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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055250 ID=TCONS_00055250|Name=TCONS_00055250|organism=Clytia hemisphaerica|type=transcript|length=2155bp atttttacataaaaaGCACGATGTCCCCTCGAGCGTTGAGACCAAAAAGA AGTTTGATAAATAGTGATTTTGAAGGTTATAAACTAAACACAGATGGCTT AAAAGCAACATCTAAGCCACTTTTATCAAAAGTGTACCAAGTAAAGAGAG ATCCAAATAAATTCACTTTCAACTATGTCAAGCGTCAGCTAATgcacaat catttgtttttcaatcaatGGAGCAATGATATCTTTTTTGTTGATGAAAA CTTAAACATTGTTCTTATACAAGCTGAAAAGGCTGAATTTCAGTATTATA CTGTTGCCAAACTTGAAAGCCATGGAGAAGATCTGAACAGTTTCAGTCCA ACAATTTCTTTTCCAACAGAAAATCTCTGCATCACATCATCAGGATGCGG TATTCTTCATTTGATGAAGATTCACAAGGATGGTCAATCAAAGCAATTCC GCCCATTAGCCACAGGACTAATTCATGATTTCAACACACCCATATCCATT CTCAATTCACATCACGACCCAACAACCAATATAATACATGTTTTGGTTCT TTCCTTAAAAGACTTTGAAGAGGATGAAAAATCTGTTTCTTACGCGCTTT TGCATTGGCTTCAAATATCAAACAGTCCAAATGATGACGTTGAAAGTACT GTCCGAAATTGGAAAACTTTCAAAGGCCGTAATTTGCCACGTGAATGTTG GCTGAGTGAGGATTACACTGAGTTGTTTGTGGCTTCAGAAACTGAATTTG AGTTGGTCAATGTAGTAACATATGAGAGATTGCACACTGTAAGTTCACAA GATGAAGCTGAAGATACCATCAAATACTATCATTGGCATCAATGTAAAGA AATGCTGACCATTGTTTTCGACCTCACACTAGCTCAAGATGAGGTGGAAT GCCAATTTCTTCACAACTTTTTGTCCATTAAACTGAAAACTGGTAAAACT CTGTTGGAAGGGACAttggaaaaaatgattttacagGATGCTTCAAAATG GTATATTCAAGAAGGAAGatTAGAAATCGTGTTGGTCAAGAAAACACCGG GTGAGTTCTGGTCATCGGTCATTCCTGATGAAAAGCACGGTGTCCATGAT ATTGAGGGAGAAGAGCTTGAAAGAATGAATCAAATACATGAGCAGCTGGA ACACTTAACTTCTGAAGGCATTCAAAGGgAAGAAAAACATGCAAAAGATT TCAACATTCAACAATTAGAGGAATGCGATGAGAATTTAGAAGAAGAAATC AAAGTCTATAGTATAAACATCACAAATGGAAAAGTTCAATTAGAGacATC ACTTGGTGGCCAAATGCTGTTTTCTACATCAGTACGTGAAGATTCAGTTC CCCATTTTTGTTTACGTTATGATGTTGATGGAATCCTATGGCAACCTTCT CGTAGCAAAACAACCTTTTGGGTTCACATTGCAACCATAGATGCCTTTGG TTATGTGCTAGCTTCTAAACAGGAACATAAGTTTGTTGGTTGTTCGCCTG ATTTCAGTTATGCTGTGATTACAGATTGTAAATCAAATGTTTATGTATAC GAGTGTTCTCAAGGGCATTCTAAAAAGCGTGCACAGTATGTTGCAAGTTT CAGAGAcagtgatgaaatttttggttgTATTGTTGCAAAGAATAAATTAT GTGTATTAACAGATAACCATGTACATATTTTAGAGCTACCTGACCCAAAT ATGGATACAAATGAGCGTTAGCTGGATTATTCTTCAATGGAATTTATTCA AAGACTTTCTTTTGAAGGATATTTTTACTGGTACTGATAAATTGATTTGA GCCTCACATTCTAGACCACAATACTACAGAAAACTAGCTAATTCGTCTTA CTTACATTGATTTTTACAAAAGTAAATACTTTAACAGCCCTCAAATTTCA GGTCGTCATTCGGCAATACCGACCAAAGAGTGTGTATGATCGGCAGTTCA TTGCCAACCATAATCATCAATAATCTCAGCAGCAGACCATTAGTGATCTT TTTGGTCAGCAAATCCGACCTTTGAACCAAACATTGTAGctttcaaatag aaaaaaaacgttGCCGTAGCCTTTAAACAACTTTGCTGACCTATAATTGA