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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053704 ID=TCONS_00053704|Name=TCONS_00053704|organism=Clytia hemisphaerica|type=transcript|length=2161bp
CACCAATGTCTTTTACAATCGCTGAAAGATTCACCCTACTATCAAGGATT
CATTGACAAAGCTACCATTTGGGAAACTCGGCTCGCCGATTTGGACGAGT
ACCTTCACAACCTCAATCAGATTCAAAGGAAGTGGGTTTATCTGGAACCC
ATTTTTGGTCGCGGTGCGTTACCAAGGGAACAAGATCGATTCAAAAGGGT
GGATGACGATTTCAGGTAAACAATGACGGAAATATTCGGGGCTTGTATAT
CATATTATTATCCGCCGCGCGTAAATAGCAACATTTGATTGACTGCTTTA
CTGTCCAATATTCTCGAATATGTAGATTCTGTGGAGGCTATATATTTCCA
AAATTGACATCACGCAACAAATTTAACATTCTAACAATTTGATACAATAG
GTAGTTATGTActacctgaaaaaaaattgaaattaaaatcctAGGAAAAT
TAAAATGACAAATTTCAGCTTTTATATAAAGTGACATTGTCCTCGTATTT
GAATAATACTTCTTATTCATTCCAAATTCTGAGGAACAGTAAATATAGTC
TATATGTTATGTATTTCAAGCAAGGAAAAGTGAGACCATGTCCTGTATTA
ATTCGTTTTTCATAAATGTTTTCCATAAATGCCACGATACATTTGAAAGc
gctcttcttcattttcaatttcttgccAACGTTCAAATTCAGCTTTTTTA
AGCGGTTTGAAAGCATTCATGAAAACTTCACCAAGCTCTTCACAAAATAT
GCTATCCTCTTCCAAACACTTCATTGCTTCTGGTAAACTTTCTGGAACCT
TATCAATACCTGACGGTAGATCTTGAACGCCGAGCATCATACCAACAAAA
GGCTCTGACTTCAGGGGTAGTTTCTGCTTAATACCATCCATGCCCGCAAT
CAAACACCCGGTCATTACTAAATACGGATTACATCCAGCACCTGGCAATC
GATCTTCAATGTAGGTTCTACGAACACTGTAATTCTTTATCCTGTAACAG
ACACTACGATTGTCAAATCCCCAAGAATTGTTGACCGGTACAAAATGGAT
TTCCTTTTTCGTTTGGCAACGTTCAACACAGTTGTTAGTCGCCCAATACA
AAGCAGATAAGGCTTTCGAATGGTGTTGTAAACCAGCCAACCAGTACTTA
CAAACTTCTGACAACTTGTCATCGTTTGTGATATCTGAGAAtgcattttc
ttttttggtcaaatccCATAGGGAATGGTTGAAATGACTCGAGCAATCAG
CTTCTTCTGCGAAACACTGAGATAGAAAGATCGCTTCCATTTGATACTTT
TCAGCTATATTTTGCACAGCTTTCTTGTAGCGGATTGCATTATCGACAGA
CTTGATTCCGAACTCAGGTTTAATGGTTATCTCTTGTTGGGCAGGCCCAT
CTTCAACGGTGTACACTTCTACATCAATACCCGTCTGTTCGAGCACCGTC
ATGACTTCTTGGATAAAAGGACGTATTTCTCTTCCAATTGATTCTGAATA
TAAGTTGGTATCTTCGTAAACCGGCTTCATTGTATCTTTATGGAGCAGAT
AGAACTCATATTCGTATGAACTGAACAAATGGTATCCCATTTCTTCCAGT
TTTACCAATTGCTTTTTGCATTGTTGACGGCAAGACGTTTCCAAATATTC
GATTTTCCTTCCTTTCAAATCGAGATCACAAAAAACACCTGCCGTATCTT
GAAGCCATGGTAAAACACAGAACGTATCGAGATCCGGTGTTACCTCCACG
TTAGGATTACCCAGCTCTAGGGTTAAACCGCCATCCATGACTAGTTTTCC
ATCCGGCAAGAAAAGATTGGTTATTGCTACTCCCAGGTGGAAATCGTCAG
GTAAATTACGAAGAAAGCTTTTTGAACTCATCAGCATGTATTTTGTTGTG
CCACACAGATCAATTGCTTCCAATTGTACAAAGCGAATGTTCTTTTCGGT
TATCTTCTTCCTGATTTCTTCTTCGGTCTTGTTATGAGTCTCTTGTACCA
TCATGTTGAATTAATCGAATTCTTCGTGAGGAATATCTACTTTAACCGCT
AGAAAGAGTTTTTAGTTCGGCTTTTATTACTTTGAGACAGTTGCTACTAC
ACTGAATTAAATACTAGACTAAGTGAGTCACTGCGATCTCGCTTCGGAAG
