TCONS_00054412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054412
Unique NameTCONS_00054412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054412 ID=TCONS_00054412|Name=TCONS_00054412|organism=Clytia hemisphaerica|type=transcript|length=2608bp
GAAATtataagaaataagaattttaatcGAATTCTATATCAATTTTATAC
GAATcggaaagattttaaaagtcaGTATCATAACCAAAAGAGCGTTTGCA
CGGAAAGTTTTCTGGtcaattttggtattttttgaaaatgtgtgtGGTtt
tatgaagaagaaaatgtctGCTACCATGTTGAAGATTTGGTTCTACACAT
CCCTGCTACTTTTTGTCGCCGTTGCTTCAtcaaaagGCAACAAGAGACAT
TTGGGTTTACCACACGATCTTCCAGACATTTTGAAGAACGATAAAGTTGA
TGCAAATGATTTGAAATATGCAACAGACGATTTTCGTGTTGATACTCATC
CGAATCAAGGAGTCATCATCGAAAGTGAAGGCGTCGGAGGACCTCATAAG
AAAAGCCAAACCCTTCAGCCCAAAAAGAAGGGTAAAGAAATGACAGGAGT
GAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGAATTACCGTTAG
TTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTCCTGCACCGATC
GAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCGATAGAACCGAT
GCCGGAACCAATCATATCACATGTATCTGAACCAGTCCCTATTATCCAAC
AAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCATTCATCATGAG
CCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCTCCACCGCCACC
GCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAAAGGAAAGCTTG
CTATCAAGATGAAACATTGTCAGAAATGtgatttttcaaagaatatcgag
TCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTAGAAGACAAACT
AAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAAACGAGGAGGTA
AAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAATCAAAAGATATT
AAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTACGACCGCCTAGA
CCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGAGGAGGGCGAGG
AAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATGAACCAGGACAA
GACGCTTTCTTCAGGAAAGCTGTCaacattccaaagGTGTTTATCCCATC
AGCTGCTTACAAACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCA
TGTTGAAATGTGTTGTCCCCaaagatgaaaacaaaaaatcttctaaaaaa
gaaaagatagatGACAATTCATCTTTTATTTCGTTTATTACCAAGCCAAC
TGAAGCTCCAGCAGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATT
TTTCTAACAATGTGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGC
TTCACCAAAACAGCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGT
TAGTGGTGTAACCAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAG
ACGTAACCGATACTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCA
GCTGAAGCGGCGCCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATC
AGCTATACAAAATATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGG
CCGGTGTGACACAACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAA
CCGTCACCtgaaacacaaaacaaaaaatttgctgATAATTTTATGAAAGT
CTTGGATAAAGATATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATA
TTATGAGTGAACTGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCA
CCTTCAATGACTGAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAG
CAATGAACGAACAGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTT
TGATTGCACCACCAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTA
AAGAGATCGGAAACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCG
TCCAAAGATTCGTGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAG
CTGATGAAAGCGGATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGAT
GATCATGAGAAAGATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTT
CATGAAAGGGGCTTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAG
CTCCATATCAAAACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCA
ATCGAAGTCGGTCAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGG
TAAATTACCCAGGGTTCCActcaaaattactttaaatCCCAAAGGACCGT
TAGCCAAgctgaaagaaccaatcacgaTTGATTTGAAACCTCCAGATGGT
AAACGATCAAACTCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGC
AGTGACTATCGCAGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAG
ACCAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_242:1547742..1554093-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054412 ID=TCONS_00054412|Name=TCONS_00054412|organism=Clytia hemisphaerica|type=transcript|length=6352bp|location=Sequence derived from alignment at scaffold_242:1547742..1554093- (Clytia hemisphaerica)
GAAATTATAAGAAATAAGAATTTTAATCGAATTCTATATCAATTTTATAC GAATCGGAAAGATTTTAAAAGTCAGTATCATAACCAAAAGAGCGTTTGCA CGGAAAGTTTTCTGGTCAATTTTGGTATTTTTTGAAAATGTGTGTGGTTT TATGAAGAAGAAAATGTCTGCTACCATGTTGAAGGTGAGGTCAAACTTTT GTTTTCTTTTGTTTTCTTTTGTTCTTGCTATATATTTGTGGTACGTTTTG TTTGGAGCTCTCGCATGGAAACGAAACACTAATAAAATTGTCAAATTTTA TGTGATTATCTTCCTGACTTAAATCCAACTATCCGAAAATTACCTCTCCT ACGTCCTAGATAGAAACTTTTCGTGTGTTCATGATAAAGCTATGCACATG TTGTTCTAGCTGTGTAAGAAAGCACAAAAATATGTTGATACCAATATACT ATCTCCCCTTGTGGGTAATCTCTGTGCCAGGGCGAATCTTACGTAAAACG TACCGTGGGGAAGGGGGTTGTACTTTTGCGGTGTAAAGGGATTGGCCCTT TTTTAGTATGGTATTACGGGACTTGACAAAAAAGAGACGGGAAAACAGAT TTCCATAGATATTGGGTCTCTGGCCCTGGCAGTGTTCTTTTTTACATACC TACACTCTGTTCCGTTCTCAAAAGGAAAGTATAATTAATACACCATGCGA TTCCTACTTTTAGATTTGGTTCTACACATCCCTGCTACTTTTTGTCGCCG TTGCTTCATCAAAAGGTAATTATTTTCAATTTGGGCTAAAGTCCTCAGGA TCTCAGGATCTCAAAAGCTCATAATTCGTATTCCAATAAGGCTGAGAATA TAGCCTAGAAGCCACTGAACCCCTCCAAAATCGAAATATCCAATGAAATA AAGTGGAACTAGCCGACTGATAGTGTGAAGGTTTCGATCACAAACTTACA CTGCAATGGACTGTGTTCGAATCCCAAGCACTTTCAGGCAGGGTGCTAGG GGAATATGGTGATAGACTCTCACTCATTAAGTGGAATTACTAAATTGGCA ATTCTCACCCGAACTTTAAATTCTGAGCAACGTTAAAATGCACAAAATTC TCAATATATTTTGACCAAGATTGCAGAAACAATACATTTAAGTTTTTTAT TATCAGGCAACAAGAGACATTTGGGTTTACCACACGATCTTCCAGACATT TTGAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGA TTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATCGAAAGTGAAG GCGTCGGAGGGCCTCATAAGAAAAGCCAAACTCAAAAGTTAAAAGGTTTA TCCATGTTTTTGTTTAACCCTTTAACTGCAGTTACTTGTTTGCTACCAAA CTGAGGTCGTGCGCAGACCAGGGAGATACTAGGATTCAGAGCTGACGGGT GCGTGTCGCCCGACTTCTGCCGCGCCTACTTCGCCGACCATAAAATGCTG AGTGGGTAGTGGCCTTTAGTGAGACTAAAAAGTAGGGAAACCTTTGTGAA ATTTACAACCCTGCTTGGGACTAATTTGACCTAATTTTGATCTTTCAAGG AGCAAATCCTTGAAATTTTCCGATTTCTCCGACCCTTAGTGGGACTGAGA TTTAATTTTCTGACCTTCTCAATCTTAATAGGAACTGCCAGGTTCCAAAA AGACACCCTTAAGGATGGCACATACCTGTACCCTTCACTTGCCTTGGAAC CCCTCTGGGCTCAGCTATGCGTGTTGGCACATTATCATATGTAGGTCTTC AAGTTCCGTTTGCGTATGTGTGGTTTTTTGACAAGCCTCCACTATCTAGA TTAAAGGACCACCCCCGTAACAGAATATCTTTCTTTTTATTTCTTTCGTA GAAATCACAGGCAACAAGAGACATTTTGGAATGCCACACGATCTTCCAAA TATTTTGAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAG ACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATAGAAAGT GAAGGTGTCGGAGGACCTCATAAGAAAAGCCAAACTCGGAAATCAAAAGG TACGTTTTTCTGTAGTTTGTTTTGGCTTTCGTACAGTGTCCTCTTTTTAT GGAACATTAGACGCTTCCTGGTCTAGGATGGGCGGAAAATCTGGTGGCTC AAATAGTGATTACCTGAAGGCGTTTTAAAGCATCGGCCCGTAAAAACTTA AAATGTTATCAATCGCGTGTGAATGTGAGTATTTTGTTGAAATTCCACGA TCTATAAGTTCAAAGACCCTAAAATCCATCGAATCATCACAGAATACGGT CAAAGAAAAATTACTTTGATAATATCTGCGAAATTGGTTTAACCTCGACT TTCCAACTAATATCTGAATCCTTTCTTTAAATTCAAAATTTAACTTTTTG GCTATTTTGTAGATGTCACGTTCAACAAGAGACATTTGGGAATGCCTCAC GATCTTCCAGACATTTTGAAAAACGATAAAGTTGATGCAAATGATTTGAA ATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCA TCATTGAAAGTGAAGGCGTCGGAGGGTCTCATAAGAAAAGCCAAACTCAA GAATCAAAAGGTATTTTCACATCTTTTTGTCGTTTATTTTGGCTTTCGTT TTAGAAGATTAGCTAGTTCGCACTTTGAAACTGCTATTTTTGATACCGCC TGATAAAGGACGGGCAGGAAAAGCGGTAAAAGCGGTAAAAGTTATAATAT TATCGGTCGTGTGTGTATGTGGGTATTTTGTTAAAGCTCGAGGCTCGAAA