TCONS_00054626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054626
Unique NameTCONS_00054626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054626 ID=TCONS_00054626|Name=TCONS_00054626|organism=Clytia hemisphaerica|type=transcript|length=2014bp
GTATGTTAATCAAGatTTATTATCCAGAGCACGGAATTGTTCACAGAGGT
ATGGCGTAAGATTTAAATTGTTATTCTCCTTGCTACATAcaataacaaaa
caaaatgAGAGAGTGCGTATCAATCCATATTGGACAAGCCGGTTGTCAAA
TCGGTAACGCATGTTGGGAACTATACTGTCTGGAGCACGGTATTCTTCCC
GATGGTACTCCTAACCCTAACCATGAAAAGGAACAAGGAGACTCTGCTGT
TTCTTTTTACTCCGAAATGGAAGAAACCGGCCGCCAAGTTCCGCGAGCTG
TTTATGCTGATTTAGAACCCACTGTTTTAGacGAAGTGCGAACCGGTGCT
TACCGTGAGCTTTTTCATCCGGATCAACTAATTAATGGAAAAGAAgatgc
agcaaacaactttgcACGTGGTCACTACACGATTGGTCGAACCCTTATTG
ACGAGATTATCGACAAAGTTCGAAAACTTACGGACAACTGTTGTGGTCTT
CAAGGTTTCTTGATCTTCCATTCTTTCGGCGGTGGTACCGGATCTGGATT
GACCGCACGTCTTATGGAACGTCTCTCTGTCGACTACGGCAAAAAATCTA
AACTCCAATTTTCCGTATACCCAGCTCCACAAGTCTCGACAGCTGTTGTT
GAACCTTACAACTCAGTTCTCACCACACATTTTACTTTCGATCATTCCGA
TTGTGCTTTCATGGTTGATAATGAAGCTATCTATGATATCTgtcgaaaaa
atttgaatattgaaCGACCTAACTATACCAATCTGAATCGATTAATCTCT
CAAGTTGTCTCATCTATCACAGCTTCTCTACGGTTCGAAGGTGAATTGAA
TGTTGACTTGAACGAATTCCAAACTAACTTGGTGCCGTATCCCCGTATCC
ATTTCCCATTGTCAAGTTTTGCTCCAATCTTGGCCCCTGATAAAGCACAA
AAATCGTCGTTACACGTCGCTGAGATCactcaaaatgtttttaaacaaGA
AAATCAAATGGTAAAATGTGATCCCAAACAAGGAAAATACATGTCATGTT
GTTTACTTTACCGTGGAGATGTTGGCCCTCAGGATGTCAACAAGGCTATT
GCAGGAGTCAAAGCCAAATCAGATATTCAATTTGTTGATTGGTGTCCAAC
TGGATTTAAAGTCGGTATTAACAACCAGACGTTACACGCACAAGAAGGTA
GCGACATGGCACCTGTTAAACGTGCTCTCTGTATGTTGAGCAACACCACT
GCAATGGCTGCATTGTGGGCACGTTTGGATcataaatttgatttgatgTA
CCGAAAGAGAGCTTTTGTTCATTGGTATGTCGGTGAAGGTATGGAAGAAG
GTGAATTCAATGAAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTGATTAT
GAAGAAGTGGGCGGTGATTCGCCAAACTCTGATGAAGGAGAGATGGACGA
TGAATATTAAACCCCCTGACCGCCCTatttagaaacattttttttccacg
atcaatcaataaatcactTTGAACCATAACCTTTTGACGTTGCATTTCTT
TTATGGTATAAGTGAAGTTTTTTGATGTGAcacctttttttagaaaaaat
tctgtATAAGTTAGAACCCACCTTCCCTTTCAACACAATAATTTTTCATC
TCGAATATACTTGACCACCGAGCCACATCAGTCCTAATGAACCACAGGGC
TATTCCGCACTTTAATCCaagtataaaatttataaacagaattttataag
aaaaatttttgatacAACTATTTATTATAGCCATATACATGGATATTTTA
TTGTCGTGTATAATTATTATTGTCTTTTCCTCTCACTTTTAAAGTATTTG
TCTGTAAGAAAAACCATTTTAaataactttaaatttttttttaaattatg
tttgTCATTATAGGAAAAACCTTTGGAATTTTTACAACTGTTCTTATCGG
TTTTGTATGTAAATAGTAAACGTAGTTATGGACAagacaaattaaaaaca
aatttcgaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_243:370935..379000-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054626 ID=TCONS_00054626|Name=TCONS_00054626|organism=Clytia hemisphaerica|type=transcript|length=8066bp|location=Sequence derived from alignment at scaffold_243:370935..379000- (Clytia hemisphaerica)
GTATGTTAATCAAGGTATTATTTTTCTAACTAATCTCATAATCACTTTAA
CATTGACAATCTGAGGTTTTTAAATTCGACAAGTTTTTTTTTTTATTTGA
ACATCCAAAAAATTGAGGCCTTCGAATGTTCTTAACTTTTTTAGTTTTAA
GCCGAGAAATGTTCTTGAAATATTCTTAATTTCACCATATTGTGAATATT
TTTATGCAATTTTCTAAGAAATTGGGTGTTTTAGATAAATGTTCTTAGTT
TGTTCTTAATATTTTTGCCATCGAAGCCTTGTGTTTTTATATGGTTTGTT
CTTACTAAAAAACGTTTACTATCCTTATCTTCGTGTGTCTTTGTAACAGA
ATAAAATGTGAATTTTGTAACATAATAGGTCAATTTTCTTAGTAATATTT
TCTCATTCCCATTTGATTTGAGCACGTGATATAATGATATAATGACTCTC
TCGATTTGTGGGAGATAAGTAATTACTTAATCTTATTAATATTACATATT
ACGCATGTTACTTTGAAATATAATATTTTCTTTCAATTTAGATTTATTAT
CCAGAGCACGGAATTGTTCACAGAGGTATGGCGTAAGGTAAGTTTCTGTA
TTCTCATTAAAAAAGTTAAGGGTCAAAAAGGGGCATAAACTTGTTGGGGA
AAAAAAGTCGTGAAATAAGCCACTCGGAGAAACGTTAATTCTACTCAATA
AATTTCGTCAATTCTCCTTAACAATATTTTTGAAAAGTTGTCTGACTGTT
GCAGCTTAAGTATTTTGTTTGATACATGTTTTTTTATAAGAACAAACTAT
ATAAGAACGTAAGGCTTCGTTGGCCAAAATGTTAAGAATAAGTTGAGAAC
ATTTCAAGGCTTTGCGGACTCTAAAACACCCAATCTCCTAGGAAAATGGA
CAAAGATATTCACAAAATGGCCAAAATAAGAACATGTTAAAAACATTTTT
AGACTTAAAGCTCAAAAAGTCAAGAACATCCGAAGGCTTCAAAAATTTTG
GATGTTCTTATAAAAGAAACGTGTAATGTTTAATAGTTATNCAAGAACAT
CCGAAGGCTCCAAAAATTTTGGATGTTCTTATAAAAGAAACGTGTAATGT
TTAATAGTTATACGAATCCGTGGGATGGGAGACAAAATGAAATCTTTTGG
CGGGCATTTGAAAGTCGGGTGAATTAAAAGGTTCTTTATGAACTTTATCA
TGTTTAAACGTTTCCAACATCTACACAGATCAGACTGTTTGAAAGTATGT
AAAATTTCATGAAAAAGAAAATCACTGTTGTATTATGCTGAATATACGTT
TTGTTTTCAAAATATGTTTTCAAAAAATAAACTGAAAACTAAACTATTAA
AAACTTATACTAAACTAAATAGAATTTTTTTTTTTGATTTGAATATTAGA
AGTTTGATGGTTCGGATATTGAAACTACAATTTTATAACAATAAAGTATA
CTCTTTATAATTGATTTTTGAGACTTAGCTGCACTTGGCGTAATCGAGTA
TTTCCTTGCTCCTGCTATGAATCGAAATTTATGTTAAGCTTTCAGTATCT
CTTGCTTTAATTCCATTTTTTCATACTCTTGCCTATCTCTACTTGATTTT
TAGCCACTCCAGGTTAAAAAGTGTTTTTGTGTTCTACCTTGAGGGAACTA
ATTATAGCGGGAACTAATTTTCACGGTCGAAAAAAAAATCTGAAAAATTT
CATTTTGCGGGAATTGATTTTCGCATTTTTGCCTTACTTTGGACACATTT
CTTTCATTTTACTAGGGATTTTTCAATTTTTTTGATGAAAATTGGCCAAA
TTTGTAATTCGCGGTTTATGCCGAAAAACTGCAAAAAAAGCGAAAATTTG
TTCCCTTAAGGTACTTACGTTTCACGCTGTCATTCTTATGAAAATTTTTC
TTATAAAAAAGTTCGATTAAGATTTATATCAATTCTTACACTTGCTAATC
AAAAGTCTTTCTTTACTTGACAAATTATATGTTGAGATCTTTTTAAGATG
AAGACCGGTTATTTTTCATTAGAGGCATCCGATTTTGTGCAACTTGCCGA
CTGGTGTTATTAATTAATCAATTTGTGGATCACTTATATTTTAATCAAAT
TATCCATTCTTAATTATTTATTCATTTTATTTGACTGTGTGTCATTTTTT
GAAGACTTTGGCTCGCCATGTTTGCAAACACCAATTCTTTTCGTCCTATC
AATTTTTCATTTGTTTTGAATTGTTTGATTGAGTGTAATCTTGAACTTTG
