TCONS_00054259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054259
Unique NameTCONS_00054259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054259 ID=TCONS_00054259|Name=TCONS_00054259|organism=Clytia hemisphaerica|type=transcript|length=1180bp
CCATCACCATCGAGATGAggttataagaaattttatatttatcgaatgaa
aatttattttgttgaaataCTTCAGCTTTGCCGTTTGTTTTTTAGGTAGG
AGAGAGAGCGCGGAGCTGTAGACAAAAGCCATTTATAGTAATGTGACCAT
GACATTGATTTCCGGCGACAAGTATGAATAGAGATGTCTAAATTTAGTGT
AGCAACAAGGATTGACAATGAAGTTTGCTGTCGTGGTATCATTACTAACA
GTTTTGGCTTGCGTTTGTAATGCTCGTAAGCTGAAGATCGTGACGGTGGC
AACCGACGAAACAGATGGATATTTACGTTTCCAAAGATCAGCCAAATTGT
ATGGTCTAGATGTGGAAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGT
GATATGGCTAATGGTCCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAG
ACATTTGAGGaaatatgaaaatgaagaagatctCATAATGATGTTCACTG
ATAGTTATGATGTCGTCTTTACAGAAGGACCAGAAGAAATTCTAAAGAAA
TACGATTCTTTCAACGCTACAATTTTGTTTTCATCGGAAGATTTCTGTTG
GCCTGATAAATCATTAGCTAAAGATTATCCGGCACCAGACGTTGAGAATG
GATACAGATTTCTCTGCTCTGGAGGGATAATCGGACCAGCAAATAAATTG
TTCGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGATGACCAATT
GTATTACACAAAAATCTTCCTCGAGAAAAGGGATAAGTACAACATGAAAT
TGGATAGCTCAAGTGTATTGTTTCAAAATCTAAATGGAAACAAAGATCAC
GTTGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAATTCACGTTA
TAACACATTCCCATCTGTCATTCATGGTAATGGACCCAGCAAGTTATATT
TGGATCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTTTCTGAGTCT
TGCATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATATTAAGGAAGA
AGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGAACCTACACCTT
TCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGATATCCCAAATCT
AAAATCGATATCTTTCTACATAGTGTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00054259-protein

>TCONS_00054259-protein ID=TCONS_00054259-protein|Name=TCONS_00054259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MKFAVVVSLLTVLACVCNARKLKIVTVATDETDGYLRFQRSAKLYGLDVE
VFGMHEEWLGGDMANGPGGGHKINLLRRHLRKYENEEDLIMMFTDSYDVV
FTEGPEEILKKYDSFNATILFSSEDFCWPDKSLAKDYPAPDVENGYRFLC
SGGIIGPANKLFEVISMEVIENTSDDQLYYTKIFLEKRDKYNMKLDSSSV
LFQNLNGNKDHVELNFDLKNARVTNSRYNTFPSVIHGNGPSKLYLDHLGN
YIANSWSFSESCISCKEDTFLLSDIKEEDWPTILIGLFIPEPTPFVQSYL
RHISSQRYPKSKIDIFLHSVV
Run BLAST on NCBI

transcript from alignment at scaffold_242:1295432..1304261+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054259 ID=TCONS_00054259|Name=TCONS_00054259|organism=Clytia hemisphaerica|type=transcript|length=8830bp|location=Sequence derived from alignment at scaffold_242:1295432..1304261+ (Clytia hemisphaerica)
CCATCACCATCGAGATGAggttataagaaattttatatttatcgaatgaa
aatttattttgttgaaataCTTCAGCTTTGCCGTTTGTTTTTTAGGTAGG
AGAGAGAGCGCGGAGCTGTAGACAAAAGCCATTTATAGTAAGTAAGTgaa
ataacaatctgatgaaAGCTGTTTTTTCTTAGAGTTTTAAAGACTATGAA
CTCGCTATCACAGTTAAAGGTTTAATCCAGCTTCAGATTCATTTTCAGCG
CAACTTGGgctgggaaaatgtttttgaataatGGATCAAAATAGAGTTAC
AAATACTTTAGTTAGTTCTTCTTTGCAAAGAGGAGTAGAAAAAATCTTCT
TAGCCTCTATCTGAATTTACTTCACAAATTGTAGTTCATTCTCAAAAGCA
AATACtggtttaaccctattcaacctaggcttttaggggcggttcagaac
taggggtggggcttttcctgtaccagcCCTTAACtgttgatctagtgggt
cttttttgatgaaatttggcacacaagatccttgtcacataaggtaactt
ttgacaaatttttttttgatgacgtcacttatcatgcccaaagtgagcaa
aaaccgaaaatttcctttgttcttataaatagctattgtattctaacaaa
