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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055493 ID=TCONS_00055493|Name=TCONS_00055493|organism=Clytia hemisphaerica|type=transcript|length=4532bpRun BLAST on NCBI protein sequence of TCONS_00055493-protein >TCONS_00055493-protein ID=TCONS_00055493-protein|Name=TCONS_00055493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1246bp MVHTRHSFLKDTEEHPLENGKLSGQDEEEEEEVADEEEQRRENDIDLDATRun BLAST on NCBI transcript from alignment at scaffold_253:366895..381196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055493 ID=TCONS_00055493|Name=TCONS_00055493|organism=Clytia hemisphaerica|type=transcript|length=14302bp|location=Sequence derived from alignment at scaffold_253:366895..381196- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:366895..381196- >TCONS_00055493 ID=TCONS_00055493|Name=TCONS_00055493|organism=Clytia hemisphaerica|type=CDS|length=74820bp|location=Sequence derived from alignment at scaffold_253:366895..381196- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055493 vs. Swiss-Prot (Human)
Match: ATD2B (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=3) HSP 1 Score: 888.641 bits (2295), Expect = 0.000e+0 Identity = 442/819 (53.97%), Postives = 587/819 (71.67%), Query Frame = 2
Query: 1076 YNLRKEKQQTKRYQPP--LPTSRSRRREVMFEMH-SPMRQPH-KMKRIPQHASSPHHKXXXXXXXXXXXXDDEAAFERRKAKSMNQARSRCLPMNFQSNDMV-GVLKNRERARELGAGSSLADVEPMNIDSNTSFEDVGGLDHHIRSLKEMVVFPLLYPEIFQKFSISPPRGVLFYGPPGTGKTLVARALANECTKKGQKVAFFMRKGADCLSKWVGESERQLRLLFDQAYTMRPSIIFFDEIDGIAPVRSTRQDQIHSSIVSTLLALMDGLDARGEIVVIGATNRLDSIDPALRRPGRFDREFLFGLPNRKARQKIIEINTSSWQPKLSKEFTLQLADKCVGYCGADIKALCTEAALFALRRRYPQIYKTSKKLALNTNEIKISSVDFKNALKSITPASNRSNISPGVSLPEHLKPLLSAYVEKATDIVMKIFPAGKKITEYDPEEEFD---LSDSESQ---SIYE----KPKSRHRDTSSNDQQEFFKDQQDLVEQNLTHRPRILLAGTNGNGQTAYIAPSLLYAMEHLSTHMIDLPALFGTSTRTPEEAVAQLFREARRTAPSILYLPHLESWWSSINDTTRASFMTLLYDLPSHVPVLLVSTCDSPYETLSEELQDLFSTSHNEVLMVSSPTDEQRNEFFQDIIMKQALKKPVEQNKRVKRTLEELPEVETVKERELSQEEVNKLMEVEENILRELRLYLRGVTWKLLADRKYKEFSKPVDPDEVDDYFQVITTPMDLSTVMTRINAHHYNSCTHYLQDIDLITNNCLEYNPDRDQFDKQLRNRACELRDVAYQLVHNDLDPDFEKQCVEIYERR 3487
YNLR+ K RYQ P +P + +R +F++H SP R+ H + K+ H+S ++S DE FERRK+KSM +AR+RCLPMNF++ D+ G+L+ R + G+SLADV+PMNID + F+ +GGL HHI +LKEMVVFPLLYPEIF+KF I PPRG LFYGPPGTGKTLVARALANEC++ +KVAFFMRKGADCLSKWVGESERQLRLLFDQAY MRPSIIFFDEIDG+APVRS+RQDQIHSSIVSTLLALMDGLD RGEIVVIGATNRLDSIDPALRRPGRFDREFLF LP++KAR+ I++I+T W PKLS F +LA+KCVGYCGADIKALCTEAAL ALRRRYPQIY +S KL L+ + I +S+ DF +A+++I PAS R+ +S G +L ++PLL ++ K+FP +I++ D +E+ + L DSE + SI+E + + +S+ + + Q ++RPR+LL+G G+GQT+++AP+LL+ +E S H +DLPAL+ S +TPEE+ AQ+FREARRT PSI+Y+PH+ WW ++++T RA+F+TLL D+PS P+ L+ST ++ Y L EE++ +F + EVL + P +E R +FFQ++I+ QA P + +E LP R+LS+ E +++ + EEN LRELRL+LR VT +L D+++ FSKPVD +EV DY +VI PMDLSTV+T+I+ H+Y + +L+DIDLI +N LEYNPD+D DK +R+RAC L+D A+ ++ +LDP+F K C EI E R
Sbjct: 284 YNLRQRKT-VDRYQAPPIVPAHQKKRENTLFDIHRSPARRSHIRRKKHAIHSSD-------------TTSSDEERFERRKSKSMARARNRCLPMNFRAEDLASGILRER-----VKVGASLADVDPMNIDKSVRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALRRRYPQIYASSHKLQLDVSSIVLSAQDFYHAMQNIVPASQRAVMSSGHALSPIIRPLLERSFNNILAVLQKVFPHA-EISQSDKKEDIETLILEDSEDENALSIFETNCHSGSPKKQSSSAAIHKPYLHFTMSPYHQPTSYRPRLLLSGERGSGQTSHLAPALLHTLERFSVHRLDLPALYSVSAKTPEESCAQIFREARRTVPSIVYMPHIGDWWEAVSETVRATFLTLLQDIPSFSPIFLLSTSETMYSELPEEVKCIFRIQYEEVLYIQRPIEEDRRKFFQELILNQASMAPPRRKHAALCAMEVLPLALPSPPRQLSESEKSRMEDQEENTLRELRLFLRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKEAR 1082 The following BLAST results are available for this feature:
BLAST of TCONS_00055493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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