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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054334 ID=TCONS_00054334|Name=TCONS_00054334|organism=Clytia hemisphaerica|type=transcript|length=4226bpRun BLAST on NCBI protein sequence of TCONS_00054334-protein >TCONS_00054334-protein ID=TCONS_00054334-protein|Name=TCONS_00054334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp MSSRKRNLVGSDDSDDSSDDSDFGEGLKSISKKAKVSPKQKPQEDSSDSSRun BLAST on NCBI transcript from alignment at scaffold_242:387365..413646- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054334 ID=TCONS_00054334|Name=TCONS_00054334|organism=Clytia hemisphaerica|type=transcript|length=26282bp|location=Sequence derived from alignment at scaffold_242:387365..413646- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:387365..413646- >TCONS_00054334 ID=TCONS_00054334|Name=TCONS_00054334|organism=Clytia hemisphaerica|type=CDS|length=30870bp|location=Sequence derived from alignment at scaffold_242:387365..413646- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054334 vs. Swiss-Prot (Human)
Match: RTF1 (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4) HSP 1 Score: 318.161 bits (814), Expect = 5.731e-93 Identity = 169/369 (45.80%), Postives = 233/369 (63.14%), Query Frame = 1
Query: 1234 EELEEVRLSRHKLEQWVHTPFFGQVLTGCFVRIGIGNHEGRAVYRVAEIIDVVETPKIYTLGKTRTNKGVKIRHGMQERTFRMEYVSNQGFTDSEFQKWKEEMSMRELPLPNXXXXXXXXXXXXXXXTYTYKEDDIEAIVKEKDKFRKNPHNYAVKKNRLLREKEVAEQTSDFDRLRKVNEELDALEERAEQLDKKRSGALSNVSYINERNRKKNVYDVEKAAIEESKLNKKQKDDPFTRRKTLPKMISKD----------------------DNSPSEGSSKQSQDS-VDGKSSKNPSQXXXXXXXXXXXXXXXXADLFSAHDFDVQIDVDIPGSRNISLTPKPLMAARELGPPRRSLNLDEYKRRKG 2271
EEL VRLSRHKLE+W H PFF + +TGCFVRIGIGNH + VYRVAEI VVET K+Y LG TRTNKG+++RHG +R FR+E+VSNQ FT+SEF KWKE M + LP + I K+ I+ + Y + + DIE IVKEK++FRK P NYA+KK +LL+EK +AE D D+ +++ ++L+ LEERAE LD++R+ +S +SYIN+RNR+ N+ + EKA + ES K Q+ DPFTRR+ P ++S ++P E S Q +D ++ KS+ + S+ DLF HDFDV+ID+ +P S + +L + G PRRSLNL++YK+R+G
Sbjct: 357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSE-----------------DLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRG 708 The following BLAST results are available for this feature:
BLAST of TCONS_00054334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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