TCONS_00054882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054882
Unique NameTCONS_00054882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054882 ID=TCONS_00054882|Name=TCONS_00054882|organism=Clytia hemisphaerica|type=transcript|length=436bp
AGTAGTTAATGCCATTAATGAGaataaaattggtcaaaattaaaaacaac
cTGCAAAATACCTGTAAAATAAACAAAGCTTCTTGTTTGGAAACTCTAAA
AATAACCAAACGCAGTCATTATAAAAATTAAACATGAACAACCTGAATTT
TCGAATTCNTCCTTCCTCTAGAAGTGACCCTGAACAGAAAAATCAGCCAA
CCAGCACAGTAGGAAATTCAAGTAGACATTCTTCAACACCTGTTTCACCT
ATTCGTAGCCCAGTAGTCAACTATCCTTCGTCTGGCAGAACAGAAAACTT
CTCTTCACCTCATAACAATGGATCACCGAATCAACAAATTTATCAACGCG
AAAACGAGGCTGACGAAATAACCATAGTGATGCCATCAACAGAGAGCCCG
TCGCATTGGTTACAATCTACAAATCAACATGGTGGA
Run BLAST on NCBI

protein sequence of TCONS_00054882-protein

>TCONS_00054882-protein ID=TCONS_00054882-protein|Name=TCONS_00054882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MNNLNFRIXPSSRSDPEQKNQPTSTVGNSSRHSSTPVSPIRSPVVNYPSS
GRTENFSSPHNNGSPNQQIYQRENEADEITIVMPSTESPSHWLQSTNQHG
G
Run BLAST on NCBI

transcript from alignment at scaffold_245:751620..752055

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054882 ID=TCONS_00054882|Name=TCONS_00054882|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_245:751620..752055 (Clytia hemisphaerica)
TCCACCATGTTGATTTGTAGATTGTAACCAATGCGACGGGCTCTCTGTTG
ATGGCATCACTATGGTTATTTCGTCAGCCTCGTTTTCGCGTTGATAAATT
TGTTGATTCGGTGATCCATTGTTATGAGGTGAAGAGAAGTTTTCTGTTCT
GCCAGACGAAGGATAGTTGACTACTGGGCTACGAATAGGTGAAACAGGTG
TTGAAGAATGTCTACTTGAATTTCCTACTGTGCTGGTTGGCTGATTTTTC
TGTTCAGGGTCACTTCTAGAGGAAGGANGAATTCGAAAATTCAGGTTGTT
CATGTTTAATTTTTATAATGACTGCGTTTGGTTATTTTTAGAGTTTCCAA
ACAAGAAGCTTTGTTTATTTTACAGGTATTTTGCAggttgtttttaattt
tgaccaattttattCTCATTAATGGCATTAACTACT

Coding sequence (CDS) from alignment at scaffold_245:751620..752055

>TCONS_00054882 ID=TCONS_00054882|Name=TCONS_00054882|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_245:751620..752055 (Clytia hemisphaerica)
TCCACCATGTTGATTTGTAGATTGTAACCAATGCGACGGGCTCTCTGTTG
ATGGCATCACTATGGTTATTTCGTCAGCCTCGTTTTCGCGTTGATAAATT
TGTTGATTCGGTGATCCATTGTTATGAGGTGAAGAGAAGTTTTCTGTTCT
GCCAGACGAAGGATAGTTGACTACTGGGCTACGAATAGGTGAAACAGGTG
TTGAAGAATGTCTACTTGAATTTCCTACTGTGCTGGTTGGCTGATTTTTC
TGTTCAGGGTCACTTCTAGAGGAAGGANGAATTCGAAAATTCAGGTTGTT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034580XLOC_034580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054882-exon-scaffold_245-1491911889:751620..752055TCONS_00054882-exon-scaffold_245-1491911889:751620..752055Clytia hemisphaericaexon
TCONS_00054882-exon-scaffold_245-1510915933:751620..752055TCONS_00054882-exon-scaffold_245-1510915933:751620..752055Clytia hemisphaericaexon
TCONS_00054882-exon-scaffold_245-1575043694:751620..752055TCONS_00054882-exon-scaffold_245-1575043694:751620..752055Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054882-proteinTCONS_00054882-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:751620..752055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108859	0	0.144926	0	0	0	0.40187	0.188113	0	0	0	0.312264	3.27107	1.58337	0	0.480871	0	1.39572	6.76032	5.00978	3.6259	1.52272	2.35253	3.03059	4.17428	2.47159	0.354013	0.25624	0.689537	1.43482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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