TTCGAGAATCCTAAAATCTCTATCCAATTTTCATCGAATTTGGTCAGAGA ACAATTACTTTCATTATGGTCTTTGTGAATTTTGTTTAACCTCAACTTTC CGTCATAGTATCTAAATCCTTTATACTATTTCCAGATTTTTCCTCTTTGA CCGTTCTTTTTCGTAGACGCAACGTTTGACAAGAGACAGTTGGGCTCGCC ACGTGATCTTCCAGACATTTTGAAGAACGATAAAGTTGATGCAAATGATT TGAAATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGA GTCATCATCGAAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGCCAAAC CCTTCAGCCCAAAAAGAAGGGTAAGTTTACATTTCTTTAACGACAGACGT TCGTAGTGCTAAAACACTGAAGAACATGCTTTCAAAATGCTTGTCTGAAA GATTCTAGCATCAGGTTCAAATTTCTGGCCAGATGATTGGAGAAATTGTT CTCGAAACGTAGCCGAAAGTAACTCTCGTGATTCAAGTCGTGCTAAACCT TCAATATAGATATTAGCTCTGTCTTCTAAAATAAGTACCATTTAATTTCG CGATTTAGCCATTTTGGTGTGTTTCGCGGAATTTAATTTCGCGAATTACG CCCAAATTCGCGAAATTAAATTCCGCGAAAATTTCTTCCGCAAAAATTTC TTCCCTTAAGGTAATAGTTATCGGACAATTGCGAGTACAATATGAGAAAT ATTTTACGAGTTCCGAGATTTTTCCGTATAATATTTTCCGAGTCTTTAGA GGAGGAAAATATACGGAAAATCTGGAACGCGTGAAATAATTCTATATTGT ACGAGCAATAGACGATATCGGCTTAACGAAATTCTCTCCGAATGATTACC CATGATGCATTGCGCAAAAAAATTCAGTAAGTCAATATTGTCCGTGAATT TTTTTGCGCAATGCATTATGGGTAATCATTCGGGGAGAATTCAGAAAGCC GATATCGTCTATTGTCTAATAACTATTTTTCTATGACCTTAGGTAAAGAA ATGACAGGAGTGAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGA ATTACCGTTAGTTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTC CTGCACCGATCGAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCG ATAGAACCGATGCCGGAACCAATCATATCACATGTATCTGAACCAGTCCC TATTATCCAACAAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCA TTCATCATGAGCCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCT CCACCGCCACCGCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAA AGGAAAGCTTGCTATCAAGATGAAACATTGTCAGAAATGTGATTTTTCAA AGAATATCGAGTCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTA GAAGACAAACTAAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAA ACGAGGAGGTAAAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAAT CAAAAGATATTAAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTAC GACCGCCTAGACCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGA GGAGGGCGAGGAAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATG AACCAGGACAAGACGCTTTCTTCAGGAAAGCTGTCAACATTCCAAAGGTA TTTCTACCTTATACATACTTTTTGTCTTCGGCTTAAGTTTGCTTTCACCC ACTGGAACCTTAGTAATTCAAACTAATCATAACTCGTTGGATAGATTGTT TTCCTTAAATTTCCAGTTATCATGGTCTTTGTGCGAAGAGCTTACGATTT CAGAATTTATGCGTATTTAGACCTGTAAGTGTAGGATCTAGTCAGATAAA TTTTAGCCTTCTAGGGCGTCATGATTTTCTTGATATTGATTACTATGTAG TTTCATCACTTATCTGATTATTTATTTCAGGTGTTTATCCCATCAGCTGC TTACAAACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGA AATGTGTTGTCCCCAAAGATGAAAACAAAAAATCTTCTAAAAAAGAAAAG ATAGATGACAATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGC TCCAGCAGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTA ACAATGTGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACC AAAACAGCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGG TGTAACCAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAA CCGATACTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAA GCGGCGCCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTAT ACAAAATATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTG TGACACAACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCA CCTGAAACACAAAACAAAAAATTTGCTGATAATTTTATGAAAGTCTTGGA TAAAGATATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGA GTGAACTGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCA ATGACTGAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGA ACGAACAGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTG CACCACCAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGA TCGGAAACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAA GATTCGTGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATG AAAGCGGATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCAT GAGAAAGATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAA AGGGGCTTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCAT ATCAAAACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAA GTCGGTCAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATT ACCCAGGGTTCCACTCAAAATTACTTTAAATCCCAAAGGACCGTTAGCCA AGCTGAAAGAACCAATCACGATTGATTTGAAACCTCCAGATGGTAAACGA TCAAACTCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGAC TATCGCAGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAA AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034297XLOC_034297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054412-exon-scaffold_242-1575043694:1553910..1554093TCONS_00054412-exon-scaffold_242-1575043694:1553910..1554093Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1575043694:1553329..1553380TCONS_00054412-exon-scaffold_242-1575043694:1553329..1553380Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1575043694:1552794..1552937TCONS_00054412-exon-scaffold_242-1575043694:1552794..1552937Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1575043694:1550874..1550924TCONS_00054412-exon-scaffold_242-1575043694:1550874..1550924Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1575043694:1549447..1550201TCONS_00054412-exon-scaffold_242-1575043694:1549447..1550201Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1575043694:1547742..1549163TCONS_00054412-exon-scaffold_242-1575043694:1547742..1549163Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1553910..1554093TCONS_00054412-exon-scaffold_242-1510915933:1553910..1554093Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1553329..1553380TCONS_00054412-exon-scaffold_242-1510915933:1553329..1553380Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1552794..1552937TCONS_00054412-exon-scaffold_242-1510915933:1552794..1552937Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1550874..1550924TCONS_00054412-exon-scaffold_242-1510915933:1550874..1550924Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1549447..1550201TCONS_00054412-exon-scaffold_242-1510915933:1549447..1550201Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1510915933:1547742..1549163TCONS_00054412-exon-scaffold_242-1510915933:1547742..1549163Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1553910..1554093TCONS_00054412-exon-scaffold_242-1491911889:1553910..1554093Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1553329..1553380TCONS_00054412-exon-scaffold_242-1491911889:1553329..1553380Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1552794..1552937TCONS_00054412-exon-scaffold_242-1491911889:1552794..1552937Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1550874..1550924TCONS_00054412-exon-scaffold_242-1491911889:1550874..1550924Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1549447..1550201TCONS_00054412-exon-scaffold_242-1491911889:1549447..1550201Clytia hemisphaericaexon
TCONS_00054412-exon-scaffold_242-1491911889:1547742..1549163TCONS_00054412-exon-scaffold_242-1491911889:1547742..1549163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1547742..1554093 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5.93043e-06 0 0 0 0 0.0258004 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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