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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053870 ID=TCONS_00053870|Name=TCONS_00053870|organism=Clytia hemisphaerica|type=transcript|length=1037bp
ttattcgaacttctattattcgaacttctacaattcgaacttattctcaG
TTCCATCAAGATGAAACCCTCTTAAAGTtatctctataattcgaatctat
ctgttatttgaataaaaaagattCCCGTATTAAGTCTGAATTAGCGATAG
TCAACTGTACGATAGATGGATTCTTTAAGCCAGTCTCTGTAAAGGGGAGG
GTAGGTCCGGACTGGCAGAACAACcgttaaagtggggaggctgaaggatc
aaaatgagataaaattttctaGGAGTTcgagaaaaattctttcaatttta
aaaGATGATACGATGTAGCCATTCTTTAATCCTAATCCTTATTGGTactt
agttctttcattttaacaCCTCTTTTGACAATGGTATTCTCACATTTTCA
CATTTCTTTCCTTCTGATATATCTAATACCAATATCTTAAGGCAGAGTCT
AAGGTAGAATGCGCcaataagcccgaagggctagaatcgattctttaatc
tttctcgggcaagaaaaagtgaagccttgaaatatgcgccgcatttttga
cgacggatcgAACCtagtaattcctttgtttttgagtgatattgttttca
aaattcagCGGTAAGTTTtaatttcaatctgtcatttgtgtaaaaaccag
gcgggtcgcgcTAGGCTGCGCAACTTTgttaggatttgttggctttaaAT
CCTACCAGGGAGATTCAattctagctcttcgggcttatTCTTCATTGGAA
TGCACCCTTTCGGCAGCCTGGGATGATGGAACGAGTTGGCCATTAAAGCT
TATTATGCGTAACTAAAGAATTCTTATGATAAAATCGAATAATAATATAA
CATCATGTAAAATTTTATATCCTTAAGTCAGtataaatttttgagattta
tgagaaaaaaatttttgttcattATAATTAGTGAATTGTTTTATGAGGTA
CTTGTAAATATAACGAGGCATAGGGTATAAACCTGtaacaaaaagataaa
aattctcaaaaaactaTTAAGGTGTGTGACTCTTCCA Run BLAST on NCBI transcript from alignment at scaffold_234:476334..477370 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053870 ID=TCONS_00053870|Name=TCONS_00053870|organism=Clytia hemisphaerica|type=transcript|length=1037bp|location=Sequence derived from alignment at scaffold_234:476334..477370 (Clytia hemisphaerica)
TGGAAGAGTCACACACCTTAAtagttttttgagaatttttatctttttgt
taCAGGTTTATACCCTATGCCTCGTTATATTTACAAGTACCTCATAAAAC
AATTCACTAATTATaatgaacaaaaatttttttctcataaatctcaaaaa
tttataCTGACTTAAGGATATAAAATTTTACATGATGTTATATTATTATT
CGATTTTATCATAAGAATTCTTTAGTTACGCATAATAAGCTTTAATGGCC
AACTCGTTCCATCATCCCAGGCTGCCGAAAGGGTGCATTCCAATGAAGAa
taagcccgaagagctagaatTGAATCTCCCTGGTAGGATttaaagccaac
aaatcctaacAAAGTTGCGCAGCCTAgcgcgacccgcctggtttttacac
aaatgacagattgaaattaAAACTTACCGctgaattttgaaaacaatatc
actcaaaaacaaaggaattactaGGTTcgatccgtcgtcaaaaatgcggc
gcatatttcaaggcttcactttttcttgcccgagaaagattaaagaatcg
attctagcccttcgggcttattgGCGCATTCTACCTTAGACTCTGCCTTA
AGATATTGGTATTAGATATATCAGAAGGAAAGAAATGTGAAAATGTGAGA
ATACCATTGTCAAAAGAGGtgttaaaatgaaagaactaagtACCAATAAG
GATTAGGATTAAAGAATGGCTACATCGTATCATCttttaaaattgaaaga
atttttctcgAACTCCtagaaaattttatctcattttgatccttcagcct
ccccactttaacgGTTGTTCTGCCAGTCCGGACCTACCCTCCCCTTTACA
GAGACTGGCTTAAAGAATCCATCTATCGTACAGTTGACTATCGCTAATTC
AGACTTAATACGGGaatcttttttattcaaataacagatagattcgaatt
atagagataACTTTAAGAGGGTTTCATCTTGATGGAACtgagaataagtt
cgaattgtagaagttcgaataatagaagttcgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053870-exon-scaffold_234-1491911889:476334..477370 | TCONS_00053870-exon-scaffold_234-1491911889:476334..477370 | Clytia hemisphaerica | exon |
| TCONS_00053870-exon-scaffold_234-1510915933:476334..477370 | TCONS_00053870-exon-scaffold_234-1510915933:476334..477370 | Clytia hemisphaerica | exon |
| TCONS_00053870-exon-scaffold_234-1575043694:476334..477370 | TCONS_00053870-exon-scaffold_234-1575043694:476334..477370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:476334..477370 . |
Blast
The following BLAST results are available for this feature:
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