ggctatAGAGAAAAGTttcctgagtttaaaatgcttattttatcctaaat
attcaataaattacggtttaaacaacatatttgacattaaaaataaattt
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaaggttccttataata
aaaaaaacgtgtaggattTTAATAGCAGAAATGGGtacagttgagttaga
atcatGAAGAAGTCATGAGGAGGAAACTAATACAGGAAGGCATTAAAATT
cgaatttaaagtttttaaatgaTGATACTTCCAATGTCAAATCAACTTCA
AAATATACTTAATATTGCCTTTTGAGTAAGAAAATCAATGTCGTAGGCTT
GTTTTTTCaaatggattaattttcgcgtagACTTTTTTTCACGAATCGAG
AATCGAAAATTTTcgtgtggacaaaatttcgtgAATAGGgctctttttca
tcaaatttctttcaatttcctcGGTGTTTTGATCGATTTTAAATATGTAT
TGGTGAGGGCTAGTATTCGCGAAAACGGCCAAAATTCgtgaaatcaagaa
aattgatccacgcgaaattaagtccacTTGAGTTGGTGAAATCCGAAGAA
GCTGCTCTGTCATCAACAACTTGGCAAAAAATGGCGGTCGCCAGCCTTTC
GCATTTTGAAAGAAGTATTCTAAATTCAGTTatcaataaaattgaaaaag
tagCAGTTCGCTTTTCGGTAACTTTTTGAAGCTTGTTCGCTTTTGAATTT
ATCTTGTCATTTGAAAGAATTCCGAAACCGTTTCCTAAACATTAAAGATG
TCATGACACAGTTGTTTGTAGATATGCTTTCTCGAGGTTGAAGTCTCTTA
TTTCACTGAAAGGTATTATTAAATAGTTTGTGTCAGCCAAAGATTGACCC
ATACAAGGTTCaacaatttgaataaatttagtGTCGAGCTTGTCTCGTAA
ACTTGCAGACAGATGTAGGACCAAAGTGGAAGTACCTCTCCGGTTTTAAG
ATTATTCGTTTATCAAACTCCTTCAGTCATCACCTTAAAATTAGATATCT
CGGAGATTAGGAAGAATTTTGGAGCTCCCAGCTCTATGTAAATTCAGACC
CCGTTTATGACGACTGGGCATTATAACGAAAGCAGTGGGCCCTCACATCG
CCACTAcctacagtagagtctcttctAACTCGAAacttccttaactcgaa
caatctTTCtcccccttcagttaacaataccttataaaaGTCAATACTCC
CTAACTCGAAacttccttaactcgaacaaatttgctttCCCCGTGCGAGT
ATAATCTTCACCAGGCTAAGCGATACATAGTTGTTTGAAGTGACCAATTT
GTTCATATGAGTCACTAAGAAATATTGATTCTATACTATcgtgatgttct
tataaaaaccaaATGAATTGTCACACATTTATCGGGTTGTCATGTTGtat
aaaaattcttataattctttgtttatcttttcgTGGTTGTACTCTCTCTA
TCATTTTCAACTGATTTTTATCTTAGGTAATGTGACCATGACATTGATTT
CCGGCGACAAGTATGAATAGAGATGTCTGTAAGCTTTGTTTTTGTTAAAG
GACATTAACTGACTGAGAAGCTTTAAGTGTCAAACCTCtagatttttttt
acaattttaggagaggattttttttctcttgtcACTGTATGTTAACCAAA
CATTTTGAAAGTTATATGTTTGACGTGGCTAAGAGTAATTTGTTACGAGT
TATTATGTTTCAAATGTAAAGTATATTGTAGCGTGATAAATTTGACAATT
TGAGTTAGATAGTAGTATCAAAACTATCTGAGATTTGTATGAGAGGATAT
TGGAAATCGTCAAGTTTAACTGACTTGGTTTAAAACCAACTGATAAGAAA
CCTAAGCGATATAACCATTTGTTTTCACCGGCCAGTCTTAATAATATTTT
ATCGCTGAACCGTAGCCGCTAAAATCTGTTCCAAATATTTGGTATACAGT
GGAAACTCCATACTTCGGatacgcacggggaacacaaattggTTCGagat
tgtttttttataaggcattgttaactgacggaacgagaaaacttgttcaa
tTTAAGGggatattcgagttatagaggttcgagttaaagtgaCTCTACTG
TAGCAGTGTAAGTCAAATGTTTGAAGGTTTacgttcaaatatttttattg
ttcaaatTGTTTTCTTATGATTTCAGAAATTTAGTGTAGCAACAAGGATT
GACAATGAAGTTTGCTGTCGTGGTATCATTACTAACAGTTTTGGCTTGCG
TTTGTAATGGTAAGTCATATACGTCTCTATAGACGAtattatcgtccgtt
acagtgatataAATGCGGGAAAATATTATACGCGCGGAGATTTACAGCTG
TCATGGCGGTAAACGGAAAGAAAAATCGGCTGTAGGGTTTCGAAGAAGAC
GGCAAATTATACCGACTGTAAAttgttttcagcaaaaatctcATTGGCTA
ATTTTCATaggctttgggcttatttcttagatagtgatttgtcttaaaCT
ACAGCATAGTTTAGTCTCTTTACAATACATAGTGCGAGAATTGTAATACT
AAAAAACGATATTTGATTATAATCAAAACTGCAAGCATTCTTGCGAATAA
TATGAAATTGTTGACCGCAAAATTCGTTCGCTAAAATAAGTAAATCTTGC
ACTATTTTGCCTTTTACTTCACAAAAtttcgtttgtttgtttttctgaCG
TAATGACACATCATCATTATTATTTTgtcaacaaacaaacaaagcaAAGT
GAAATGTTTTGATAGTGATATTTGAACAGGAAGTGCGCCTACAAGAGCTC
CTCTGAATCATTTAACTTCAGTCATTACATACTGTGAATCTAGGTGGATC
ACTCTTTTGCCCATTGTGTGTATAATTGAGTCAAAACTAAATATGAAAAt
agtgcgagccataagggtcccttttcacACCCTCCAAAGTCTctcaaaat
ggtaaaaaaaccattaacaaagaaaattgagtccaaaaatcacgaaattc