GCTCAGATCAGCATTGCCGACCTAAAAACGCCTAAGATTGGCCTAGATTG GCAAA Run BLAST on NCBI transcript from alignment at scaffold_251:848517..853483- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055250 ID=TCONS_00055250|Name=TCONS_00055250|organism=Clytia hemisphaerica|type=transcript|length=4967bp|location=Sequence derived from alignment at scaffold_251:848517..853483- (Clytia hemisphaerica) ATTTTTACATAAAAAGCACGATGTCCCCTCGAGCGTTGAGACCAAAAAGA
AGTTTGATAAATAGTGATTTTGAAGGTTATAAACTAAACACAGATGGCTT
AAAAGCAACATCTAAGCCACTTTTATCAAAAGTGTACCAAGTAAAGAGAG
ATCCAAATAAATTCACTTTCAACTATGTCAAGCGTCAGCTAATGCACAAT
CATTTGTTTTTCAATCAATGGAGCAATGATATCTTTTTTGTTGATGAAAA
CTTAAACATTGTTCTTATACAAGCTGAAAAGGTGAGTAGAAAGAGAATTT
TTTTTTTGTCTTTAACAATCTTCATATCCTGATATGTTCAAAATCACAAT
TCAAAACCCAAAACGATCTCAAAACCAAAAGTATGAATATCTTGTGGGTT
TTATTTTAGGCTGAATTTCAGTATTATACTGTTGCCAAACTTGAAAGCCA
TGGAGAAGATCTGAACAGTTTCAGTCCAACAATTTCTTTTCCAACAGAAA
ATCTCTGCATCACATCATCAGGATGCGGTATTCTTCATTTGATGAAGATT
CACAAGGATGGTCAATCAAAGCAATTCCGCCCATTAGCCACAGGACTAAT
TCATGATTTCAACACACCCATATCCATTCTCAATTCACATCACGACCCAA
CAACCAATATAATACATGTTTTGGTTCTTTCCTTAAAAGACTTTGAAGAG
GATGAAAAATCTGNGCTTTGGTCTCGTGCTCTGGCTTTGGGATGTCCTAA
TGTTTTCGATTGTTTTCAATGGAAAATCGTAAGAAACTTAAGTTTACAGG
TGTCATTTAGTTTTTGCTGGCAGGATCCTGAATGGCTTTCCTAACTGATT
TTTTAATCGATGTCAAAAATATCTTCCAGAATAAGATGGTAAAAACTTTA
ACATCTTGCCACAGTAAAAGAATTTCATAGGCACCACTAAGTAAGTTTGC
AGATTGGGGATTCCAATTTATTTTTGTTATCACCTTTCTCCTAAATTATT
TGCAGCAGGTAATTTTGATCTTAATGTGTTTTTGTTATGCTTTATCTTTT
ATTCATTTCTTTGTAGAATTATTTTATATTATCAATTTTTACATAAAAAG
CACGATGTCCCCTCGAGCGTTGAGACCAAAAAGAAGTTTGATAAATAGTG
ATTTTGAAGGTTATAAACTAAACACAGATGGCTTAAAAGCAACATCTAAG
CCACTTTTATCAAAAGTGTACCAAGTAAAGAGAGATCCAAATAAATTCAC
TTTCAACTATGTCAAGCGTCAGCTAATGCACAATCATTTGTTTTTCAATC
AATGGAGCAATGATATCTTTTTTGTTGATGAAAACTTAAACATTGTTCTT
ATACAAGCTGAAAAGGTGAGTAGAAAGAGAATTTTTTTTTTGTCTTTAAC
AATCTTCATATCCTGATATGTTCAAAATCACAATTCAAAACCCAAAACGA
TCTCAAAACCAAAAGTATGAATATCTTGTGGGTTTTATTTTAGGCTGAAT
TTCAGTATTATACTGTTGCCAAACTTGAAAGCCATGGAGAAGATCTGAAC
AGTTTCAGTCCAACAATTTCTTTTCCAACAGAAAATCTCTGCATCACATC
ATCAGGATGCGGTATTCTTCATTTGATGAAGATTCACAAGGATGGTCAAT
CAAAGCAATTCCGCCCATTAGCCACAGGACTAATTCATGATTTCAACACA
CCCATATCCATTCTCAATTCACATCACGACCCAACAACCAATATAATACA
TGTTTTGGTTCTTTCCTTAAAAGACTTTGAAGAGGATGAAAAATCTGTTT
CTTACGCGCTTTTGCATTGGCTTCAAATATCAAACAGTCCAAATGATGAC
GTTGAAAGTACTGTCCGAAATTGGAAAACTTTCAAAGGCCGTAATTTGCC
ACGTGAATGTTGGCTGAGTGAGGATTACACTGAGTTGTTTGTGGCTTCAG
