TCONS_00055184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055184
Unique NameTCONS_00055184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055184 ID=TCONS_00055184|Name=TCONS_00055184|organism=Clytia hemisphaerica|type=transcript|length=329bp
AGGTGAGTTAGACCGAGTTGATCGAATTGAGTATGGGTCTTGTCCAGTGT
TTGTTTGTTGTAAGTGACGGTGAGGTGAGTTAGACCGAGTTGATCGACTC
GAATGTGGATTCATACCGAGAGCTGCttttaatttttggttttgatgaAG
TAGATCTTCGTAATCCCTCTTCCATATACCGTTGACTTGCACAAGCTGAT
TATAAGAGAAAGGTATATGTATCTTTATTATGAAAATTGATCGTTACATT
TCAAGAGCCATTTAGCGTAATTTGAGATATTCAAAAATCCGATTATATGC
CGTTCCTATAGTAACGCTTTGCCTAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_251:598318..598790+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055184 ID=TCONS_00055184|Name=TCONS_00055184|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_251:598318..598790+ (Clytia hemisphaerica)
AGGTGAGTTAGACCGAGTTGATCGAATTGAGTATGGGTCTTGTCCAGTGT
TTGTTTGTTGTAAGTGACGGTGAGGTGAGTTAGACCGAGTTGATCGAATT
GAGTATGGGTCTTGTCCAGTGTTTGTTTGTTGTAAGTGACGGTGAGGTGA
GTTAGACCGAGTTGATCGAATTGAGTATGGGTCTTGTCCAGTGTTTGTTT
GTTGTAAGTGACGGTTAGGTGAGTTAGACCGAGTTGATCGACTCGAATGT
GGATTCATACCGAGAGCTGCttttaatttttggttttgatgaAGTAGATC
TTCGTAATCCCTCTTCCATATACCGTTGACTTGCACAAGCTGATTATAAG
AGAAAGGTATATGTATCTTTATTATGAAAATTGATCGTTACATTTCAAGA
GCCATTTAGCGTAATTTGAGATATTCAAAAATCCGATTATATGCCGTTCC
TATAGTAACGCTTTGCCTAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034757XLOC_034757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055184-exon-scaffold_251-1491911889:598318..598391TCONS_00055184-exon-scaffold_251-1491911889:598318..598391Clytia hemisphaericaexon
TCONS_00055184-exon-scaffold_251-1510915933:598318..598391TCONS_00055184-exon-scaffold_251-1510915933:598318..598391Clytia hemisphaericaexon
TCONS_00055184-exon-scaffold_251-1575043694:598318..598391TCONS_00055184-exon-scaffold_251-1575043694:598318..598391Clytia hemisphaericaexon
TCONS_00055184-exon-scaffold_251-1491911889:598536..598790TCONS_00055184-exon-scaffold_251-1491911889:598536..598790Clytia hemisphaericaexon
TCONS_00055184-exon-scaffold_251-1510915933:598536..598790TCONS_00055184-exon-scaffold_251-1510915933:598536..598790Clytia hemisphaericaexon
TCONS_00055184-exon-scaffold_251-1575043694:598536..598790TCONS_00055184-exon-scaffold_251-1575043694:598536..598790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:598318..598790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67498	0	0	0.838244	0	0	0	0	0	3.20255	0	5.25581	2.96868	11.8161	24.9904	8.3004	0.053715	0	0	70.5957	0	0	3.61233	0	3.03236	0	0	2.80289	1.6411	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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