ATTGGCTCTCGAAACATTGAATGACTTTCTCAAAGTAGCAATAAAATTGA
ACTCTGGATGGATTTCATTGGTTATTTAGTGTGATTTTTCAGAGTACTTT
GAGCATTTTTGATAGCGTCTTTCTAAGCACACCGGTTTGAATCAGGTATT
CTGGATTCAGATTGAAGAAATTTGATTCATACGAAAAAAAAAGGGAAGAA
GATTTCTCTGTTGCTTTTTTATCTCGAGCACACCGTCTCATTTTGCAGGG
GAAATCAGAAATCTCAAGACGTTACTGTGACAAAAAGATTTTTTTGCAAT
TACTTGACCTTGTTTGATTATTTTTTGAATTATTTTTCTCGACAGATTTA
AATTGTTATTCTCCTTGCTACATACAATAACAAAACAAAATGGTAAGTAA
ATTTGTTATATTTATTTGTTGGTTGAGCCTGCAGGTTCTTACAGGTTCAT
CTTTGTGTTTTTATACATACCAAATTTTGTTCGCATCGACCTATCTGGGG
GTGGGGATGGGTGAAAATGGTCACCTAATTATTTCAGTTTTAAGAGGAAA
GGGATTTATCATTTTCTGGGACGAGTACGATTGAACAACATTTAGAAATG
TTTTTTTCTTGGTTTTAATACGTTTTTATTTCTTGCAAATGAAATTACAC
CTTGTGGTTTTGAAAAGGGTTCTTTCTGACCCGACGAAGTTTACTACCTC
AGATTATTTCATTTGACCTGAGTGCTCTTGAAATCGAGTTTATTACAAAA
CACTTTGAAATGAAAGTCCTATTGGAATTGTTGTTCGAAATTTAAAGTAT
ACAGCTTTTCTGTTCTAAATTTTCTTTTAAACTCTCGGTTTCAGACTATT
TATGAAAATAACAAAGGAACTTTTCGTTAAAAGTGAATTGGGCAATGATT
TCTGCAAAAAAATTGCGAGCTAAAAAAAATTCTCCAAAAAAAGAAGATCT
TGCAAAATCAGCGGCGACCCCTTGTTGTGAACTTTGAAACAAGTAATTCA
CTGTCATGAATAAATTATGCTGGATTTCTTTTCAACCAATCATTCTCTAG
TCTTTCTATCAGCAAGGCGTTCATTCGTTGATATACTAAATTATGCATGT
GGTTTACATATGAACCTCCTTATATCATCATTCCGTTTCTAGCTTGAACC
GTCATAGCAATAATTTATTCATAAATGGGTCGTCCAGAATAATTAATCAA
TTTTTTTTTCTGCTCGCAATTTTTGTTCAAGTCTAGAAAATCTCCGGGAT
AAACACAAAGGAAAATGATAACTTCCTATTACTTCCAAATTTCATTCATT
CATCTTTCCACGAATGGTTTTAGGCAAATCGAAATAATATCACATTCCTA
GCGTTTGCCGATGTTATGAACCGTCTATAACAAACTTTTTGCCATCATGT
TTTCTCCCTTTTTCTCTTAGAGAGAGTGCGTATCAATCCATATTGGACAA
GCCGGTTGTCAAATCGGTAACGCATGTTGGGAACTATACTGTCTGGAGCA
CGGTATTCTTCCCGATGGTACTCCTAACCCTAACCATGAAAAGGAACAAG
GAGACTCTGCTGTTTCTTTTTACTCCGAAATGGAAGAAACCGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAAATTTGTATATTTTTGTAAATTTTGAATATAATAA
AATAAAACCAAGAAGAACACAAACATGAAATTTTGTATTTCACGAGTTTC
TCAGTTTACAATTCCTAGCATTTGCCGATGTTATGAACCGTCTATAACTA
ACTTTTTTGCCATCATGTTTTCTCCCTTTTTCTCATTTAGAGAGAGTGCG
TATCAATCCATATTGGACAAGCCGGTTGTCAAATCGGTAACGCATGTTGG
GAACTATACTGTCTGGAGCACGGTATTCTTCCCGATGGTACTCCTAACCC
TAACCATGAAAAGGAACAAGGAGACTCTGCTGTTTCTTTTTACTCCGAAA
TGGAAGAAACCGGCCGCCAAGTTCCGCGAGCTGTTTATGCTGATTTAGAA
CCCACTGTTTTAGGTAAGGTCTTCATTTGTGAGTTTTCTACGGAAACTAA
TTGTTCGCTTCTTCAATCGGATAAATTTCACACTGATTTAAATTTGCGAG
TTACCGATCTCGAGATTTAATTTCGCGAAAATAAAAAGAATTAACAAAGA
TGCGAATAAGAAATTCACCTTAAATTCAAACATATATTTCTTATTATGTC
TTGGGAAAACGAATGACAAAATTTTCGTCTAATCTCGAAAAAAACGGAAC
AAATTTTATATCCTCAAAATTTATTTTAGACGAAGTGCGAACCGGTGCTT
ACCGTGAGCTTTTTCATCCGGATCAACTAATTAATGGAAAAGAAGATGCA
GCAAACAACTTTGCACGTGGTCACTACACGATTGGTCGAACCCTTATTGA