AAACTGAATTTGAGTTGGTCAATGTAGTAACATATGGTAAGAAAAAGTCA
TATTAGATATTCTGTTACCAACTATAAGTACATTAAAACATTTAAACTTC
TTCTCTTTGTGGCATATAAATATATTTCTGCCTCAAGGAAATGAGTGCTG
CTATGAGGGTCTGTAGAGTTTTATCTCTGAGTTTTAACATGATAATTAAA
GACTAGAAGCCACTGAAACCCTCCAAAACAAAAATATCCAATGAAATAAG
TGGGACTAATTTTTGCCTGAACTCTAGATTCTGAAAAAAATACACAAAAT
TCTCAATATGAAGAAAACCTTCATGCAAACAAAAAACCAATCTGAACCCA
TACTTGCTTTATTATATATAACCTTTTATCTCTTCCCACAGAGAGATTGC
ACACTGTAAGTTCACAAGATGAAGCTGAAGATACCATCAAATACTATCAT
TGGCATCAATGTAAAGAAATGCTGACCATTGTTTTCGACCTCACACTAGC
TCAAGATGAGGTGGAATGCCAATTTCTTCACAACTTTTTGTCCATTAAAC
TGAAAACTGGTAAAACTCTGTTGGAAGGGACATTGGAAAAAATGATTTTA
CAGGATGCTTCAAAATGGTATATTCAAGAAGGAAGGTAATTCATAACTCT
CAAAATTCATCTTTGGCTGCTGGTATCAGTCAATTGATCTTCACATAAAT
TGATCTAAATAAATGTCACACACTTTTCATGGTCAATTTCTAATGGATTT
GATATCAGAATAATTCTAATGAAAGGTTTTCCTCTAATTGATATAATTGA
GAACAAAACCCAATGTAATTTCATCAATCTTTTTTTTACAGATTAGAAAT
CGTGTTGGTCAAGAAAACACCGGGTGAGTTCTGGTCATCGGTCATTCCTG
ATGAAAAGCACGGTGTCCATGATATTGAGGGAGAAGAGCTTGAAAGAATG
AATCAAATACATGAGCAGCTGGAACACTTAACTTCTGAAGGCATTCAAAG
GGTACTAAGATATTTAAACTTCTAAGTTTATTTCTTTTTATTATAAGACT
CTTTCTACTCTTGAACCTGCTAATATCCAACAGGAACTTGAATGTAAAAA
TTCAATATTCCTGTATTTTCAATGCAATACGCTATTTCTTTTTTTCTTAA
TACGAATTTACTTGTAATGTGATTTTGTGGTGTAATAATTCTATCTAAAC
CTTCACCAAACTGGTTGCTTTACATGTTCATACAATGCCTTGATAAATTC
ACTACCATCAAACCGGAAGGTTATTAGGGTGCATACCATTTAGCCAAAAA
CCCCAAAAAGTGAAACAGAGGGTTTAGCGAACGCATTGATTCATTTAAAA
GTTTACCTAAACAGACGATCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAATGTAACAGCTTCTGTGTTTAGGTAAACAAACCC
AAACCATTTGCAGTTTAGTGAAACAGTTTCAGTTTTTTGGTTTTGAACAT
TAAAAGGTATGCAACCTTAATTTTTTTTTCTGTAGGAAGAAAAACATGCA
AAAGATTTCAACATTCAACAATTAGAGGAATGCGATGAGAATTTAGAAGA
AGAAATCAAAGTCTATAGTATAAACATCACAAATGGAAAAGTTCAATTAG
AGGTGTGCTTTGTTTACGTTTTTTTTAATAATAATATCAACCCAGCTAAC
AAAAATTGTTATTTGAAGAAATGCAATAATTTTAACTTCTCCTGCCCTTC
TCCTGCCCTCTCCTTGCATCTTGTTAGAAACAATTATAAATGGGAGGTAT
AAATCAGGATTATACTAGAAACAAATCCATAAGTGATGTAAATTTTTTTT
CTTCTAGACATCACTTGGTGGCCAAATGCTGTTTTCTACATCAGTACGTG
AAGATTCAGTTCCCCATTTTTGTTTACGTTATGATGTTGATGGAATCCTA
TGGCAACCTTCTCGTAGCAAAACAACCTTTTGGGTTCACATTGCAACCAT
AGATGCCTTTGGTTATGTGCTAGCTTCTAAACAGGAACATAAGTTTGTTG
GTTGTTCGCCTGATTTCAGTTATGCTGTGATTACAGATTGTAAATCAAAT
GTTTATGTATACGAGTGTTCTCAAGGGCATTCTAAAAAGCGTGCACAGTA
TGTTGCAAGTTTCAGAGACAGTGATGAAATTTTTGGTTGTATTGTTGCAA
AGAATAAATTATGTGTATTAACAGATAACCATGTACATATTTTAGAGCTA
CCTGACCCAAATATGGATACAAATGAGCGTTAGCTGGATTATTCTTCAAT