aaaatttcctccctcaaagggtcgtgattttccaaaatttgtatTAAAAT
CAAGTGCAAATcgacaaaaattttgagaaatacaATATGAAAGTCCTATC
GAAACAAACATCGTAACATGATTTCTGCCCGGAGAATATTTGCCtaaagg
gtcactttttcatcaaaaatcagtctctATAAGGGATAGGGTTCAGTAGT
CTGATTCGCATGTACTCACTTACTTGTCTCCAAGCCTAGGACTCCCTCCA
TCCGGATCCCTGCCTTTTTTATACGACAACAGAGTAGTTTGGTATTCTAT
GTTGATAGATCGTCCTACGAATTGGCTAAGATGTCTCAAAGCTAAGCCAT
AGAGGGGTCCCATGTTCTTATCTCCATACATCAACTCTTTTTTCGACATT
TTCCACATACATTGGCAAAGAAAAGTAGTTTGACatatttttccttttcc
tcATTTGTAGCTCGTAAGCTGAAGATCGTGACGGTGGCAACCGACGAAAC
AGATGGATATTTACGTTTCCAAAGATCAGCCAAATTGTATGGTCTAGATG
TGGAAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGATATGGCTAAT
GGTCCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAGACATTTGAGGaa
atatgaaaatgaagaagatctCATAATGATGTTCACTGATAGGTTTGTGA
TTGACTTTGatgaaaattgtgtttttgatGCATATTATGATCTTGACGAT
ATTAAATCGAATGTATAAATCAAACTCCCAGACCGCATAAAATCGGaatt
tttcagattatttttaaCCCAccatttaaaatgtttttgcgGGTCGTTGA
AACAGGGGTTGAAATAGCAGTTGAGAAGCTGTTAAATGAAATTCTTTCTT
GAAGTTCGAcaaaatgaaatgattttgCGGAAGGCTTTTTACCGTTTTAG
CTTAAATTATGTAGAGCCTCACAAGAAAGGTTATCAAGGTTTGGTTTGTT
TAAATTATGTCTCTCAACTTAAAGTTGATGAATTGAAATAGCCGAGCTAT
ACAATAATTATTTAACCCTCCCCCTACTTCCATAGTTATGATGTCGTCTT
TACAGAAGGACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAACGCTA
CAATTTTGTTTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATTAGCT
GTAAGtccgaaaaattgttttcacttgcaatgtaaatattttttgcagat
tttaaCGTTTATTCTGACCTTATTTGCAAGCTTATGCAcctgcacttttg
aggacggctgAGTNTTTTTAACGTTTATGCTGACCTTAGCAAGTTTATGC
AcctgcacttttgaggacggtggaGTGACTGAATCGAGCTGGAATAATCC
GCAGTTTTGGCTGAATTACCGTCGTCTTCAATTGATCATGATCTAGCCGA
ATCATATCCTGACGCTCCTGTCGTAGAAGgaaaaaatacataaactcgct
aaaagGCTTGATAAACGGTAGCtctccaattttttttatggaGAGCGATT
CCTTCCTTATAAGGGATAATAAGAATAGAAACCAGCCTCCGTCATTGATT
TTGAGAATCTTCTGTAACTGCCGTTGATTGATAAACAAGCAAGAACAATG
TAAAAAGATCATCCATGATGATgcgagaagaatctctcgaaacgtagcca
aacgtaaatctcgtgatccaagccacgatgaACTTCCAATATAACAAAAT
ATGCTTTATAACTTTTctccttctttttctttcattgcagAAAGATTATC
CGGCACCAGACGTTGAGAATGGATACAGATTTCTCTGCTCTGGAGGTTcg
taattttctttctttctttcttcatGACCTTCTTTTCTTTATTTACCTTA
TCGGGAACAAAAAAGACACAGTGTCACAGTATCTCCCAAACTGCGCACCC
TATTATGTTTCAGTACTGTGCCAACTGCCACAAATTTCGGTGATATCGTA
aactattttcattttcactattACCTTTAGGGATAATCGGACCAGCAAAT
AAATTGTTCGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGATGA
CCAATTGTATTACACAAAAATCTTCCTCGAGAAAAGGGTATGCTTCTTGC
TcaattatattttcaaacaccCAAAAAGCCTTTGGATTatcttgttctta
atatgttggtcatcgaagcctaatgttcttatagaatttgttcttatata
aaagcgTGTAGCCTGAGGTGACTGTAATAGTCCAGTGGCATTCGGTACAA
ACCCTGATCAAAATGATTAGTGAATGAGGTTGAAGAGGAAATCCCTCATG
ATCCCTTTGTGTTAAACAGTTATCTAAAAGGAATCTCTGAGATCACCCTC
GACTGCGATCGCATAACATATTATGTATATTAAGACTTGGTTTATCAATC
GTCACGGCCGGTTTGTGAATATTAACTTTCTCTGCTCTGATTCTTTTAGG
ATAAGTACAACATGAAATTGGATAGCTCAAGTGTATTGTTTCAAAATCTA
AATGGAAACAAAGGTGCGTATATACACATTGGCACACAAGCTAACTTCAT
CAAACTCCAACTCAGTCCTTGCTTTAGTTTGCTTTTTTGTGCCTCTGATA
atatcacgtccatcagtaaaatttAAAGAGTGATGGAATAGGCTCTGGAT
ACGAAATAGTATCTTCATTCCAAACCTGAGTAAATTTCAGTTAAAACTTT
CATCGGCGAAGATTTATTCCCACAATACCCATACCCCTTCTctaatttgt
ttttttgtgaCTCTCATAATATCACGTCCATCATAGTAACATTAAAAAAG
TGATGGAAGTGGGTACGAGATTTTATCTTCATTGTGTCAACCTGATAGAT
TcatatttttaaactttcatcAACGCATATCTATTCCCACCTTTTATCCC
TTCTAATGGACGATAACATCGTTTAATAGATAGAGATCTCGGCCACTTAC
