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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054875 ID=TCONS_00054875|Name=TCONS_00054875|organism=Clytia hemisphaerica|type=transcript|length=1325bp
GGATTGCTACGGAaaggaaataaaaaagtattcttTTCCGTTCAAATTTG
CATTTGGTTATTTTGCCTTTATCGTAGGAACAAAATTCCTAAGAAACACA
AAACATTATTATTGGATCAAGAATTCAAAATAGCTGTGAATGTGAAGGAA
TATTAGGGGagttttgttacatttttacaaaaaaagagaAAGGATTGAGC
AAGACGATGCCAGCATTTCAGAATCAGAACAGTACAACAGATTCACATGC
TTCTTCAACAACCTTAATTTTAACTCTGGCCATAGATTCATGTGGAATCT
TGTTATCCATAATGGCGATAGTAGCCATGATGACTGTCAAAAATCTTCCG
AACACATTTTCTGGCACATTACTCAGTCATTCCGTAGCTAACTTTATTGG
TGGATTATTATTCTTATGGACAACCATTTCAGAGATGCTATATATCGAAA
TTGATGGAATGAACCCGACTACTATTATCTCAATGGCCATCTCAGTGGTA
CTAAGTTTATCACATCTTCTGTGTTTGGTACTTGCTGAATACATTCACGT
CAGTGGACAGTTCAAGTATGTTACCAAATCATTTCGACCGTTGTTAGCCA
TTGTATGGTTCCTAGCAATATGTTTGAGCAGCGTGTTATTCTTTCTTGAC
AAAACAACAACAGAATTTATTTGTCTTATCGGTATCATTGTTTGTTGGAT
AGGGCTTATTGCTTTCTATACTTCTGTCATGAAGATGTATCGCAACCATC
GACACGAGATCGCAAGGTACAGCAAAACACACGTCACTAACCCAGTCTCA
CATCGAGATATCTTTTTCCCAAGAGTTATTTTAGCGGCATACTTTTTCTG
CTCGTTACCTTGGGCTTTTAAAGAAGCTCACTACGCTAAGAACAGCAGCC
TGACACCTTCGGATGATACAAGTTATTATATGATTGTGGTTTACTCTTTA
AACTTTCATGTTGTTTCGATCATCTGTTTATACCTGAAATGCCGAAATGC
TGAACAGAACATCTGGCATACTCGACATTACACCACAAAATACAGATATT
CGGAAAGATCCATTGAGTTAGGGGAATCGAAGAAGGATAGTCTCACTTCT
AGCGAGTCTTTTGAACTCAAAAATAAAGATTCTACTCAACCTGGCACTAT
TTCCTATCAATATTATAACACAGCTTTGGAAATTGACgcataatttttga
gaaaaaattttaacgCAGAgctatttttgagaaattgaaagaaaaatctt
tgataTCGTGCATGGCCAACGAAAACTGACATTTTCTGTAATttcctttt
ttggtaatttcgAATATTGATGGCG Run BLAST on NCBI protein sequence of TCONS_00054875-protein >TCONS_00054875-protein ID=TCONS_00054875-protein|Name=TCONS_00054875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MPAFQNQNSTTDSHASSTTLILTLAIDSCGILLSIMAIVAMMTVKNLPNT
FSGTLLSHSVANFIGGLLFLWTTISEMLYIEIDGMNPTTIISMAISVVLS
LSHLLCLVLAEYIHVSGQFKYVTKSFRPLLAIVWFLAICLSSVLFFLDKT
TTEFICLIGIIVCWIGLIAFYTSVMKMYRNHRHEIARYSKTHVTNPVSHR
DIFFPRVILAAYFFCSLPWAFKEAHYAKNSSLTPSDDTSYYMIVVYSLNF
HVVSIICLYLKCRNAEQNIWHTRHYTTKYRYSERSIELGESKKDSLTSSE
SFELKNKDSTQPGTISYQYYNTALEIDA Run BLAST on NCBI transcript from alignment at scaffold_245:699003..700327 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054875 ID=TCONS_00054875|Name=TCONS_00054875|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at scaffold_245:699003..700327 (Clytia hemisphaerica)
CGCCATCAATATTcgaaattaccaaaaaaggaaATTACAGAAAATGTCAG
TTTTCGTTGGCCATGCACGAtatcaaagatttttctttcaatttctcaaa
aatagcTCTGcgttaaaattttttctcaaaaattatgcGTCAATTTCCAA
AGCTGTGTTATAATATTGATAGGAAATAGTGCCAGGTTGAGTAGAATCTT
TATTTTTGAGTTCAAAAGACTCGCTAGAAGTGAGACTATCCTTCTTCGAT
TCCCCTAACTCAATGGATCTTTCCGAATATCTGTATTTTGTGGTGTAATG
TCGAGTATGCCAGATGTTCTGTTCAGCATTTCGGCATTTCAGGTATAAAC
AGATGATCGAAACAACATGAAAGTTTAAAGAGTAAACCACAATCATATAA
TAACTTGTATCATCCGAAGGTGTCAGGCTGCTGTTCTTAGCGTAGTGAGC