GGAATTTATTCAAAGACTTTCTTTTGAAGGATATTTTTACTGGTACTGAT
AAATTGATTTGAGCCTCACATTCTAGACCACAATACTACAGAAAACTAGC
TAATTCGTCTTACTTACATTGATTTTTACAAAAGTAAATACTTTAACAGC
CCTCAAATTTCAGGTCGTCATTCGGCAATACCGACCAAAGAGTGTGTATG
ATCGGCAGTTCATTGCCAACCATAATCATCAATAATCTCAGCAGCAGACC
ATTAGTGATCTTTTTGGTCAGCAAATCCGACCTTTGAACCAAACATTGTA
GCTTTCAAATAGAAAAAAAACGTTGCCGTAGCCTTTAAACAACTTTGCTG
ACCTATAATTGAGCTCAGATCAGCATTGCCGACCTAAAAACGCCTAAGAT
TGGCCTAGATTGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055250-exon-scaffold_251-1575043694:853203..853483 | TCONS_00055250-exon-scaffold_251-1575043694:853203..853483 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1575043694:851498..851990 | TCONS_00055250-exon-scaffold_251-1575043694:851498..851990 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1575043694:850899..851142 | TCONS_00055250-exon-scaffold_251-1575043694:850899..851142 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1575043694:850533..850692 | TCONS_00055250-exon-scaffold_251-1575043694:850533..850692 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1575043694:849582..849698 | TCONS_00055250-exon-scaffold_251-1575043694:849582..849698 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1575043694:848517..849376 | TCONS_00055250-exon-scaffold_251-1575043694:848517..849376 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:853203..853483 | TCONS_00055250-exon-scaffold_251-1510915933:853203..853483 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:851498..851990 | TCONS_00055250-exon-scaffold_251-1510915933:851498..851990 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:850899..851142 | TCONS_00055250-exon-scaffold_251-1510915933:850899..851142 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:850533..850692 | TCONS_00055250-exon-scaffold_251-1510915933:850533..850692 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:849582..849698 | TCONS_00055250-exon-scaffold_251-1510915933:849582..849698 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1510915933:848517..849376 | TCONS_00055250-exon-scaffold_251-1510915933:848517..849376 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:853203..853483 | TCONS_00055250-exon-scaffold_251-1491911889:853203..853483 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:851498..851990 | TCONS_00055250-exon-scaffold_251-1491911889:851498..851990 