TCONS_00055593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055593
Unique NameTCONS_00055593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055593 ID=TCONS_00055593|Name=TCONS_00055593|organism=Clytia hemisphaerica|type=transcript|length=909bp
CAGCACTCTTTTGGACTTTGGGTTAATTGATAATGTGAAGGCAAGTGGAA
ACTTTCTACGTACCATTGATGCAAAGCCCCTCACGCATAATTGATCTTCA
TATTGTTCGCATAGTATAACACCCTGCTGGTAGGAGATAGTCACCATAAG
TTTAACTTGCTTTGAGCCTTCCTTCTTACCCTTTGCGGTACAACCGTAGG
TAAGGCCCTCATCCGTTCGTCTCCACTCTCGGACACTTGTTGTCCTGGCC
TGGTCCAACGGATTTTTCATATAAATAAAACCAATTGCATCTAAAAAGAA
GCTTATTCCTTTCTTCCGAAATTCACCAAGTCCGAGCTTCTTCAAACAGC
TTCAAATGTTTCGCAAATCTCAGCCAAGTCTTAAGATCCTTCTGCTTTAG
TATTCCCTTTCTTCGTGTACTTTGATATTCGCAACCAATGTGCTTTAAAT
GACGCCTGTTTGGCTTGAGGCCGTTGGTAACGATGGCTGCAATCGCTTTG
AAGTGATAATGCCCTCAAAATCGCGCAGGACTTTTATCTGTCGTCTAACT
ACGCGATAATCTCGTTTGTTTCGAAGAGGTGGTCTATCGGGGTTGTTTAT
CCTTTTGTCGTCGGGATCCTCTCCATTAAGTGACTTCGTGATGTGTGATA
GTACACCCACAGTGCATTGAAAGCTTGACCCAATAGTGTCACCGTCATGT
CTATCAGGTGTGAACAGTCCTTTGATGTTTTATATGCTCAGTACTTGCTC
ACTCAAATCTTTCTCCTCCATCTGTGAGGTTTGTTCAATGACCCGATCCT
TTTGGCTTTCAAGAAATTCCCAAACTCGGGAGAGTGGACCAAGCACGTTT
GAAATCTTTTCTTGAAGTGACGTGAAGGCTTTGTCTAAATGAGAGAGTTC
ATATTCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:230630..231538

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055593 ID=TCONS_00055593|Name=TCONS_00055593|organism=Clytia hemisphaerica|type=transcript|length=909bp|location=Sequence derived from alignment at scaffold_253:230630..231538 (Clytia hemisphaerica)
CTCGAATATGAACTCTCTCATTTAGACAAAGCCTTCACGTCACTTCAAGA AAAGATTTCAAACGTGCTTGGTCCACTCTCCCGAGTTTGGGAATTTCTTG AAAGCCAAAAGGATCGGGTCATTGAACAAACCTCACAGATGGAGGAGAAA GATTTGAGTGAGCAAGTACTGAGCATATAAAACATCAAAGGACTGTTCAC ACCTGATAGACATGACGGTGACACTATTGGGTCAAGCTTTCAATGCACTG TGGGTGTACTATCACACATCACGAAGTCACTTAATGGAGAGGATCCCGAC GACAAAAGGATAAACAACCCCGATAGACCACCTCTTCGAAACAAACGAGA TTATCGCGTAGTTAGACGACAGATAAAAGTCCTGCGCGATTTTGAGGGCA TTATCACTTCAAAGCGATTGCAGCCATCGTTACCAACGGCCTCAAGCCAA ACAGGCGTCATTTAAAGCACATTGGTTGCGAATATCAAAGTACACGAAGA AAGGGAATACTAAAGCAGAAGGATCTTAAGACTTGGCTGAGATTTGCGAA ACATTTGAAGCTGTTTGAAGAAGCTCGGACTTGGTGAATTTCGGAAGAAA GGAATAAGCTTCTTTTTAGATGCAATTGGTTTTATTTATATGAAAAATCC GTTGGACCAGGCCAGGACAACAAGTGTCCGAGAGTGGAGACGAACGGATG AGGGCCTTACCTACGGTTGTACCGCAAAGGGTAAGAAGGAAGGCTCAAAG CAAGTTAAACTTATGGTGACTATCTCCTACCAGCAGGGTGTTATACTATG CGAACAATATGAAGATCAATTATGCGTGAGGGGCTTTGCATCAATGGTAC GTAGAAAGTTTCCACTTGCCTTCACATTATCAATTAACCCAAAGTCCAAA AGAGTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034965XLOC_034965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055593-exon-scaffold_253-1491911889:230630..231538TCONS_00055593-exon-scaffold_253-1491911889:230630..231538Clytia hemisphaericaexon
TCONS_00055593-exon-scaffold_253-1510915933:230630..231538TCONS_00055593-exon-scaffold_253-1510915933:230630..231538Clytia hemisphaericaexon
TCONS_00055593-exon-scaffold_253-1575043694:230630..231538TCONS_00055593-exon-scaffold_253-1575043694:230630..231538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:230630..231538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0988468 0 0 0.683482 0.612844 0.203343 0.59157 0.270073 0.264511 0.205393 0 0.211076 0.410539 0 0 0.0398539 0.0415907 0 0.112756 0.0547023 0 0 0 0.953621 1.48473 0 0.222503 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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