CTGGTGCACAAGGTTTTTTCAACGTATTCATTAAAAATCATAATAAACGT
TGCGGACATTATAATATAGATGTTATAAAAACATTGTATGTCCGCAGACC
TTAAAAGAGAATCATTAGAATCCAAACTTCAACCAATGTCATTTCCCGTT
CTAGATCACGTTGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAA
TTCACGTTATAACACATTCCCATCTGTCATTCATGGTAATGGACCCAGCA
AGTTATATTTGGATCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTT
TCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATAT
TAAGgtaattttttgtcatttttcaagctCAAGTTTTTATACGATTGCGG
GTATCTTATTATTTAATCTTCACGGTTGATTTAGAGTTGAGCTAGAAAAG
TGGAAGTTTATAAAAACTTAAGTTGCAAAGGCCTCGGAGGCGCTCAGTGT
AAGGGTGCTTTTTGTATGTTAAGGCTACTACCATTTAggaaaatacgaaa
atttgGAATGAAATAGGTTTGtttcaagaatttattttaCTCTGCACATA
TGTTTGTTCTCGCATCGGGTTCACTTTTCTCAGGAATAGGGAAAGATTTA
CTAGAGAGATATACATTCGCTTAAATCCCAACTAGCAAGACAGCAACAAA
AGTGACAGTACCTTTTGTCTTTCCCATGACCAAACGACTTGTCAACAATA
AACATTTGTGTATTTATAGTTataaatatttgtattttttaacaGGAAGA
AGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGAACCTACACCTT
TCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGATATCCCAAATCT
AAAATCGATATCTTTCTACATAGTGTGGTA

Coding sequence (CDS) from alignment at scaffold_242:1295432..1304261+

>TCONS_00054259 ID=TCONS_00054259|Name=TCONS_00054259|organism=Clytia hemisphaerica|type=CDS|length=7704bp|location=Sequence derived from alignment at scaffold_242:1295432..1304261+ (Clytia hemisphaerica)
ATGAAGTTTGCTGTCGTGGTATCATTACTAACAGTTTTGGCTTGCGTTTG
TAATGCTCGTAAGCTGAAGATCGTGACGGTGGCAACCGACGAAACAGATG
GATATTTACGTTTCCAAAGATCAGCCAAATTGTATGGTCTAGATGTGGAA
GTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGATATGGCTAATGGTCC
TGGTGGTGGCCATAAAATTAACTTGTTGAGGAGACATTTGAGGaaatatg
aaaatgaagaagatctCATAATGATGTTCACTGATAGTTATGATGTCGTC
TTTACAGAAGGACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAACGC
TACAATTTTGTTTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATTAG
CTAAAGATTATCCGGCACCAGACGTTGAGAATGGATACAGATTTCTCTGC
TCTGGAGGGATAATCGGACCAGCAAATAAATTGTTCGAAGTGATTTCAAT
GGAAGTGATCGAAAATACCAGTGATGACCAATTGTATTACACAAAAATCT
TCCTCGAGAAAAGGGATAAGTACAACATGAAATTGGATAGCTCAAGTGTA
TTGTTTCAAAATCTAAATGGAAACAAAGATCACGTTGAGCTTAACTTCGA
CCTAAAAAACGCACGTGTGACAAATTCACGTTATAACACATTCCCATCTG
TCATTCATGGTAATGGACCCAGCAAGTTATATTTGGATCACCTTGGCAAC
TACATCGCAAACAGTTGGAGTTTTTCTGAGTCTTGCATCAGCTGTAAAGA
AGATACTTTTCTATTAAGTGATATTAAGGAAGAAGACTGGCCAACCATTC
TGATTGGTTTATTTATCCCAGAACCTACACCTTTCGTCCAATCATATCTT
AGACATATTTCCAGCCAAAGATATCCCAAATCTAAAATCGATATCTTTCT
ACATAGTGTGGTAATGAAGTTTGCTGTCGTGGTATCATTACTAACAGTTT
TGGCTTGCGTTTGTAATGCTCGTAAGCTGAAGATCGTGACGGTGGCAACC
GACGAAACAGATGGATATTTACGTTTCCAAAGATCAGCCAAATTGTATGG
TCTAGATGTGGAAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGATA
TGGCTAATGGTCCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAGACAT
TTGAGGaaatatgaaaatgaagaagatctCATAATGATGTTCACTGATAG
TTATGATGTCGTCTTTACAGAAGGACCAGAAGAAATTCTAAAGAAATACG
ATTCTTTCAACGCTACAATTTTGTTTTCATCGGAAGATTTCTGTTGGCCT
GATAAATCATTAGCTAAAGATTATCCGGCACCAGACGTTGAGAATGGATA
CAGATTTCTCTGCTCTGGAGGGATAATCGGACCAGCAAATAAATTGTTCG
AAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGATGACCAATTGTAT
TACACAAAAATCTTCCTCGAGAAAAGGGATAAGTACAACATGAAATTGGA
TAGCTCAAGTGTATTGTTTCAAAATCTAAATGGAAACAAAGATCACGTTG
AGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAATTCACGTTATAAC
ACATTCCCATCTGTCATTCATGGTAATGGACCCAGCAAGTTATATTTGGA
TCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTTTCTGAGTCTTGCA
TCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATATTAAGGAAGAAGAC
TGGCCAACCATTCTGATTGGTTTATTTATCCCAGAACCTACACCTTTCGT
CCAATCATATCTTAGACATATTTCCAGCCAAAGATATCCCAAATCTAAAA
TCGATATCTTTCTACATAGTGTGGTAATGAAGTTTGCTGTCGTGGTATCA
TTACTAACAGTTTTGGCTTGCGTTTGTAATGCTCGTAAGCTGAAGATCGT
GACGGTGGCAACCGACGAAACAGATGGATATTTACGTTTCCAAAGATCAG
CCAAATTGTATGGTCTAGATGTGGAAGTTTTTGGTATGCATGAGGAATGG
TTGGGTGGTGATATGGCTAATGGTCCTGGTGGTGGCCATAAAATTAACTT
GTTGAGGAGACATTTGAGGaaatatgaaaatgaagaagatctCATAATGA
TGTTCACTGATAGTTATGATGTCGTCTTTACAGAAGGACCAGAAGAAATT
CTAAAGAAATACGATTCTTTCAACGCTACAATTTTGTTTTCATCGGAAGA
TTTCTGTTGGCCTGATAAATCATTAGCTAAAGATTATCCGGCACCAGACG
TTGAGAATGGATACAGATTTCTCTGCTCTGGAGGGATAATCGGACCAGCA
AATAAATTGTTCGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGA
TGACCAATTGTATTACACAAAAATCTTCCTCGAGAAAAGGGATAAGTACA
ACATGAAATTGGATAGCTCAAGTGTATTGTTTCAAAATCTAAATGGAAAC
AAAGATCACGTTGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAA
TTCACGTTATAACACATTCCCATCTGTCATTCATGGTAATGGACCCAGCA
AGTTATATTTGGATCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTT
TCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATAT
TAAGGAAGAAGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGAAC
CTACACCTTTCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGATAT
CCCAAATCTAAAATCGATATCTTTCTACATAGTGTGGTAATGAAGTTTGC
TGTCGTGGTATCATTACTAACAGTTTTGGCTTGCGTTTGTAATGCTCGTA
AGCTGAAGATCGTGACGGTGGCAACCGACGAAACAGATGGATATTTACGT
TTCCAAAGATCAGCCAAATTGTATGGTCTAGATGTGGAAGTTTTTGGTAT
GCATGAGGAATGGTTGGGTGGTGATATGGCTAATGGTCCTGGTGGTGGCC
ATAAAATTAACTTGTTGAGGAGACATTTGAGGaaatatgaaaatgaagaa
gatctCATAATGATGTTCACTGATAGTTATGATGTCGTCTTTACAGAAGG
ACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAACGCTACAATTTTGT
TTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATTAGCTAAAGATTAT
CCGGCACCAGACGTTGAGAATGGATACAGATTTCTCTGCTCTGGAGGGAT
AATCGGACCAGCAAATAAATTGTTCGAAGTGATTTCAATGGAAGTGATCG
AAAATACCAGTGATGACCAATTGTATTACACAAAAATCTTCCTCGAGAAA
AGGGATAAGTACAACATGAAATTGGATAGCTCAAGTGTATTGTTTCAAAA
TCTAAATGGAAACAAAGATCACGTTGAGCTTAACTTCGACCTAAAAAACG
CACGTGTGACAAATTCACGTTATAACACATTCCCATCTGTCATTCATGGT
AATGGACCCAGCAAGTTATATTTGGATCACCTTGGCAACTACATCGCAAA
CAGTTGGAGTTTTTCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTTTC
TATTAAGTGATATTAAGGAAGAAGACTGGCCAACCATTCTGATTGGTTTA
TTTATCCCAGAACCTACACCTTTCGTCCAATCATATCTTAGACATATTTC
CAGCCAAAGATATCCCAAATCTAAAATCGATATCTTTCTACATAGTGTGG
TAATGAAGTTTGCTGTCGTGGTATCATTACTAACAGTTTTGGCTTGCGTT
TGTAATGCTCGTAAGCTGAAGATCGTGACGGTGGCAACCGACGAAACAGA
TGGATATTTACGTTTCCAAAGATCAGCCAAATTGTATGGTCTAGATGTGG
AAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGATATGGCTAATGGT
CCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAGACATTTGAGGaaata
tgaaaatgaagaagatctCATAATGATGTTCACTGATAGTTATGATGTCG
TCTTTACAGAAGGACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAAC
GCTACAATTTTGTTTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATT
AGCTAAAGATTATCCGGCACCAGACGTTGAGAATGGATACAGATTTCTCT
GCTCTGGAGGGATAATCGGACCAGCAAATAAATTGTTCGAAGTGATTTCA
ATGGAAGTGATCGAAAATACCAGTGATGACCAATTGTATTACACAAAAAT