CGAGATTATCGACAAAGTTCGAAAACTTGTAAGTGTGGTCATGTCTTGCT
CTTTTGTGTAAAAGATTTATTGATTTTATAAATTTCACCCATCGAGATTT
TAAGAACTGATTTGGAACACCAAATAGGAGATATCCTCGAACTAATGCTC
TTATAATGACGTTATATATTTAATTCCCTGCAAGAATCCTTTAACACATT
TGCTGCCGCCTGCAAGTAAACTCGTGGAGGAGTCAAAATACCGCTTGTAT
TTCAAAGGGCTATAATTTTTCATTAAGAAATTTTTGCTTCTGCCGCTTTT
TATTGCATTTTGAAATCTACGTTAAATTCTGCGTCGATTGGTATAATATG
CAACTGTTACTTCCAAAGGAGTCTCAAACTTTCGTATTCTTTAAATTCTA
TTTTCGTTTCTTTTGTGTTTCAGACGGACAACTGTTGTGGTCTTCAAGGT
TTCTTGATCTTCCATTCTTTCGGCGGTGGTACCGGATCTGGATTGACCGC
ACGTCTTATGGAACGTCTCTCTGTCGACTACGGCAAAAAATCTAAACTCC
AATTTTCCGTATACCCAGCTCCACAAGTCTCGACAGCTGTTGTTGAACCT
TACAACTCAGTTCTCACCACACATTTTACTTTCGATCATTCCGATTGTGC
TTTCATGGTTGATAATGAAGCTATCTATGATATCTGTCGAAAAAATTTGA
ATATTGAACGACCTAACTATACCAATCTGAATCGATTAATCTCTCAAGTT
GTCTCATCTATCACAGCTTCTCTACGGTTCGAAGGTAAGTCAGAAACATT
ACATGCTATGATGCCTTTACATCTCTGACGAAATGATGTGGATTTTGTAG
ATATTTTGCCTAATTATTTGATTTTGTTTTTGTGTATAAGAAAACAATTG
TTTGTATAAACTGATACATAAATAGTTTAATACTGTATAGAAAGATGTAA
CTCCTATTGTCTTTAACTTTTAGGTGAATTGAATGTTGACTTGAACGAAT
TCCAAACTAACTTGGTGCCGTATCCCCGTATCCATTTCCCATTGTCAAGT
TTTGCTCCAATCTTGGCCCCTGATAAAGCACAAAAATCGTCGTTACACGT
CGCTGAGATCACTCAAAATGTTTTTAAACAAGAAAATCAAATGGTAAAAT
GTGATCCCAAACAAGGAAAATACATGTCATGTTGTTTACTTTACCGTGGA
GATGTTGGCCCTCAGGATGTCAACAAGGCTATTGCAGGAGTCAAAGCCAA
ATCAGATATTCAATTTGTTGATTGGTGTCCAACTGGATTTAAAGTCGGTA
TTAACAACCAGACGTTACACGCACAAGAAGGTAGCGACATGGCACCTGTT
AAACGTGCTCTCTGTATGTTGAGCAACACCACTGCAATGGCTGCATTGTG
GGCACGTTTGGATCATAAATTTGATTTGATGTACCGAAAGAGAGCTTTTG
TTCATTGGTAAGCTATTTTGTCATCGTATTTTTTTATTTTGCTAACTTGC
AGCTCGAACTATAAACTTACTACTTTAGGCAACATGCTTTAACGTTTTAA
GTAATTTTGTAGCGCTCCAGCAACTTTTATCTCATTGATTCAAGTCAGAT
ACAAGTATTTATTGCCTGCTTAAGGGCAATTGGTTAATGTATTCGCTTTT
AGCTTTAGATAGCTTGTGATTCATTTTACTATCTTCAGGCTAAGAGATTG
TAGCAACTTCAGTTCTGTATTTCAAAAGAAAATCATTAACTCATTTAAAG
TAAACTTTCTCATCTGTCGTTTACAGGTATGTCGGTGAAGGTATGGAAGA
AGGTGAATTCAATGAAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTGATT
ATGAAGAAGTGGGCGGTGATTCGCCAAACTCTGATGAAGGAGAGATGGAC
GATGAATATTAAACCCCCTGACCGCCCTATTTAGAAACATTTTTTTTCCA
CGATCAATCAATAAATCACTTTGAACCATAACCTTTTGACGTTGCATTTC
TTTTATGGTATAAGTGAAGTTTTTTGATGTGACACCTTTTTTTAGAAAAA
ATTCTGTATAAGTTAGAACCCACCTTCCCTTTCAACACAATAATTTTTCA
TCTCGAATATACTTGACCACCGAGCCACATCAGTCCTAATGAACCACAGG
GCTATTCCGCACTTTAATCCAAGTATAAAATTTATAAACAGAATTTTATA
AGAAAAATTTTTGATACAACTATTTATTATAGCCATATACATGGATATTT
TATTGTCGTGTATAATTATTATTGTCTTTTCCTCTCACTTTTAAAGTATT
TGTCTGTAAGAAAAACCATTTTAAATAACTTTAAATTTTTTTTTAAATTA
TGTTTGTCATTATAGGAAAAACCTTTGGAATTTTTACAACTGTTCTTATC
