTCGAAGAAAGT
TTACAAAACAATACAAAAGAAATCACGACGTCGCTATTAAAAATGATAGA
AATGAATTATATCCTATCGCCTACGCTATTTCAGGGATGGGAAACCAGGC
AAACGGTGTTTGATTTCTTTTCAAAGAGATTgcaaataaattcaaaattg
gaaaaggTTTTTCCACAAGTCTGTCTAGCATAAATCAACCTAGTGCATTT
TATTGAAATTATGGTTTATTAGACGGTAAAAAGTTTCAAAGATAATAacg
acaatttttttaaataaggttACCAAAATGTATAAGATCTTTTAATTTGC
ACTTGATTGTGATTTTGAAGTAGGTTCGAAATGGCACCAGCCTACTTTGC
ACGAAATTCGCTTTCACAAAGAgctcaaaatacaaaatttacaaaaagta
ATATGAGGGCGAAGAAGTTCAATGTAGCACCAGCAAGTTCCGTGCACCTT
TTGAGTAAAGGGAATATTCTTCTAATTCTTTTGGTGTATCactaaaactt
tttaaacattttcttacCACATAGGCTAAATTAAAAGATTAGAGAAAGAT
ATTTTCCaggaaaatcatcttaaagGTTAAACAAAAAAAAGCAATTTCTC
TACAGGTTCAAAGATTATGTCATGAAACTTTTAGAATATTCGAACTTAAA
TGATTTTAAATGTTGTAAATAATGTAACCCCACAATAAATTTTAGCCTTA
ATCTTAGGCTAGGTGCCCTTCAGAAATCTGGTGCTGAAACCGTAGATGCG
GTAGAAACCAATGAAGATCTCATTTTCAAGCTTTCTTTCATCGAAATACC
TATTTACTTTCAATAAATTACATTTAAAACTGCAAAATTCGGTCAATTCT
TCAGAAAAATCCGATTCCTTATATTATCATAACGTTCTACAATTGTAAAA
GAGTTCCCTTTTGAATATCAGTATCAATGATGAGGATATTACCCTCGTGT
TTGGCAAGGTTACAACTGAAAACGTTCTTcttattttcgaaattttcgaa
GTCTATCACCATGGAACATAATATCCAAAAAAGAATTATCGATTAATGAA
TCAACTGACACATCActtatttcgaaaattttgtgtttttcatcACTTCG
ACTACCAAAAGATCTCTATCCTGAAGATGGTTTCAAAAACAAGTGTTTAA
CCcctcaaaaaaagaaattcatgaaATCAAACATTGGTTTTCTTATTACT
GATGATGGGTGATGAACCGATTCGGATACATTTGATAATCGGGAAACAAC
ATCCCACAACCAAGAAGATGATCCAGCCTAGTAACCCGATCATAAAAAGC
GAATCAGTGAATTGCGCGAAGACGTTAGCTTTCTCTGAAGGTAGCATGAA
TAACTCGTATTTGAAAACACCCAGGCTGGGCGTCAACACAATCACCACAT
AGAAGACACCAACAAACAGAGCGACGCATCCCCTGATCTGCCAGCAATCA
ACTTTATCGGTTTTGGACCATCGATAGAATGTAGTGATTCCTTTCCAAGC
AGACACGATGACCAGCGCGAACATCATAACCACGATAACAACACGTGAGA
AATAGATGTTTTCTTCCAATTCATGCTTATTGACACATTTCCCAACATCT
TGCGCACAATCCCAACAATGCAACCCACGTTCTCCTTGCCGTATAGAATA
CAATATTACTGCTAGACAAGATCCAGGGATATCAAGCGCAAAACTGAGTA
AAAAACCGAACGCGAATTTGACGCGTACCACGTGATCACGATTCTCTTCG
ATATACTGCGCGCGGTGCCATGATCGGAGAACAAACCATAGATATGCAAG
CAGGTAACATAAAAAGATAGCTCCGGAAATGACCAAAAAGAATAGATAGG
TATCCAGCAACCGACCATACAATCCAACCTTATCCTGGTAATCTTTCTTG
TCCCAGTTGGACGATTGACATATCCCAAACCCTGTGGTCCGATTCAACTG
ATACGTATAATCACTTTTCAACCATTTCTCATACCGTGTACGTGCCTTGA
GGTTCTCAGTGTATACAGCAAACTCCGTACCCAAATCCAATGTGTAGAGA
