TCONS_00053880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053880
Unique NameTCONS_00053880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053880 ID=TCONS_00053880|Name=TCONS_00053880|organism=Clytia hemisphaerica|type=transcript|length=722bp
GCAAGATGTTGAGAGTGAGTATAGCGAGGTTCACGACAAAATAAATTGGG
AAAGCGGTGCGATAGGTGTGTTTTGGCATAAAAACTGCAAGTTGTCTTTG
ATGAACAGAAAGTCGTTTGAAAAAGCAAGCCGCAGACTAGAAAACttgca
aaatcaacaaaatgaagAGCCACCACCAGTTCGTCgtagaagaagaaaga
aatacAACTTTGAACCACGAGACACAAGAAAGAGTATTGGCGTATTCCAT
AGATCAGATGTGTGTATTTGGTGTGGCAAAGGTCATGAACCCAAGCATAA
AAGGGTTTTACAACTGATGGACACGCCCGAAATGTGGGACGGGATTTAAA
AATTGTATTGGACTGGATAAGgatACGACAAGGCGCGCAAGATTGAGAAG
GCTTGTTGAGTCTCTAGGATCAGAgaaagaaataccaaaaaatattCGCT
ATCATTCAACTTGCTATCGCATAAATACTCGAACCTATGAGGCAGTTTCT
CAAGTTGACGAAGGAGAAGAAGCGTATTCAGCTGCcaggaaaatgttttt
agaatCGGTTGAGAGAAGTCTGTTCCAGGAAGGAGAAATGCGcactctta
aaagtttgaaagaagAATATGAGCAAATCAGGGAAGGATTTGGTATCTTA
GGAGAGACAAGAACAACCTTTGTGAAAGATTGTTTGGTTAGTAAATTTGG
AGACCGTGTCGTAATACAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00053880-protein

>TCONS_00053880-protein ID=TCONS_00053880-protein|Name=TCONS_00053880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
QDVESEYSEVHDKINWESGAIGVFWHKNCKLSLMNRKSFEKASRRLENLQ
NQQNEEPPPVRRRRRKKYNFEPRDTRKSIGVFHRSDVCIWCGKGHEPKHK
RVLQLMDTPEMWDGI
Run BLAST on NCBI

transcript from alignment at scaffold_235:47373..48384+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053880 ID=TCONS_00053880|Name=TCONS_00053880|organism=Clytia hemisphaerica|type=transcript|length=1012bp|location=Sequence derived from alignment at scaffold_235:47373..48384+ (Clytia hemisphaerica)
GCAAGATGTTGAGAGTGAGTATAGCGAGGTTCACGACAAAATAAATTGGG
AAAGCGGTGCGATAGGTGTGTTTTGGCATAAAAACTGCAAGTTGTCTTTG
ATGAACAGAAAGTCGTTTGAAAAAGCAAGCCGCAGACTAGAAAACttgca
aaatcaacaaaatgaagAGCCACCACCAGTTCGTCgtagaagaagaaaga
aatacAACTTTGAACCACGAGACACAAGAAAGAGTATTGGCGTATTCCAT
AGATCAGATGTGTGTATTTGGTGTGGCAAAGGTAAGTGTTTTTGCATTAT
TATACGAGAACTATGATAAATACTCTAAAACATCTCCGGCTTATGAATCT
TAAGGGAGGCATATTTGTTGAGATTCGCAAAAACTGTGTAAAATGTTTTT
CGTTTACAGGTCATGAACCCAAGCATAAAAGGGTTTTACAACTGATGGAC
ACGCCCGAAATGTGGGACGGGATTTAAAAATTGTATTGGACTGGATAAGG
TAAAAGCGGTTATTACATACTGATAAAGTTATGAAATGTTCTTGTTACAA
TTCAGCAATTAAGTATAGTAATAATAGATCAACAGATTCTCAAGCATCCC
TGTGATGAAAATTATCAGTATAATCTCTGATCCAGTATttctttagtatt
ttttttctcaggatACGACAAGGCGCGCAAGATTGAGAAGGCTTGTTGAG
TCTCTAGGATCAGAgaaagaaataccaaaaaatattCGCTATCATTCAAC
TTGCTATCGCATAAATACTCGAACCTATGAGGCAGTTTCTCAAGTTGACG
AAGGAGAAGAAGCGTATTCAGCTGCcaggaaaatgtttttagaatCGGTT
GAGAGAAGTCTGTTCCAGGAAGGAGAAATGCGcactcttaaaagtttgaa
agaagAATATGAGCAAATCAGGGAAGGATTTGGTATCTTAGGAGAGACAA
GAACAACCTTTGTGAAAGATTGTTTGGTTAGTAAATTTGGAGACCGTGTC
GTAATACAAAAG

