TCONS_00053991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053991
Unique NameTCONS_00053991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053991 ID=TCONS_00053991|Name=TCONS_00053991|organism=Clytia hemisphaerica|type=transcript|length=568bp
AGGAGCGCCTTGTTGCGATGTAGGAGCGTCATGATGAAACGTTGGAGCGC
CATGATTAAACGTAGGAGCACCTTGATGAGACATTGAAGTGCCATGATGA
GACATTGAAGCCccatgatgagacgttgaagcgccatgttgagacgttga
agcgccatgatgagacgttgGAGCGCCATGTTGAGATgttgaagcgccat
gatgagacgttgaagcgccatgatgagacgttgaagcgccatgatgagac
gttgaagcgccatgatgagacgtaTAAATGTCTTGTTCAGGCGGCGGAGC
GTCTTGTTCAGGCAGCGGAGCGTCGTGTTCAGGCGGCGGAGCGTCATGTT
CAGGCGGTGGAGCGTCATGTTCAGACGGCGGAGCGTCATGTTCAGGCGGC
GGAGTGTCATGTTCAGGCGGCGGAGCGTCATGTTCAGGCGGCGGAGTGTC
ATGTTCAAGTAGCAGAGCGTCATGTTCAAACGATAGAACATCATGGTTAA
ACAACAGAACATCATGTTGAGGCGGTGGGGCGTTATGTTGAAGCGAAGCG
ATACCATGTTGAGACAAN
Run BLAST on NCBI

protein sequence of TCONS_00053991-protein

>TCONS_00053991-protein ID=TCONS_00053991-protein|Name=TCONS_00053991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
LSQHGIASLQHNAPPPQHDVLLFNHDVLSFEHDALLLEHDTPPPEHDAPP
PEHDTPPPEHDAPPSEHDAPPPEHDAPPPEHDAPLPEQDAPPPEQDIYTS
HHGASTSHHGASTSHHGASTSHHGASTSQHGAPTSHHGASTSQHGASTSH
HGASMSHHGTSMSHQGAPTFNHGAPTFHHDAPTSQQGAP
Run BLAST on NCBI

transcript from alignment at scaffold_237:57715..58282

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053991 ID=TCONS_00053991|Name=TCONS_00053991|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at scaffold_237:57715..58282 (Clytia hemisphaerica)
NTTGTCTCAACATGGTATCGCTTCGCTTCAACATAACGCCCCACCGCCTC
AACATGATGTTCTGTTGTTTAACCATGATGTTCTATCGTTTGAACATGAC
GCTCTGCTACTTGAACATGACACTCCGCCGCCTGAACATGACGCTCCGCC
GCCTGAACATGACACTCCGCCGCCTGAACATGACGCTCCGCCGTCTGAAC
ATGACGCTCCACCGCCTGAACATGACGCTCCGCCGCCTGAACACGACGCT
CCGCTGCCTGAACAAGACGCTCCGCCGCCTGAACAAGACATTTAtacgtc
tcatcatggcgcttcaacgtctcatcatggcgcttcaacgtctcatcatg
gcgcttcaacgtctcatcatggcgcttcaacATCTCAACATGGCGCTCca
acgtctcatcatggcgcttcaacgtctcaacatggcgcttcaacgtctca
tcatggGGCTTCAATGTCTCATCATGGCACTTCAATGTCTCATCAAGGTG
CTCCTACGTTTAATCATGGCGCTCCAACGTTTCATCATGACGCTCCTACA
TCGCAACAAGGCGCTCCT

Coding sequence (CDS) from alignment at scaffold_237:57715..58282

>TCONS_00053991 ID=TCONS_00053991|Name=TCONS_00053991|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_237:57715..58282 (Clytia hemisphaerica)
TTGTCTCAACATGGTATCGCTTCGCTTCAACATAACGCCCCACCGCCTCA
ACATGATGTTCTGTTGTTTAACCATGATGTTCTATCGTTTGAACATGACG
CTCTGCTACTTGAACATGACACTCCGCCGCCTGAACATGACGCTCCGCCG
CCTGAACATGACACTCCGCCGCCTGAACATGACGCTCCGCCGTCTGAACA
TGACGCTCCACCGCCTGAACATGACGCTCCGCCGCCTGAACACGACGCTC
CGCTGCCTGAACAAGACGCTCCGCCGCCTGAACAAGACATTTAtacgtct
catcatggcgcttcaacgtctcatcatggcgcttcaacgtctcatcatgg
cgcttcaacgtctcatcatggcgcttcaacATCTCAACATGGCGCTCcaa
cgtctcatcatggcgcttcaacgtctcaacatggcgcttcaacgtctcat
catggGGCTTCAATGTCTCATCATGGCACTTCAATGTCTCATCAAGGTGC
TCCTACGTTTAATCATGGCGCTCCAACGTTTCATCATGACGCTCCTACAT
CGCAACAAGGCGCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034076XLOC_034076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053991-exon-scaffold_237-1491911889:57715..58282TCONS_00053991-exon-scaffold_237-1491911889:57715..58282Clytia hemisphaericaexon
TCONS_00053991-exon-scaffold_237-1510915933:57715..58282TCONS_00053991-exon-scaffold_237-1510915933:57715..58282Clytia hemisphaericaexon
TCONS_00053991-exon-scaffold_237-1575043694:57715..58282TCONS_00053991-exon-scaffold_237-1575043694:57715..58282Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053991-proteinTCONS_00053991-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:57715..58282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.14349	3.84756	2.48858	1.52135	0.399808	0.724889	0.762322	0.475784	0.0832769	0	0	0.444137	0.394348	0.204767	0.448923	0.120441	0.167306	0.456234	0.735363	0.503625	0.779084	1.11852	0.376029	0.806683	1.16713	0.587122	0.911705	0.43385	0.219373	0.558767
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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