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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053842 ID=TCONS_00053842|Name=TCONS_00053842|organism=Clytia hemisphaerica|type=transcript|length=4917bpRun BLAST on NCBI protein sequence of PL10 >TCONS_00053842-protein ID=TCONS_00053842-protein|Name=PL10|organism=Clytia hemisphaerica|type=polypeptide|length=681bp MSHVVQNDVQGLGQQVASLDLNKAEGNHQQHHGHGGPKKYVPPHMRSSGGRun BLAST on NCBI transcript from alignment at scaffold_234:336021..352466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053842 ID=TCONS_00053842|Name=TCONS_00053842|organism=Clytia hemisphaerica|type=transcript|length=16446bp|location=Sequence derived from alignment at scaffold_234:336021..352466- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_234:336021..352466- >TCONS_00053842 ID=TCONS_00053842|Name=TCONS_00053842|organism=Clytia hemisphaerica|type=CDS|length=30690bp|location=Sequence derived from alignment at scaffold_234:336021..352466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053842 vs. Swiss-Prot (Human)
Match: DDX3X (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3) HSP 1 Score: 678.707 bits (1750), Expect = 0.000e+0 Identity = 329/460 (71.52%), Postives = 390/460 (84.78%), Query Frame = 2
Query: 1157 ERG--AKWDGDTGNPEDWSKPLPRNERLERELFSSNQSGINFDKYEDIPVETTGNDSPKSIDSFEEASLGEIMNFNIELAKYTKPTPVQKSSIPIVKGKRDLMACAQTGSGKTAAFLIPILSRIFEEGPFE--NAGTIHSGTSRRKQFPIAIILAPTRELASQIYDESRKFTYRSHMRPCVVYGGADVGTQMRDIDRGCHLLVGTPGRLVDMIQRGKIGLECVQFLCLDEADRMLDMGFEPQIREIVEKCDMPVTGQRQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKREFLLDLLNASGPDSLTLVFVETKRGADALEHFLVSCPDNYRVSSIHGDRHQREREQALASFRSGNTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTGLSTSFFNDKNRNISRDLIDILSDAKQEVPSWLESMGY 2524
ERG ++W D + +DWSKPLP +ERLE+ELFS +GINF+KY+DIPVE TGN+ P I+SF + +GEI+ NIEL +YT+PTPVQK +IPI+K KRDLMACAQTGSGKTAAFL+PILS+I+ +GP E A + RRKQ+PI+++LAPTRELA QIY+E+RKF+YRS +RPCVVYGGAD+G Q+RD++RGCHLLV TPGRLVDM++RGKIGL+ ++L LDEADRMLDMGFEPQIR IVE+ MP G R T+MFSATFPKEIQMLARDFLD YIFLAVGRVGSTSENITQKVVWVEE DKR FLLDLLNA+G DSLTLVFVETK+GAD+LE FL + Y +SIHGDR QR+RE+AL FRSG +PILVATAVAARGLDI NVKHVINFD+PSDIEEYVHRIGRTGRVG+ GL+TSFFN++N NI++DL+D+L +AKQEVPSWLE+M Y
Sbjct: 120 ERGGNSRW-CDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAY 576 The following BLAST results are available for this feature:
BLAST of TCONS_00053842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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