CTTCCTCGAGAAAAGGGATAAGTACAACATGAAATTGGATAGCTCAAGTG
TATTGTTTCAAAATCTAAATGGAAACAAAGATCACGTTGAGCTTAACTTC
GACCTAAAAAACGCACGTGTGACAAATTCACGTTATAACACATTCCCATC
TGTCATTCATGGTAATGGACCCAGCAAGTTATATTTGGATCACCTTGGCA
ACTACATCGCAAACAGTTGGAGTTTTTCTGAGTCTTGCATCAGCTGTAAA
GAAGATACTTTTCTATTAAGTGATATTAAGGAAGAAGACTGGCCAACCAT
TCTGATTGGTTTATTTATCCCAGAACCTACACCTTTCGTCCAATCATATC
TTAGACATATTTCCAGCCAAAGATATCCCAAATCTAAAATCGATATCTTT
CTACATAGTGTGGTAATGAAGTTTGCTGTCGTGGTATCATTACTAACAGT
TTTGGCTTGCGTTTGTAATGCTCGTAAGCTGAAGATCGTGACGGTGGCAA
CCGACGAAACAGATGGATATTTACGTTTCCAAAGATCAGCCAAATTGTAT
GGTCTAGATGTGGAAGTTTTTGGTATGCATGAGGAATGGTTGGGTGGTGA
TATGGCTAATGGTCCTGGTGGTGGCCATAAAATTAACTTGTTGAGGAGAC
ATTTGAGGaaatatgaaaatgaagaagatctCATAATGATGTTCACTGAT
AGTTATGATGTCGTCTTTACAGAAGGACCAGAAGAAATTCTAAAGAAATA
CGATTCTTTCAACGCTACAATTTTGTTTTCATCGGAAGATTTCTGTTGGC
CTGATAAATCATTAGCTAAAGATTATCCGGCACCAGACGTTGAGAATGGA
TACAGATTTCTCTGCTCTGGAGGGATAATCGGACCAGCAAATAAATTGTT
CGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGTGATGACCAATTGT
ATTACACAAAAATCTTCCTCGAGAAAAGGGATAAGTACAACATGAAATTG
GATAGCTCAAGTGTATTGTTTCAAAATCTAAATGGAAACAAAGATCACGT
TGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACAAATTCACGTTATA
ACACATTCCCATCTGTCATTCATGGTAATGGACCCAGCAAGTTATATTTG
GATCACCTTGGCAACTACATCGCAAACAGTTGGAGTTTTTCTGAGTCTTG
CATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGATATTAAGGAAGAAG
ACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGAACCTACACCTTTC
GTCCAATCATATCTTAGACATATTTCCAGCCAAAGATATCCCAAATCTAA
AATCGATATCTTTCTACATAGTGTGGTAATGAAGTTTGCTGTCGTGGTAT
CATTACTAACAGTTTTGGCTTGCGTTTGTAATGCTCGTAAGCTGAAGATC
GTGACGGTGGCAACCGACGAAACAGATGGATATTTACGTTTCCAAAGATC
AGCCAAATTGTATGGTCTAGATGTGGAAGTTTTTGGTATGCATGAGGAAT
GGTTGGGTGGTGATATGGCTAATGGTCCTGGTGGTGGCCATAAAATTAAC
TTGTTGAGGAGACATTTGAGGaaatatgaaaatgaagaagatctCATAAT
GATGTTCACTGATAGTTATGATGTCGTCTTTACAGAAGGACCAGAAGAAA
TTCTAAAGAAATACGATTCTTTCAACGCTACAATTTTGTTTTCATCGGAA
GATTTCTGTTGGCCTGATAAATCATTAGCTAAAGATTATCCGGCACCAGA
CGTTGAGAATGGATACAGATTTCTCTGCTCTGGAGGGATAATCGGACCAG
CAAATAAATTGTTCGAAGTGATTTCAATGGAAGTGATCGAAAATACCAGT
GATGACCAATTGTATTACACAAAAATCTTCCTCGAGAAAAGGGATAAGTA
CAACATGAAATTGGATAGCTCAAGTGTATTGTTTCAAAATCTAAATGGAA
ACAAAGATCACGTTGAGCTTAACTTCGACCTAAAAAACGCACGTGTGACA
AATTCACGTTATAACACATTCCCATCTGTCATTCATGGTAATGGACCCAG
CAAGTTATATTTGGATCACCTTGGCAACTACATCGCAAACAGTTGGAGTT
TTTCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTTTCTATTAAGTGAT
ATTAAGGAAGAAGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAGA
ACCTACACCTTTCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGAT
ATCCCAAATCTAAAATCGATATCTTTCTACATAGTGTGGTAATGAAGTTT
GCTGTCGTGGTATCATTACTAACAGTTTTGGCTTGCGTTTGTAATGCTCG
TAAGCTGAAGATCGTGACGGTGGCAACCGACGAAACAGATGGATATTTAC
GTTTCCAAAGATCAGCCAAATTGTATGGTCTAGATGTGGAAGTTTTTGGT
ATGCATGAGGAATGGTTGGGTGGTGATATGGCTAATGGTCCTGGTGGTGG
CCATAAAATTAACTTGTTGAGGAGACATTTGAGGaaatatgaaaatgaag
aagatctCATAATGATGTTCACTGATAGTTATGATGTCGTCTTTACAGAA
GGACCAGAAGAAATTCTAAAGAAATACGATTCTTTCAACGCTACAATTTT
GTTTTCATCGGAAGATTTCTGTTGGCCTGATAAATCATTAGCTAAAGATT
ATCCGGCACCAGACGTTGAGAATGGATACAGATTTCTCTGCTCTGGAGGG
ATAATCGGACCAGCAAATAAATTGTTCGAAGTGATTTCAATGGAAGTGAT
CGAAAATACCAGTGATGACCAATTGTATTACACAAAAATCTTCCTCGAGA
AAAGGGATAAGTACAACATGAAATTGGATAGCTCAAGTGTATTGTTTCAA
