TCONS_00055086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055086
Unique NameTCONS_00055086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055086 ID=TCONS_00055086|Name=TCONS_00055086|organism=Clytia hemisphaerica|type=transcript|length=318bp
CCTGAGTGAAGAGATTagccaaatttgctcaaaatcaTTTgcattcttaa
aggttttgtttttaaataagagcgaTATCGTttacttactcatcaatttt
aattcacaagcttttccacattggattgacacggatgtggagcaagattg
gtcagaaagaggaaaagaaaaaccttttttTAGCTTATATCAGCATAACT
ATTGCTAGGCAGACACTGTCCTGATATGAAATTATGTGTCTGATATGAAA
CGAGAACACTTATTAATATTATGTAAAAATAAAACCTTTAAAAAACTTTC
GTAATTGCAGTAATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_25:53632..53949

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055086 ID=TCONS_00055086|Name=TCONS_00055086|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_25:53632..53949 (Clytia hemisphaerica)
AAAAATTACTGCAATTACGAAAGTTTTTTAAAGGTTTTATTTTTACATAA
TATTAATAAGTGTTCTCGTTTCATATCAGACACATAATTTCATATCAGGA
CAGTGTCTGCCTAGCAATAGTTATGCTGATATAAGCTAaaaaaaggtttt
tcttttcctctttctgaccaatcttgctccacatccgtgtcaatccaatg
tggaaaagcttgtgaattaaaattgatgagtaagtaaACGATAtcgctct
tatttaaaaacaaaacctttaagaatgcAAAtgattttgagcaaatttgg
ctAATCTCTTCACTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034706XLOC_034706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055086-exon-scaffold_25-1491911889:53632..53949TCONS_00055086-exon-scaffold_25-1491911889:53632..53949Clytia hemisphaericaexon
TCONS_00055086-exon-scaffold_25-1510915933:53632..53949TCONS_00055086-exon-scaffold_25-1510915933:53632..53949Clytia hemisphaericaexon
TCONS_00055086-exon-scaffold_25-1575043694:53632..53949TCONS_00055086-exon-scaffold_25-1575043694:53632..53949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:53632..53949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42754	0	2.60585	1.85395	0	0.703157	0	0.39298	0	0	3.01725	0.456238	0.656062	0.261481	0.187298	0.20252	0	0	0.694563	0.389451	0.367472	1.84168	0	0	0	1.25148	0.650969	0.952462	0.722409	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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