TCONS_00055183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055183
Unique NameTCONS_00055183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055183 ID=TCONS_00055183|Name=TCONS_00055183|organism=Clytia hemisphaerica|type=transcript|length=277bp
GTTTCATGCAAGTGACGGTGAGGTGAGTTAGACCGAGTTGATCGACTCGA
ATGTGGATTCATACCGAGAGCTGCttttaatttttggttttgatgaAGTA
GATCTTCGTAATCCCTCTTCCATATACCGTTGACTTGCACAAGCTGATTA
TAAGAGAAAGGTATATGTATCTTTATTATGAAAATTGATCGTTACATTTC
AAGAGCCATTTAGCGTAATTTGAGATATTCAAAAATCCGATTATATGCCG
TTCCTATAGTAACGCTTTGCCTAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_251:598298..598790+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055183 ID=TCONS_00055183|Name=TCONS_00055183|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_251:598298..598790+ (Clytia hemisphaerica)
GTTTCATGCAAGTGACGGTGAGGTGAGTTAGACCGAGTTGATCGAATTGA
GTATGGGTCTTGTCCAGTGTTTGTTTGTTGTAAGTGACGGTGAGGTGAGT
TAGACCGAGTTGATCGAATTGAGTATGGGTCTTGTCCAGTGTTTGTTTGT
TGTAAGTGACGGTGAGGTGAGTTAGACCGAGTTGATCGAATTGAGTATGG
GTCTTGTCCAGTGTTTGTTTGTTGTAAGTGACGGTTAGGTGAGTTAGACC
GAGTTGATCGACTCGAATGTGGATTCATACCGAGAGCTGCttttaatttt
tggttttgatgaAGTAGATCTTCGTAATCCCTCTTCCATATACCGTTGAC
TTGCACAAGCTGATTATAAGAGAAAGGTATATGTATCTTTATTATGAAAA
TTGATCGTTACATTTCAAGAGCCATTTAGCGTAATTTGAGATATTCAAAA
ATCCGATTATATGCCGTTCCTATAGTAACGCTTTGCCTAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034757XLOC_034757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055183-exon-scaffold_251-1491911889:598298..598319TCONS_00055183-exon-scaffold_251-1491911889:598298..598319Clytia hemisphaericaexon
TCONS_00055183-exon-scaffold_251-1510915933:598298..598319TCONS_00055183-exon-scaffold_251-1510915933:598298..598319Clytia hemisphaericaexon
TCONS_00055183-exon-scaffold_251-1575043694:598298..598319TCONS_00055183-exon-scaffold_251-1575043694:598298..598319Clytia hemisphaericaexon
TCONS_00055183-exon-scaffold_251-1491911889:598536..598790TCONS_00055183-exon-scaffold_251-1491911889:598536..598790Clytia hemisphaericaexon
TCONS_00055183-exon-scaffold_251-1510915933:598536..598790TCONS_00055183-exon-scaffold_251-1510915933:598536..598790Clytia hemisphaericaexon
TCONS_00055183-exon-scaffold_251-1575043694:598536..598790TCONS_00055183-exon-scaffold_251-1575043694:598536..598790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:598298..598790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47016	5.69932	5.30741	2.30175	13.1725	15.0911	50.2159	44.7334	94.364	69.2824	95.142	83.1412	248.602	194.126	167.065	117.501	174.124	184.926	499.071	378.385	77.1109	73.7038	55.112	61.882	280.355	274.788	71.1921	104.086	33.0411	31.4091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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