AATCTAAATGGAAACAAAGATCACGTTGAGCTTAACTTCGACCTAAAAAA
CGCACGTGTGACAAATTCACGTTATAACACATTCCCATCTGTCATTCATG
GTAATGGACCCAGCAAGTTATATTTGGATCACCTTGGCAACTACATCGCA
AACAGTTGGAGTTTTTCTGAGTCTTGCATCAGCTGTAAAGAAGATACTTT
TCTATTAAGTGATATTAAGGAAGAAGACTGGCCAACCATTCTGATTGGTT
TATTTATCCCAGAACCTACACCTTTCGTCCAATCATATCTTAGACATATT
TCCAGCCAAAGATATCCCAAATCTAAAATCGATATCTTTCTACATAGTGT
GGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034226XLOC_034226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054259-exon-scaffold_242-1491911889:1295432..1295568TCONS_00054259-exon-scaffold_242-1491911889:1295432..1295568Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1295432..1295568TCONS_00054259-exon-scaffold_242-1510915933:1295432..1295568Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1295432..1295568TCONS_00054259-exon-scaffold_242-1575043694:1295432..1295568Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1298808..1298859TCONS_00054259-exon-scaffold_242-1491911889:1298808..1298859Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1298808..1298859TCONS_00054259-exon-scaffold_242-1510915933:1298808..1298859Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1298808..1298859TCONS_00054259-exon-scaffold_242-1575043694:1298808..1298859Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1299508..1299590TCONS_00054259-exon-scaffold_242-1491911889:1299508..1299590Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1299508..1299590TCONS_00054259-exon-scaffold_242-1510915933:1299508..1299590Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1299508..1299590TCONS_00054259-exon-scaffold_242-1575043694:1299508..1299590Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1300792..1301023TCONS_00054259-exon-scaffold_242-1491911889:1300792..1301023Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1300792..1301023TCONS_00054259-exon-scaffold_242-1510915933:1300792..1301023Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1300792..1301023TCONS_00054259-exon-scaffold_242-1575043694:1300792..1301023Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1301417..1301531TCONS_00054259-exon-scaffold_242-1491911889:1301417..1301531Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1301417..1301531TCONS_00054259-exon-scaffold_242-1510915933:1301417..1301531Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1301417..1301531TCONS_00054259-exon-scaffold_242-1575043694:1301417..1301531Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1302122..1302176TCONS_00054259-exon-scaffold_242-1491911889:1302122..1302176Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1302122..1302176TCONS_00054259-exon-scaffold_242-1510915933:1302122..1302176Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1302122..1302176TCONS_00054259-exon-scaffold_242-1575043694:1302122..1302176Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1302362..1302468TCONS_00054259-exon-scaffold_242-1491911889:1302362..1302468Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1302362..1302468TCONS_00054259-exon-scaffold_242-1510915933:1302362..1302468Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1302362..1302468TCONS_00054259-exon-scaffold_242