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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054484 ID=TCONS_00054484|Name=TCONS_00054484|organism=Clytia hemisphaerica|type=transcript|length=1449bp
AAAAAAGCTACGCGTAATTAGTTAAACCATTCCAGAGAGAAATCAATATT
TCAAATTGAACCTTCCTAGCAACCTAAAGTACAGATAGTGCTTAGTGGAT
AAATTACAAGtctgaaattgatcaaaatatATCTATTCAAGTCCATATCG
CACGTGAAGGACAAGATGTAAAGGGCGAAGAAATCATAAATAAAGACATC
TCTTTTTTGGCTACCGCAAAAGAATCCAAGCTAGATCTATTCATTTATCA
CTTTATCCAATCATCTGAAAATCCGTATAAGCTAAAATACCACCCCGGAA
TACCGCCACGAGTAAAACATCATACCAAAGGAACTTCGTGAACAGAACGC
ACAGTGCAGAATATGAGAGAAAAACCTCGAAGAAGATAAAATAGAGCTGG
AACGCTAAAACAAACATTGTTCAACCTTTTTAAACAAGTTGCAATTCGTT
CAGCTCGATATATTTAAGGTTACACATGGTTCTGACTGTAAGGTAAAATT
CATCCGTCCAATTTTTCTCCACATAGCAgacaaaaagtcgaaaaaataCG
TGATTGTAAGAATGGTGTATCCACCTTTCATCGACTCATCAAAAGGTGTA
AAGTCCAAAGGACAGTGAAAATTAGAGATAGAGGAGTGTTAATAAAGATA
GAGAAAACTATCAACCAAACTTTGCCCCCTTTTATGAAAACATCACGAAA
AACTATTTATGATCACGTGACATGCCAAAGGAAAACACTCGAGTGCAAAA
TGGACGTGATAAATGAGCTGACCGCAAAAAACACCAGATTGTCAAGagag
aatttttttgtgaatgaCAAGAAGGGGATCTCTTGAAGGTATGAGGGTCA
ACAGTACAGTTAAGTTTGATGGTGAACATGCCACTTGAAAGCAAAGATgt
gaaataaaagtaaaatcaaatcaGAACAAAAATTCATGCAATTTGGGACA
AACCATTATGTAACAAACCtccaaattgaaaataaattgccCTAAAAATC
GCAAGGCAATAATGCAGTTAAATTGTCTTGTTAGTAACTTTAAGAAAGAA
GTTAATAAATCCCGAGTCTTTTCTGATACTACTCCCTTCTTTCACATCGT
CACACTCATCTCTCGAGCGCCTCGCTGAAAAGCCTCGGTCTCGATGAAAA
GAAAGAAGGCATTTTTTGGGTGATTTTcctcaaaatcattttcatttggG
AGGTTGTTACATATATGCATGATTTTTTGGCGTCAGTGTAAATCATAAGA
TCCTTTAATTTCTCCTTGATATATCCATACAACCCTTTGGCAAGAAAcaa
caataaacaaaacaaactgCGTATAAATGGTAGTGGCAACGAGTTCAGGG
TTTTCTATTAACTTAATCAGATCTTCCCAGGGGGTAGAAGGTCGGAGAAA
TATTTCGCCAATGAGCGAAACTATTAATCGAGGTAATGTTAAAGACAAC Run BLAST on NCBI transcript from alignment at scaffold_242:1235974..1237422 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054484 ID=TCONS_00054484|Name=TCONS_00054484|organism=Clytia hemisphaerica|type=transcript|length=1449bp|location=Sequence derived from alignment at scaffold_242:1235974..1237422 (Clytia hemisphaerica)
GTTGTCTTTAACATTACCTCGATTAATAGTTTCGCTCATTGGCGAAATAT
TTCTCCGACCTTCTACCCCCTGGGAAGATCTGATTAAGTTAATAGAAAAC
CCTGAACTCGTTGCCACTACCATTTATACGcagtttgttttgtttattgt
tgTTTCTTGCCAAAGGGTTGTATGGATATATCAAGGAGAAATTAAAGGAT
CTTATGATTTACACTGACGCCAAAAAATCATGCATATATGTAACAACCTC
ccaaatgaaaatgattttgaggAAAATCACCCAAAAAATGCCTTCTTTCT
TTTCATCGAGACCGAGGCTTTTCAGCGAGGCGCTCGAGAGATGAGTGTGA
CGATGTGAAAGAAGGGAGTAGTATCAGAAAAGACTCGGGATTTATTAACT
TCTTTCTTAAAGTTACTAACAAGACAATTTAACTGCATTATTGCCTTGCG
ATTTTTAGggcaatttattttcaatttggaGGTTTGTTACATAATGGTTT
GTCCCAAATTGCATGAATTTTTGTTCtgatttgattttacttttatttca
cATCTTTGCTTTCAAGTGGCATGTTCACCATCAAACTTAACTGTACTGTT
GACCCTCATACCTTCAAGAGATCCCCTTCTTGtcattcacaaaaaaattc
tctCTTGACAATCTGGTGTTTTTTGCGGTCAGCTCATTTATCACGTCCAT
TTTGCACTCGAGTGTTTTCCTTTGGCATGTCACGTGATCATAAATAGTTT
TTCGTGATGTTTTCATAAAAGGGGGCAAAGTTTGGTTGATAGTTTTCTCT
ATCTTTATTAACACTCCTCTATCTCTAATTTTCACTGTCCTTTGGACTTT
ACACCTTTTGATGAGTCGATGAAAGGTGGATACACCATTCTTACAATCAC
GtattttttcgactttttgtcTGCTATGTGGAGAAAAATTGGACGGATGA
ATTTTACCTTACAGTCAGAACCATGTGTAACCTTAAATATATCGAGCTGA
ACGAATTGCAACTTGTTTAAAAAGGTTGAACAATGTTTGTTTTAGCGTTC
CAGCTCTATTTTATCTTCTTCGAGGTTTTTCTCTCATATTCTGCACTGTG
CGTTCTGTTCACGAAGTTCCTTTGGTATGATGTTTTACTCGTGGCGGTAT
TCCGGGGTGGTATTTTAGCTTATACGGATTTTCAGATGATTGGATAAAGT
GATAAATGAATAGATCTAGCTTGGATTCTTTTGCGGTAGCCAAAAAAGAG
ATGTCTTTATTTATGATTTCTTCGCCCTTTACATCTTGTCCTTCACGTGC
GATATGGACTTGAATAGATatattttgatcaatttcagaCTTGTAATTTA
TCCACTAAGCACTATCTGTACTTTAGGTTGCTAGGAAGGTTCAATTTGAA
ATATTGATTTCTCTCTGGAATGGTTTAACTAATTACGCGTAGCTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054484-exon-scaffold_242-1491911889:1235974..1237422 | TCONS_00054484-exon-scaffold_242-1491911889:1235974..1237422 | Clytia hemisphaerica | exon |
| TCONS_00054484-exon-scaffold_242-1510915933:1235974..1237422 | TCONS_00054484-exon-scaffold_242-1510915933:1235974..1237422 | Clytia hemisphaerica | exon |
| TCONS_00054484-exon-scaffold_242-1575043694:1235974..1237422 | TCONS_00054484-exon-scaffold_242-1575043694:1235974..1237422 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1235974..1237422 . |
Blast
The following BLAST results are available for this feature:
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