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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054360 ID=TCONS_00054360|Name=TCONS_00054360|organism=Clytia hemisphaerica|type=transcript|length=1674bpRun BLAST on NCBI protein sequence of TCONS_00054360-protein >TCONS_00054360-protein ID=TCONS_00054360-protein|Name=TCONS_00054360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp MDPSNPQIITHVQKSLNYTLFDAKFVPRSAKFVCVGSKANGSGVIQMYELRun BLAST on NCBI transcript from alignment at scaffold_242:898853..915875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054360 ID=TCONS_00054360|Name=TCONS_00054360|organism=Clytia hemisphaerica|type=transcript|length=17023bp|location=Sequence derived from alignment at scaffold_242:898853..915875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:898853..915875- >TCONS_00054360 ID=TCONS_00054360|Name=TCONS_00054360|organism=Clytia hemisphaerica|type=CDS|length=9747bp|location=Sequence derived from alignment at scaffold_242:898853..915875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054360 vs. Swiss-Prot (Human)
Match: WDR92 (WD repeat-containing protein 92 OS=Homo sapiens GN=WDR92 PE=1 SV=1) HSP 1 Score: 481.485 bits (1238), Expect = 1.850e-166 Identity = 233/343 (67.93%), Postives = 286/343 (83.38%), Query Frame = 1
Query: 73 PQIITHVQKSLNYTLFDAKFVPRSAKFVCVGSKANGSGVIQMYELTHNEMKGNVNLLKDLEKSKSFKCCTFGASSLKTRFLATGDFDGKLAIWDLEKPSLPVYSTKAHKEXXXXXXXXXXXXXXXXAPELVTCSRDGSVKVWDPRQKDIPVANMEASNQDMKRDCWCVAFGHSYNESERIVCAGYDNGDIKMFDLRNMSLRWETHVKNGVCGLEFDRKDIVMNKLVATTLESKLHVFDLRTHHPNKGYSSITQKAHDSTIWSVKHLPQNRDIFMTTGGVGSLNLWKYSYPSKRTEVDDEGFEVGVMGSLTKLQNVTLATQPIASFDWSADKEGLGVCTAFDQT 1101
PQII H+QK NYT+FD K+VP SAKFV +G+ A G+GVIQ+YE+ H ++K LL+++EK+K KC TFGA+SL+ R+LATGDF G L IW+LE P +PVYS K HKEIIN IDGIGGLGIGEGAPE+VT SRDG+VKVWDPRQKD PVANME + KRDCW VAFG++YN+ ER+VCAGYDNGDIK+FDLRNM+LRWET++KNGVC LEFDRKDI MNKLVAT+LE K HVFD+RT HP KG++S+++KAH ST+W V+HLPQNR++F+T GG G L+LWKY YP +R++ D EG E+GV GS++ LQNVTL+TQPI+S DWS DK GL VC++FDQT
Sbjct: 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 The following BLAST results are available for this feature:
BLAST of TCONS_00054360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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