GGTTTTGTATGTAAATAGTAAACGTAGTTATGGACAAGACAAATTAAAAA
CAAATTTCGAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034417XLOC_034417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054626-exon-scaffold_243-1575043694:378987..379000TCONS_00054626-exon-scaffold_243-1575043694:378987..379000Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:378414..378459TCONS_00054626-exon-scaffold_243-1575043694:378414..378459Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:376359..376405TCONS_00054626-exon-scaffold_243-1575043694:376359..376405Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:373788..374010TCONS_00054626-exon-scaffold_243-1575043694:373788..374010Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:373373..373521TCONS_00054626-exon-scaffold_243-1575043694:373373..373521Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:372617..372977TCONS_00054626-exon-scaffold_243-1575043694:372617..372977Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:371944..372427TCONS_00054626-exon-scaffold_243-1575043694:371944..372427Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1575043694:370935..371624TCONS_00054626-exon-scaffold_243-1575043694:370935..371624Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:378987..379000TCONS_00054626-exon-scaffold_243-1510915933:378987..379000Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:378414..378459TCONS_00054626-exon-scaffold_243-1510915933:378414..378459Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:376359..376405TCONS_00054626-exon-scaffold_243-1510915933:376359..376405Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:373788..374010TCONS_00054626-exon-scaffold_243-1510915933:373788..374010Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:373373..373521TCONS_00054626-exon-scaffold_243-1510915933:373373..373521Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:372617..372977TCONS_00054626-exon-scaffold_243-1510915933:372617..372977Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:371944..372427TCONS_00054626-exon-scaffold_243-1510915933:371944..372427Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1510915933:370935..371624TCONS_00054626-exon-scaffold_243-1510915933:370935..371624Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:378987..379000TCONS_00054626-exon-scaffold_243-1491911889:378987..379000Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:378414..378459TCONS_00054626-exon-scaffold_243-1491911889:378414..378459Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