ATAAAAATGAGGAGGTATTCCCTCACCAGACCTTTTACATCGATCGTCAT
CCTTCACAAGTGAGTGGACCTGTAAACTGAAAGTAAAAGAGAATACTTCT
AAGTACCGTGGAAAGAGAAGGACGTCTTTATCGATGATGCAACTTCCGA
Run BLAST on NCBI

transcript from alignment at scaffold_253:507658..510165+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055344 ID=TCONS_00055344|Name=TCONS_00055344|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at scaffold_253:507658..510165+ (Clytia hemisphaerica)
ATTCGAAAATTCACTGTGTACCTAGACATGATTTCTCATGTCAAAGAATC
TTATGAAAAATAACAGTCTACCAAAAATGAAACGGTCAGTTATCGTCAAA
ATAAATGTTGAATTTAAATACAGCTGTCTTTGTCAACCGACTCAATTACA
GGGAATAAACAGATCTGTTTGTACATCAGGTCTTTGCATCAATATACTTT
CTTCGAAAACGATAGAGCATTGTTTTGTGAAATGTAATTTCGAAGAAAGT
TTACAAAACAATACAAAAGAAATCACGACGTCGCTATTAAAAATGATAGA
AATGAATTATATCCTATCGCCTACGCTATTTCAGGGATGGGAAACCAGGC
AAACGGTGTTTGATTTCTTTTCAAAGAGATTgcaaataaattcaaaattg
gaaaaggTTTTTCCACAAGTCTGTCTAGCATAAATCAACCTAGTGCATTT
TATTGAAATTATGGTTTATTAGACGGTAAAAAGTTTCAAAGATAATAacg
acaatttttttaaataaggttACCAAAATGTATAAGATCTTTTAATTTGC
ACTTGATTGTGATTTTGAAGTAGGTTCGAAATGGCACCAGCCTACTTTGC
ACGAAATTCGCTTTCACAAAGAgctcaaaatacaaaatttacaaaaagta
ATATGAGGGCGAAGAAGTTCAATGTAGCACCAGCAAGTTCCGTGCACCTT
TTGAGTAAAGGGAATATTCTTCTAATTCTTTTGGTGTATCactaaaactt
tttaaacattttcttacCACATAGGCTAAATTAAAAGATTAGAGAAAGAT
ATTTTCCaggaaaatcatcttaaagGTTAAACAAAAAAAAGCAATTTCTC
TACAGGTTCAAAGATTATGTCATGAAACTTTTAGAATATTCGAACTTAAA
TGATTTTAAATGTTGTAAATAATGTAACCCCACAATAAATTTTAGCCTTA
ATCTTAGGCTAGGTGCCCTTCAGAAATCTGGTGCTGAAACCGTAGATGCG
GTAGAAACCAATGAAGATCTCATTTTCAAGCTTTCTTTCATCGAAATACC
TATTTACTTTCAATAAATTACATTTAAAACTGCAAAATTCGGTCAATTCT
TCAGAAAAATCCGATTCCTTATATTATCATAACGTTCTACAATTGTAAAA
GAGTTCCCTTTTGAATATCAGTATCAATGATGAGGATATTACCCTCGTGT
TTGGCAAGGTTACAACTGAANTTTGATCAGTATCAATGATGGGGATATTA
CCCTCGTGTTTGGCAAGGTTACAACTGAAAACGTTCTTcttattttcgaa
attttcgaaGTCTATCACCATGGAACATAATATCCAAAAAAGAATTATCG
ATTAATGAATCAACTGACACATCActtatttcgaaaattttgtgtttttc
atcACTTCGACTACCAAAAGATCTCTATCCTGAAGATGGTTTCAAAAACA
AGTGTTTAACCcctcaaaaaaagaaattcatgaaATCAAACATTGGTTTT
CTTATTACTGATGATGGGTGATGAACCGATTCGGATACATTTGATAATCG
GGAAACAACATCCCACAACCAAGAAGATGATCCAGCCTAGTAACCCGATC
ATAAAAAGCGAATCAGTGAATTGCGCGAAGACGTTAGCTTTCTCTGAAGG
