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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054123 ID=TCONS_00054123|Name=TCONS_00054123|organism=Clytia hemisphaerica|type=transcript|length=4514bpRun BLAST on NCBI transcript from alignment at scaffold_24:241610..264012- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054123 ID=TCONS_00054123|Name=TCONS_00054123|organism=Clytia hemisphaerica|type=transcript|length=22403bp|location=Sequence derived from alignment at scaffold_24:241610..264012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054123 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 539.265 bits (1388), Expect = 6.016e-159 Identity = 465/1575 (29.52%), Postives = 744/1575 (47.24%), Query Frame = 1
Query: 4 LEGALE--DSAGTLAVTNLGDCHGLIWYVTFKSIGGDLPQLEVV-SKSEDLQTDVVVKTTQDGGIVHGPFTGDLLQQKMDKPQVTVDLFGLMSTCSNGSCAYNYTTEKTLNITAITPQ--SAAPGEQITLTSQDFXXXXXXXXXXXNIDCSIDSTSGENVVCTIGEETRGGQQDVIAHVQGMGNAYPI-----KFEVAIVITSISPSTLGTNGGVDIEINGKGFGKDGQELEIQLKMGSDRHDCNIHCYLKDCGPTRTYCRTPVLVDGSAELEASINGSTYTYPHVITVGIGSDPIVNTLSFQKASVKGGQKLSIAGSSF----SEDSKVNVDTKECTIVTASTSHIECTLPENEPGVKKCAV-VRSDGFSSTEFDM----EYVLSLTSVSPNKGSYAGGSILTITGEGFGTVDSDVEVRVGQKKCEILTISDTTITCRQPPVTRTVQVGNSGQHETFGIGYKWSKENINILTGDTVEWSWGYSP-ESGVTSGIYP-SDPDDILSYDASNFYC--QPSQSGTCSKRFDFEGDYGFTSGTL-KGYGFSFGGNIVVIERTSNVVEDILVLVKG----------------------------------YESTNTLPFTYRDDRTPKITSIEQDQSTGLMHRLPSQRIKINGVGFSSTRSKNNVKFGSHLCDVKSASATSLECDMDLTSEPPMDILLPVSLLVEGKGDALVRIRSDLNYSVVFQHEVSSISPLRGSEQGRTKLTVGGHGL--NGHLVEVIIGVSVCETIESTYSQLTCWSPADASGSADIEVQDKGYQLDAQKTETPFTFVYDSTLTPIAKQETIRGNVMQDVGNTLRIGVEG---GSTTQSYQFHFNDIVIQGTEVVTKEDDVFTYSDAFLLPHGGYSIRLYIEGKGYTQFTHNGKTQDFYPGAITGKISSVTPPLGSKYGGTEITINGYGFRGEGGSYPNRQPGSSDVVIAQSTVTIDGKPCRITSKTMTQIKCITPPSVDEVCPNCMTGPIEVS--VDDQIKSTTKFEYSDDESPEISSVSPTTGKNGDTITLTG-NFPHST-GVSVQVGDAECQSVIVESSTKITCTLQHHTAGNTTLKVHIDGSGDSNS-VPFVCXXXXXXXXXXXXXXXXXIEVEISGTGYG-EDTMVTICDVDCPVKKDEVTVTNIKCLSPAQEGPIDVAITCAIKISSGEQEHILSAQYLYDPSKTSVVTDVSPSRXXXXXXXXXXXXXXXXXXSPVKPEVTIDGIECQVKSVSSNSIICTTQQSNVTSLNADVIIQFENSGRAVVSSQVTFQVVDVWSSKFTWGNNDPPKKGDFVVIEKGQTMLLDQDTEILSFLLIKGGTFIFDRKDIHLQSEFILITENGRFEIGTEDDPFQQEAKITIHGHVRKPELPVYGTKSIALRTGYLGLHGRHIPHTWTRLANTVDAGSTEIELLDPATGWRVNDQIVLAST--SKSIRENEVVKIISISSDKTTLVVEPALRFKHISISQTIT-GRMIETRGEVGLLTRNVRIQGSEHDEWNGTITACPAEFDPDQFATQTCFDGRFGQERESDEFGVQIMIHSDQKDQGLAVAHFNHIEI 4512
L+ AL+ + G ++VT G C G W + ++S G L++ S + ++ V ++GG+ GDLL+ +PQV V + G+ + CS G C + + + T + AI+P S G +T+ F + V+VG + CS+ S + + C I + G V + +G A + F I+ I P + GG + ++G GF ++ + L +G++ C + + R CRTP +G+ ++ + NG T + PI+ S + ++ G L+I G +F +++ V V K C I+ + + I C LP+ PG V VR+ GF+ST + +YVL +TS+ P +GS GG+ +TI G GF T+ ++ V +G C + + S+ I C ++ N+G+ G+GY WS +N+ GDTV W W P G+ I+ S P ++ YD F Q S SG+ S +F G + ++SG + + + G I V+ + + L + + +++ L F +P I++I STG ++ L I I G GFS+ N V GS+ C V+ +S S+ C +D + + I V+L V G A+ + ++ + V + + P GS G T +T+ G G + V+V++G C+ + Y+ + C + A D+++ G Q TF Y ++TP I G V ++++ +EG G+ + + + EV E+++ LP G +S+ + + KG G P ++S++P GS GGT + I G GF YP +TVTI +PC+I S ++ C TP TG ++V V+ F Y+ +++P + + P+ G G I +TG NF +SV + + +C +V + + + + C + H G + +H G + S V F L+ FGGG + ++GTG+ +++++ +C +C + + T + C P+ G C + + +G+ + Y S T ++T VSP R T GG +T G+GF + +TI +C V+ + IIC T ++ A V + G A + + F VD WSS F+WG PP++G VVI KGQT+LLDQ T IL LLI+GGT IFD DI LQ+E ILIT+ G +IGTE PFQ +A IT+HGH+R PELPVYG K++A+R G L LHG +P TWTRLA+T AG I +L A W+ D IV+AST S ENE + I S+S+D + + L + H+ I+ T+ G + E R EVG+LTRN+ I+GS++ EWN I ACP FD +FATQTC G+FG+E SD+FG +M H+ + ++E+