-1575043694:1302362..1302468Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1302831..1302894TCONS_00054259-exon-scaffold_242-1491911889:1302831..1302894Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1302831..1302894TCONS_00054259-exon-scaffold_242-1510915933:1302831..1302894Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1302831..1302894TCONS_00054259-exon-scaffold_242-1575043694:1302831..1302894Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1303486..1303685TCONS_00054259-exon-scaffold_242-1491911889:1303486..1303685Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1303486..1303685TCONS_00054259-exon-scaffold_242-1510915933:1303486..1303685Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1303486..1303685TCONS_00054259-exon-scaffold_242-1575043694:1303486..1303685Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1491911889:1304127..1304261TCONS_00054259-exon-scaffold_242-1491911889:1304127..1304261Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1510915933:1304127..1304261TCONS_00054259-exon-scaffold_242-1510915933:1304127..1304261Clytia hemisphaericaexon
TCONS_00054259-exon-scaffold_242-1575043694:1304127..1304261TCONS_00054259-exon-scaffold_242-1575043694:1304127..1304261Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054259-proteinTCONS_00054259-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1295432..1304261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182687	0.178148	0.0827389	0.161894	48.0408	43.6471	19.4474	20.8451	10.1297	17.9246	17.8053	5.15873	34.2142	33.6895	18.2782	21.1293	60.9734	95.7256	36.3931	47.6339	36.2095	34.6342	14.1598	24.1851	35.1095	36.761	3.45689	4.11704	79.3634	96.0223
Blast
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BLAST of TCONS_00054259 vs. Swiss-Prot (Human)
Match: PLOD3 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Homo sapiens GN=PLOD3 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.702e-83
Identity = 130/305 (42.62%), Postives = 191/305 (62.62%), Query Frame = 2 
Query:  266 CNARKLKIVTVATDETDGYLRFQRSAKLYGLDVEVFGMHEEWLGGDMANGPGGGHKINLLRRHLRKYENEEDLIMMFTDSYDVVFTEGPEEILKKYDSFNATILFSSEDFCWPDKSLAKDYPAPDVENGYRFLCSGGIIGPANKLFEVISMEVIENTSDDQLYYTKIFLEK--RDKYNMKLDSSSVLFQNLNGNKDHVELNFDLKNARVTNSRYNTFPSVIHGNGPSKLYLDHLGNYIANSWSFSESCISCKEDTFLLSDIKEEDWPTILIGLFIPEPTPFVQSYLRHISSQRYPKSKIDIFLHS 1174
             N  KL ++TVAT ET+GYLRF RSA+ +   V   G+ EEW GGD+A   GGG K+  L++ + KY + ED+I+MF DSYDV+    P E+LKK+    + +LFS+E FCWP+  LA+ Y  P+V  G RFL SGG IG A  + +++     ++  DDQL+YT+++L+   R+K ++ LD  S +FQNLNG  D V L FD    R+ N  Y+T P V+HGNGP+KL L++LGNY+ N W+    C  C +D   L   +    P + + +F+ +PTPF+  +L+ +    YP  ++ +FLH+
Sbjct:   34 VNPEKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQY--PEVGTGKRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPEGGCGFCNQDRRTLPGGQPP--PRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHN 334
The following BLAST results are available for this feature:
BLAST of TCONS_00054259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLOD32.702e-8342.62Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ... [more]
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