TAGCATGAATAACTCGTATTTGAAAACACCCAGGCTGGGCGTCAACACAA
TCACCACATAGAAGACACCAACAAACAGAGCGACGCATCCCCTGATCTGC
CAGCAATCAACTTTATCGGTTTTGGACCATCGATAGAATGTAGTGATTCC
TTTCCAAGCAGACACGATGACCAGCGCGAACATCATAACCACGATAACAA
CACGTGAGAAATAGATGTTTTCTTCCAATTCATGCTTATTGACACATTTC
CCAACATCTTGCGCACAATCCCAACAATGCAACCCACGTTCTCCTTGCCG
TATAGAATACAATATTACTGCTAGACAAGATCCAGGGATATCAAGCGCAA
AACTGAGTAAAAAACCGAACGCGAATTTGACGCGTACCACGTGATCACGA
TTCTCTTCGATATACTGCGCGCGGTGCCATGATCGGAGAACAAACCATAG
ATATGCAAGCAGGTAACATAAAAAGATAGCTCCGGAAATGACCAAAAAGA
ATAGATAGGTATCCAGCAACCGACCATACAATCCAACCTTATCCTGGTAA
TCTTTCTTGTCCCAGTTGGACGATTGACATATCCCAAACCCTGTGGTCCG
ATTCAACTGATACGTATAATCACTTTTCAACCATTTCTCATACCGTGTAC
GTGCCTTGAGGTTCTCAGTGTATACAGCAAACTCCGTACCCAAATCCAAT
GTGTAGAGAATAAAAATGAGGAGGTATTCCCTCACCAGACCTTTTACATC
GATCGTCATCCTTCACAAGTGAGTGGACCTGTAAACTGAAAGTAAAAGAG
AATACTTCTAAGTACCGTGGAAAGAGAAGGACGTCTTTATCGATGATGCA
ACTTCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034866XLOC_034866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055344-exon-scaffold_253-1491911889:507658..508865TCONS_00055344-exon-scaffold_253-1491911889:507658..508865Clytia hemisphaericaexon
TCONS_00055344-exon-scaffold_253-1510915933:507658..508865TCONS_00055344-exon-scaffold_253-1510915933:507658..508865Clytia hemisphaericaexon
TCONS_00055344-exon-scaffold_253-1575043694:507658..508865TCONS_00055344-exon-scaffold_253-1575043694:507658..508865Clytia hemisphaericaexon
TCONS_00055344-exon-scaffold_253-1491911889:508925..510165TCONS_00055344-exon-scaffold_253-1491911889:508925..510165Clytia hemisphaericaexon
TCONS_00055344-exon-scaffold_253-1510915933:508925..510165TCONS_00055344-exon-scaffold_253-1510915933:508925..510165Clytia hemisphaericaexon
TCONS_00055344-exon-scaffold_253-1575043694:508925..510165TCONS_00055344-exon-scaffold_253-1575043694:508925..510165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:507658..510165 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	26.3717	27.7679	21.1398	18.3799	8.96839	14.996	0	0	0	0	0.804984	2.73363	0	0	0	0	0	0	0	0	1.89923	2.35215	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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