Coding sequence (CDS) from alignment at scaffold_235:47373..48384+

>TCONS_00053880 ID=TCONS_00053880|Name=TCONS_00053880|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_235:47373..48384+ (Clytia hemisphaerica)
CAAGATGTTGAGAGTGAGTATAGCGAGGTTCACGACAAAATAAATTGGGA
AAGCGGTGCGATAGGTGTGTTTTGGCATAAAAACTGCAAGTTGTCTTTGA
TGAACAGAAAGTCGTTTGAAAAAGCAAGCCGCAGACTAGAAAACttgcaa
aatcaacaaaatgaagAGCCACCACCAGTTCGTCgtagaagaagaaagaa
atacAACTTTGAACCACGAGACACAAGAAAGAGTATTGGCGTATTCCATA
GATCAGATGTGTGTATTTGGTGTGGCAAAGGTCATGAACCCAAGCATAAA
AGGGTTTTACAACTGATGGACACGCCCGAAATGTGGGACGGGATTTAACA
AGATGTTGAGAGTGAGTATAGCGAGGTTCACGACAAAATAAATTGGGAAA
GCGGTGCGATAGGTGTGTTTTGGCATAAAAACTGCAAGTTGTCTTTGATG
AACAGAAAGTCGTTTGAAAAAGCAAGCCGCAGACTAGAAAACttgcaaaa
tcaacaaaatgaagAGCCACCACCAGTTCGTCgtagaagaagaaagaaat
acAACTTTGAACCACGAGACACAAGAAAGAGTATTGGCGTATTCCATAGA
TCAGATGTGTGTATTTGGTGTGGCAAAGGTCATGAACCCAAGCATAAAAG
GGTTTTACAACTGATGGACACGCCCGAAATGTGGGACGGGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034009XLOC_034009Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053880-proteinTCONS_00053880-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053880-exon-scaffold_235-1491911889:47373..47653TCONS_00053880-exon-scaffold_235-1491911889:47373..47653Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1510915933:47373..47653TCONS_00053880-exon-scaffold_235-1510915933:47373..47653Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1575043694:47373..47653TCONS_00053880-exon-scaffold_235-1575043694:47373..47653Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1491911889:47782..47871TCONS_00053880-exon-scaffold_235-1491911889:47782..47871Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1510915933:47782..47871TCONS_00053880-exon-scaffold_235-1510915933:47782..47871Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1575043694:47782..47871TCONS_00053880-exon-scaffold_235-1575043694:47782..47871Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1491911889:48034..48384TCONS_00053880-exon-scaffold_235-1491911889:48034..48384Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1510915933:48034..48384TCONS_00053880-exon-scaffold_235-1510915933:48034..48384Clytia hemisphaericaexon
TCONS_00053880-exon-scaffold_235-1575043694:48034..48384TCONS_00053880-exon-scaffold_235-1575043694:48034..48384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:47373..48384 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207472	0.404636	0.0783035	0.536255	0.317661	0.515882	0.177825	0.332956	0.291388	0.158558	0	0.322409	0.297947	0	0.196349	0.0893677	0.103832	0.112842	0	0.384645	0.224357	0.106055	0.158589	0.216271	3.05393	1.68315	0.189657	0.116954	0.328942	0.197654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top