TCONS_00054121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054121
Unique NameTCONS_00054121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054121 ID=TCONS_00054121|Name=TCONS_00054121|organism=Clytia hemisphaerica|type=transcript|length=138bp
ATACACGTGTCAAGATATAACCTATAAATTCTTTATCATCGAGAGTTTGG
ACGCTGATACGGAAACTAGAAGATTGTCTCCAATAGCACTGGCAAGTCAA
GGTTTCATTGATCTGGTGAACGGTCCACAGGATCATGG
Run BLAST on NCBI

transcript from alignment at scaffold_24:215096..215574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054121 ID=TCONS_00054121|Name=TCONS_00054121|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_24:215096..215574- (Clytia hemisphaerica)
ATACACGTGTCAAGATATAACCTATAAATTCTTTATCATCGAGAGTTTGG
ACGCTGATACGGAAACTAGAAGGTATACATATCCGCTTTCAATGAGAGAG
CAAAAGTTTGACCAATATTTTGAGGGGTGCTTAATTTTAGCTCAACAACT
ATTCGACTGGTGACAGGACTTTCATTCTACACACTAACTAACGGGCAGTT
TTATTTTGTACAAGAGAAAGTGATGATAGATTGCTCATGAATGCTGGAAA
ACAGCATCGCTGAATCATTGACTGTCTGATTTTTACTCATTTGTGTTGTT
ACATTTCACAACCTTATTAAGTGGCATATTTCCAAGAATTTCATAAATCA
TCAAATCTTCTATAATCGACAAAGTTGTCTTATCTTAATTGATTCAATAA
CGTCTTTTTTCAGATTGTCTCCAATAGCACTGGCAAGTCAAGGTTTCATT
GATCTGGTGAACGGTCCACAGGATCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034149XLOC_034149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054121-exon-scaffold_24-1575043694:215503..215574TCONS_00054121-exon-scaffold_24-1575043694:215503..215574Clytia hemisphaericaexon
TCONS_00054121-exon-scaffold_24-1575043694:215096..215161TCONS_00054121-exon-scaffold_24-1575043694:215096..215161Clytia hemisphaericaexon
TCONS_00054121-exon-scaffold_24-1510915933:215503..215574TCONS_00054121-exon-scaffold_24-1510915933:215503..215574Clytia hemisphaericaexon
TCONS_00054121-exon-scaffold_24-1510915933:215096..215161TCONS_00054121-exon-scaffold_24-1510915933:215096..215161Clytia hemisphaericaexon
TCONS_00054121-exon-scaffold_24-1491911889:215503..215574TCONS_00054121-exon-scaffold_24-1491911889:215503..215574Clytia hemisphaericaexon
TCONS_00054121-exon-scaffold_24-1491911889:215096..215161TCONS_00054121-exon-scaffold_24-1491911889:215096..215161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:215096..215574 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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