:376359..376405TCONS_00054626-exon-scaffold_243-1491911889:376359..376405Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:373788..374010TCONS_00054626-exon-scaffold_243-1491911889:373788..374010Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:373373..373521TCONS_00054626-exon-scaffold_243-1491911889:373373..373521Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:372617..372977TCONS_00054626-exon-scaffold_243-1491911889:372617..372977Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:371944..372427TCONS_00054626-exon-scaffold_243-1491911889:371944..372427Clytia hemisphaericaexon
TCONS_00054626-exon-scaffold_243-1491911889:370935..371624TCONS_00054626-exon-scaffold_243-1491911889:370935..371624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:370935..379000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.689e-06	0	68.25	45.1482	18.6358	19.65	25.0143	20.1824	19.9099	25.6055	46.8672	55.181	38.565	51.5647	31.0032	24.9402	32.6861	43.0379	7.06486	13.3643	8.54144	20.1677	24.6727	18.8436	82.4961	50.9808	1.934e-09	0.260827
Blast
[Close]
BLAST of TCONS_00054626 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 328/447 (73.38%), Postives = 376/447 (84.12%), Query Frame = 3 
Query:  105 MRECVSIHIGQAGCQIGNACWELYCLEHGILPDGTPNPNHEKEQGDSAVSFYSEMEETGRQVPRAVYADLEPTVLDEVRTGAYRELFHPDQLINGKEDAANNFARGHYTIGRTLIDEIIDKVRKLTDNCCGLQGFLIFHSFGGGTGSGLTARLMERLSVDYGKKSKLQFSVYPAPQVSTAVVEPYNSVLTTHFTFDHSDCAFMVDNEAIYDICRKNLNIERPNYTNLNRLISQVVSSITASLRFEGELNVDLNEFQTNLVPYPRIHFPLSSFAPILAPDKAQKSSLHVAEITQNVFKQENQMVKCDPKQGKYMSCCLLYRGDVGPQDVNKAIAGVKAKSDIQFVDWCPTGFKVGINNQTLHAQEGSDMAPVKRALCMLSNTTAMAALWARLDHKFDLMYRKRAFVHWYVGEGMEEGEFNEAREDLAGLERDYEEVGGDSPNS-DEGE 1442
            MREC+SIH+GQAG QIGNACWELYCLEHGI PDG    +     GD + + +      G+ VPRAV+ DLEPTV+DEVRTG YR+LFHP+QLI GKEDAANN+ARGHYTIG+ +ID ++D++RKL D C GLQGFL+FHSFGGGTGSG T+ LMERLSVDYGKKSKL+FS+YPAPQVSTAVVEPYNS+LTTH T +HSDCAFMVDNEAIYDICR+NL+IERP YTNLNRLISQ+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFPL+++AP+++ +KA    L VAEIT   F+  NQMVKCDP+ GKYM+CCLLYRGDV P+DVN AIA +K K  IQFVDWCPTGFKVGIN Q      G D+A V+RA+CMLSNTTA+A  WARLDHKFDLMY KRAFVHWYVGEGMEEGEF+EARED+A LE+DYEEVG DS +  DEGE
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGE 447
The following BLAST results are available for this feature:
BLAST of TCONS_00054626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+073.38Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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