|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054797 ID=TCONS_00054797|Name=TCONS_00054797|organism=Clytia hemisphaerica|type=transcript|length=1139bp
cgaatgttttgatgttaatttcatcaaaatagagGAAAAGAAAGATTGGT
AAAAGATtgtaagaaaaacaaaacaaagaagaagagACACAAATGAGGAG
AGAGAAAAGATTgctgatatttttcaagttgacgataaaccagttatcac
acttttactCGTACACTATAggatatatttttctcgttcagagTTTTCTA
TCCCATATGGTACTTAGTAccgtgcgataactattactaaAAATTCATTT
TACATAATATCAAACTATAACactgaaattttccaaaaattactCATGTC
GAATCAATTTTACCATATAAAAGGAAACAACTTTGCAGTTCTATTCTTAT
AAATTTGATATTCAACTAAGCTACCCCACCGTTGATCCGCTTGTCTTTCC
AAATGTGGTAGACCAGTTTTATTAGTAAGCAGATAAGTTACTAATAAAGG
AGATGCCAGTGAAAGGTACTCCCATCCCTCCATAGTATTTGAAGCTGGTA
AAAACAAGCCAAACCAAATAATGATTTCACCTAAATAATTAGGATGCCTA
GAAACACTCCATAACCCAGTCGTGATAAATTTTCCACGGTTACAAGGAGT
ATCTCGGAAAACACATTTTTGGTAATCAGCAATAGCTTCTGTGAAAAACC
CAATAAGCCAAAGAGAGTATCCAATATAGTCAAATAAATTCATAGGTTTA
TCTTCCAATTTCAAGTTAACAATCAGAGTTGGCAGTAAAGTCAAATAGAT
ATTGAGACCTTGAATGGTCCAATACTTAAAACTaacaacaaaatcatttt
tgaattttaaaaatctctTTACTCGGCTGCTTCTTGCATATAAAAAAGTA
CCCAAGCGAATGGCCCATACAGACacacaaaaattttgaaaaatttgtct
TTTAAAAAAGCGTAGATCAGTGCCTCTTTTTGCCCATAGCAAAGTAACCC
ATGATATATAGGTGACGGTGGATGCACCAGTTAGATCAAAATATTTCTCA
GTTCGGTAATAGAAAGATATTGGCCATACTACCCATTGTATAGCAAGGTC
CAAACATAATGCTTTCAATAACAAATGCTGATCAAAAAATCCATGGACTA
TAGATACTGCATTTCCCATTACTTTTTCATTTCCctata Run BLAST on NCBI transcript from alignment at scaffold_245:127203..128405- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054797 ID=TCONS_00054797|Name=TCONS_00054797|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_245:127203..128405- (Clytia hemisphaerica)
CGAATGTTTTGATGTTAATTTCATCAAAATAGAGGAAAAGAAAGATTGGT
AAAAGATTGTAAGAAAAACAAAACAAAGAAGAAGAGACACAAATGAGGAG
AGAGAAAAGATTGCTGATATTTTTCAAGTTGACGATAAACCAGTTATCAC
ACTTTTACTCGTACACTATAGGATATATTTTTCTCGTTCAGAGTTTTCTA
TCCCATATGGTACTTAGTACCGTGCGATAACTATTACTAAAAATTCATTT
TACATAATATCAAACTATAACACTGAAATTTTCCAAAAATTACTCATGTC
GAATCAATTTTACCATATAAAAGGAAACAACTTTGCAGTTCTATTCTTAT
AAATTTGATATTCAACTAAGCTACCCCACCGTTGATCCGCTTGTCTTTCC
AAATGTGGTAGACCAGTTTTATTAGTAAGCAGGTAAGTTACTAATAANAT
CCGCTTGTCTTTCCAAATGTGGTAGACCAGTTTTATTAGTAAGCAGATAA
GTTACTAATAAAGGAGATGCCAGTGAAAGGTACTCCCATCCCTCCATAGT
ATTTGAAGCTGGTAAAAACAAGCCAAACCAAATAATGATTTCACCTAAAT
AATTAGGATGCCTAGAAACACTCCATAACCCAGTCGTGATAAATTTTCCA
CGGTTACAAGGAGTATCTCGGAAAACACATTTTTGGTAATCAGCAATAGC
TTCTGTGAAAAACCCAATAAGCCAAAGAGAGTATCCAATATAGTCAAATA
AATTCATAGGTTTATCTTCCAATTTCAAGTTAACAATCAGAGTTGGCAGT
AAAGTCAAATAGATATTGAGACCTTGAATGGTCCAATACTTAAAACTAAC
AACAAAATCATTTTTGAATTTTAAAAATCTCTTTACTCGGCTGCTTCTTG
CATATAAAAAAGTACCCAAGCGAATGGCCCATACAGACACACAAAAATTT
TGAAAAATTTGTCTTTTAAAAAAGCGTAGATCAGTGCCTCTTTTTGCCCA
TAGCAAAGTAACCCATGATATATAGGTGACGGTGGATGCACCAGTTAGAT
CAAAATATTTCTCAGTTCGGTAATAGAAAGATATTGGCCATACTACCCAT
TGTATAGCAAGGTCCAAACATAATGCTTTCAATAACAAATGCTGATCAAA
AAATCCATGGACTATAGATACTGCATTTCCCATTACTTTTTCATTTCCCT
ATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054797-exon-scaffold_245-1575043694:127974..128405 | TCONS_00054797-exon-scaffold_245-1575043694:127974..128405 | Clytia hemisphaerica | exon |
| TCONS_00054797-exon-scaffold_245-1575043694:127203..127909 | TCONS_00054797-exon-scaffold_245-1575043694:127203..127909 | Clytia hemisphaerica | exon |
| TCONS_00054797-exon-scaffold_245-1510915933:127974..128405 | TCONS_00054797-exon-scaffold_245-1510915933:127974..128405 | Clytia hemisphaerica | exon |
| TCONS_00054797-exon-scaffold_245-1510915933:127203..127909 | TCONS_00054797-exon-scaffold_245-1510915933:127203..127909 | Clytia hemisphaerica | exon |
| TCONS_00054797-exon-scaffold_245-1491911889:127974..128405 | TCONS_00054797-exon-scaffold_245-1491911889:127974..128405 | Clytia hemisphaerica | exon |
| TCONS_00054797-exon-scaffold_245-1491911889:127203..127909 | TCONS_00054797-exon-scaffold_245-1491911889:127203..127909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:127203..128405 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
|