TTCTTTAAAAGCCCAAGGTAACGAGCAGAAAAAGTATGCCGCTAAAATAA
CTCTTGGGAAAAAGATATCTCGATGTGAGACTGGGTTAGTGACGTGTGTT
TTGCTGTACCTTGCGATCTCGTGTCGATGGTTGCGATACATCTTCATGAC
AGAAGTATAGAAAGCAATAAGCCCTATCCAACAAACAATGATACCGATAA
GACAAATAAATTCTGTTGTTGTTTTGTCAAGAAAGAATAACACGCTGCTC
AAACATATTGCTAGGAACCATACAATGGCTAACAACGGTCGAAATGATTT
GGTAACATACTTGAACTGTCCACTGACGTGAATGTATTCAGCAAGTACCA
AACACAGAAGATGTGATAAACTTAGTACCACTGAGATGGCCATTGAGATA
ATAGTAGTCGGGTTCATTCCATCAATTTCGATATATAGCATCTCTGAAAT
GGTTGTCCATAAGAATAATAATCCACCAATAAAGTTAGCTACGGAATGAC
TGAGTAATGTGCCAGAAAATGTGTTCGGAAGATTTTTGACAGTCATCATG
GCTACTATCGCCATTATGGATAACAAGATTCCACATGAATCTATGGCCAG
AGTTAAAATTAAGGTTGTTGAAGAAGCATGTGAATCTGTTGTACTGTTCT
GATTCTGAAATGCTGGCATCGTCTTGCTCAATCCTTtctctttttttgta
aaaatgtaacaaaactCCCCTAATATTCCTTCACATTCACAGCTATTTTG
AATTCTTGATCCAATAATAATGTTTTGTGTTTCTTAGGAATTTTGTTCCT
ACGATAAAGGCAAAATAACCAAATGCAAATTTGAACGGAAaagaatactt
ttttatttccttTCCGTAGCAATCC Coding sequence (CDS) from alignment at scaffold_245:699003..700327 >TCONS_00054875 ID=TCONS_00054875|Name=TCONS_00054875|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_245:699003..700327 (Clytia hemisphaerica)
ttatgcGTCAATTTCCAAAGCTGTGTTATAATATTGATAGGAAATAGTGC
CAGGTTGAGTAGAATCTTTATTTTTGAGTTCAAAAGACTCGCTAGAAGTG
AGACTATCCTTCTTCGATTCCCCTAACTCAATGGATCTTTCCGAATATCT
GTATTTTGTGGTGTAATGTCGAGTATGCCAGATGTTCTGTTCAGCATTTC
GGCATTTCAGGTATAAACAGATGATCGAAACAACATGAAAGTTTAAAGAG
TAAACCACAATCATATAATAACTTGTATCATCCGAAGGTGTCAGGCTGCT
GTTCTTAGCGTAGTGAGCTTCTTTAAAAGCCCAAGGTAACGAGCAGAAAA
AGTATGCCGCTAAAATAACTCTTGGGAAAAAGATATCTCGATGTGAGACT
GGGTTAGTGACGTGTGTTTTGCTGTACCTTGCGATCTCGTGTCGATGGTT
GCGATACATCTTCATGACAGAAGTATAGAAAGCAATAAGCCCTATCCAAC
AAACAATGATACCGATAAGACAAATAAATTCTGTTGTTGTTTTGTCAAGA
AAGAATAACACGCTGCTCAAACATATTGCTAGGAACCATACAATGGCTAA
CAACGGTCGAAATGATTTGGTAACATACTTGAACTGTCCACTGACGTGAA
TGTATTCAGCAAGTACCAAACACAGAAGATGTGATAAACTTAGTACCACT
GAGATGGCCATTGAGATAATAGTAGTCGGGTTCATTCCATCAATTTCGAT
ATATAGCATCTCTGAAATGGTTGTCCATAAGAATAATAATCCACCAATAA
AGTTAGCTACGGAATGACTGAGTAATGTGCCAGAAAATGTGTTCGGAAGA
TTTTTGACAGTCATCATGGCTACTATCGCCATTATGGATAACAAGATTCC
ACATGAATCTATGGCCAGAGTTAAAATTAAGGTTGTTGAAGAAGCATGTG
AATCTGTTGTACTGTTCTGATTCTGAAATGCTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054875-exon-scaffold_245-1491911889:699003..700327 | TCONS_00054875-exon-scaffold_245-1491911889:699003..700327 | Clytia hemisphaerica | exon |
| TCONS_00054875-exon-scaffold_245-1510915933:699003..700327 | TCONS_00054875-exon-scaffold_245-1510915933:699003..700327 | Clytia hemisphaerica | exon |
| TCONS_00054875-exon-scaffold_245-1575043694:699003..700327 | TCONS_00054875-exon-scaffold_245-1575043694:699003..700327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:699003..700327 . |
Blast
The following BLAST results are available for this feature:
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