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:850899..851142 | TCONS_00055250-exon-scaffold_251-1491911889:850899..851142 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:850533..850692 | TCONS_00055250-exon-scaffold_251-1491911889:850533..850692 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:849582..849698 | TCONS_00055250-exon-scaffold_251-1491911889:849582..849698 | Clytia hemisphaerica | exon |
TCONS_00055250-exon-scaffold_251-1491911889:848517..849376 | TCONS_00055250-exon-scaffold_251-1491911889:848517..849376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_251 | supercontig | scaffold_251:848517..853483 - |
Blast
BLAST of TCONS_00055250 vs. Swiss-Prot (Human)
Match: NUDC1 (NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 1.099e-45 Identity = 167/601 (27.79%), Postives = 276/601 (45.92%), Query Frame = 3
Query: 33 ALRPKRSLINSDFEGYKLNTDGLKATSKPLLSKVYQVKRDPNKFTFNYVKRQLMHNHLFFNQWSND-IFFVDE-----NLNIVLIQAEKAEFQYYTVAKLESHGEDLNSFSPTISFPTENLCITSSGCGILHLMKIHKDGQSKQFRPLATGLIHDFNTP------ISILNSHHDPTTNIIHVLVLSLKDFEEDEKSVS-YALLHWLQISNSPNDDVESTVRNWKTFKGRNLPRECWLSEDYTELFVASETEFELVNVVTYERLHTVSSQDEAEDTI----------KYYHWHQCKEMLTIVFDLT--LAQDEVECQFLHNFLSIXXXXXXXXXXXXXXXMILQDASKWYIQEGR-LEIVLVKKTPGEFWSSVIPDEKHGVHDIEGEELERMNQ---IHEQLEHLTSEGIQ-REEKHAKDFNIQQLXXXXXXXXXXIKVYSINITNGKVQLETSLGG-QMLFSTSVREDSVPHFCLRYDVDGILWQPSRSKTT-FWVHIATIDAFGYVLASKQEHKFVGCSPDFSYAVITDCKSNVYVYECSQGHS-------------KKRAQYVASFRDSDEIFGCIVAKNKLCVLTDNHVHILELPDPN 1700
+LR KR L++ FEGYKL+ + L L + V +VK +++T ++ M+N+L + W D ++++D NL ++L A + + + + + N +I F + S G G L+++ + G S + + P IS+LN+ + I L+L ++ E D K Y L W+ IS D+ + + +G+++P + A E + + +V+Y+ L V + + E+ + Y+W Q ++ LT+ L +++++ QFL + ++I LK + L I ++S W I+E LEI L+KK G W ++ + D +GE + Q I E+L HLTSE + +K N Q+LEECD EE + + K +LG Q LFS V +P FCLR+DVD +LWQP SK W HIAT +A GYV ASK++ KF C+P++SYA + +C V++Y S + Q VAS +D I G +L VLT ++ ++++ N
Sbjct: 8 SLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACD--NRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEK-WEIMFNEELGDPFIIIHSISLLNAEE----HSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPH-----------YAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSS-IDHESSTWIIKESNSLEISLIKKNEGLTWPELV------IGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN 583
The following BLAST results are available for this feature:
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