Sbjct: 959 LQFALQSLEGMGRISVTREGTCAGYAWNIKWRSTCGKQNLLQINDSNIIGEKANMTVTRIKEGGLFRQHVLGDLLRTPSQQPQVEVYVNGIPAKCS-GDCGFTWDSNITPLVLAISPSQGSYEEGTILTIVGSGFSPSSAVTVSVGPVGCSLLSVDEKELKCQILNGS-AGHAPVAVSMADVGLAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNENSKVL-----VGNET------CNVIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARDAFSYNCLQTPIITDFSPKVRTILGEVNLTIKGYNFGNELTQNMAVYVGGKTCQILHWNFTDIRCLLPKLSPGKHDIYVEVRNWGFASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGFSTIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWSPPVLNVSVGDTVAWHWQTHPFLRGIGYRIFSVSSPGSVI-YDGKGFTSGRQKSTSGSFSYQFTSPGIHYYSSGYVDEAHSIFLQGVINVLPAETRHIPLHLFVGRSEATYAYGGPENLHLGSSVAGCLATEPLCSLNNTRVKNSKRLLFEVSSCFSPSISNITP--STGTVNEL----ITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSVTIKGSGFAVSSAGVKVLMGHFPCKVLSVNYTAIECETSPAAQQLVDVDLLIHGVPAQCQGN---CTFSYLESITPY-----ITGVFPNSVIGSVKVLIEGEGLGTVLEDIAVFIGNQQFRAIEV--NENNITALVTP--LPVGHHSVSVVVGSKGLAL----GNLTVSSP-----PVASLSPTSGSIGGGTTLVITGNGF------YP-----------GNTTVTIGDEPCQIISINPNEVYCRTPAGT--------TGMVDVKIFVNTIAYPPLLFTYALEDTPFLRGIIPSRGPPGTEIEITGSNFGFEILEISVMINNIQC-NVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAIDRLRSDYTTLLCEIPSNNG-TGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYSNKTHIICMTDAHTLSGW-APVCVHIRGVGMAKLDN-ADFLYVDAWSSNFSWGGKSPPEEGSLVVITKGQTILLDQSTPILKMLLIQGGTLIFDEADIELQAENILITDGGVLQIGTETSPFQHKAVITLHGHLRSPELPVYGAKTLAVREGILDLHGVPVPVTWTRLAHTAKAGE-RILILQEAVTWKPGDNIVIASTGHRHSQGENEKMTIASVSADGINITLSNPLNYTHLGITVTLPDGTLFEARAEVGILTRNILIRGSDNVEWNNKIPACPDGFDTGEFATQTCLQGKFGEEIGSDQFGGCVMFHAPVPGANMVTGRIEYVEV 2462 HSP 2 Score: 92.0485 bits (227), Expect = 2.291e-18 Identity = 72/247 (29.15%), Postives = 122/247 (49.39%), Query Frame = 1
Query: 3664 DVWSSKFTW-----GNNDPPKKGDFVVIEKGQTMLLDQDTEILSFLLIKGGTFIFDR----------KDIHLQSEFILITENGRFEIGTEDDPFQQEAKITIHG-HVRK----PELPVYGTKSIALRTGYLGLHGRHIPHTW--TRLANTVDAGSTEIELLDPATGWRVNDQIVLASTSKSIRENEVVKIISISSDKTTLVVEPALRFKHISISQTI--TGRMIETRGEVGLLTRNVRIQGSEHDEW 4332
++WS+ W N P G V+I +G ++ D D + L+I G + D+ +++ L + +I + + GR G ED+PF+ + KI + G H + PE P G K + + G L LHG IPH+ T+L+ T AGS + L+D A W+ ++IV+ +TS + E I+ I D L++ +L + H + + TG +VG+L+RN++I G ++ W
Sbjct: 3030 NLWSNDSFWQSSRENNYTVPHPGANVIIPEGTWIVADIDMPSMERLIIWGVLELEDKYNVGAAESSYREVVLNATYISL-QGGRLIGGWEDNPFKGDLKIVLRGNHTTQDWALPEGPNQGAKVLGV-FGELDLHG--IPHSIYKTKLSETAFAGSKVLSLMD-AVDWQEGEEIVITTTSYDFHQTETRSIVKILHDHKILILNDSLSYTHFAEKYHVPGTGESYTLAADVGILSRNIKIVGEDYPGW 3271 The following BLAST results are available for this feature:
BLAST of TCONS_00054123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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