CTCAAAGTGCT Run BLAST on NCBI transcript from alignment at scaffold_233:1324837..1326997- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053704 ID=TCONS_00053704|Name=TCONS_00053704|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_233:1324837..1326997- (Clytia hemisphaerica)
CACCAATGTCTTTTACAATCGCTGAAAGATTCACCCTACTATCAAGGATT
CATTGACAAAGCTACCATTTGGGAAACTCGGCTCGCCGATTTGGACGAGT
ACCTTCACAACCTCAATCAGATTCAAAGGAAGTGGGTTTATCTGGAACCC
ATTTTTGGTCGCGGTGCGTTACCAAGGGAACAAGATCGATTCAAAAGGGT
GGATGACGATTTCAGGTAAACAATGACGGAAATATTCGGGGCTTGTATAT
CATATTATTATCCGCCGCGCGTAAATAGCAACATTTGATTGACTGCTTTA
CTGTCCAATATTCTCGAATATGTAGATTCTGTGGAGGCTATATATTTCCA
AAATTGACATCACGCAACAAATTTAACATTCTAACAATTTGATACAATAG
GTAGTTATGTACTACCTGAAAAAAAATTGAAATTAAAATCCTAGGAAAAT
TAAAATGACAAATTTCAGCTTTTATATAAAGTGACATTGTCCTCGTATTT
GAATAATACTTCTTATTCATTCCAAATTCTGAGGAACAGTAAATATAGTC
TATATGTTATGTATTTCAAGCAAGGAAAAGTGAGACCATGTCCTGTATTA
ATTCGTTTTTCATAAATGTTTTCCATAAATGCCACGATACATTTGAAAGC
GCTCTTCTTCATTTTCAATTTCTTGCCAACGTTCAAATTCAGCTTTTTTA
AGCGGTTTGAAAGCATTCATGAAAACTTCACCAAGCTCTTCACAAAATAT
GCTATCCTCTTCCAAACACTTCATTGCTTCTGGTAAACTTTCTGGAACCT
TATCAATACCTGACGGTAGATCTTGAACGCCGAGCATCATACCAACAAAA
GGCTCTGACTTCAGGGGTAGTTTCTGCTTAATACCATCCATGCCCGCAAT
CAAACACCCGGTCATTACTAAATACGGATTACATCCAGCACCTGGCAATC
GATCTTCAATGTAGGTTCTACGAACACTGTAATTCTTTATCCTGTAACAG
ACACTACGATTGTCAAATCCCCAAGAATTGTTGACCGGTACAAAATGGAT
TTCCTTTTTCGTTTGGCAACGTTCAACACAGTTGTTAGTCGCCCAATACA
AAGCAGATAAGGCTTTCGAATGGTGTTGTAAACCAGCCAACCAGTACTTA
CAAACTTCTGACAACTTGTCATCGTTTGTGATATCTGAGAATGCATTTTC
TTTTTTGGTCAAATCCCATAGGGAATGGTTGAAATGACTCGAGCAATCAG
CTTCTTCTGCGAAACACTGAGATAGAAAGATCGCTTCCATTTGATACTTT
TCAGCTATATTTTGCACAGCTTTCTTGTAGCGGATTGCATTATCGACAGA
CTTGATTCCGAACTCAGGTTTAATGGTTATCTCTTGTTGGGCAGGCCCAT
CTTCAACGGTGTACACTTCTACATCAATACCCGTCTGTTCGAGCACCGTC
ATGACTTCTTGGATAAAAGGACGTATTTCTCTTCCAATTGATTCTGAATA
TAAGTTGGTATCTTCGTAAACCGGCTTCATTGTATCTTTATGGAGCAGAT
AGAACTCATATTCGTATGAACTGAACAAATGGTATCCCATTTCTTCCAGT
TTTACCAATTGCTTTTTGCATTGTTGACGGCAAGACGTTTCCAAATATTC
GATTTTCCTTCCTTTCAAATCGAGATCACAAAAAACACCTGCCGTATCTT
GAAGCCATGGTAAAACACAGAACGTATCGAGATCCGGTGTTACCTCCACG
TTAGGATTACCCAGCTCTAGGGTTAAACCGCCATCCATGACTAGTTTTCC
ATCCGGCAAGAAAAGATTGGTTATTGCTACTCCCAGGTGGAAATCGTCAG
GTAAATTACGAAGAAAGCTTTTTGAACTCATCAGCATGTATTTTGTTGTG
CCACACAGATCAATTGCTTCCAATTGTACAAAGCGAATGTTCTTTTCGGT
TATCTTCTTCCTGATTTCTTCTTCGGTCTTGTTATGAGTCTCTTGTACCA
TCATGTTGAATTAATCGAATTCTTCGTGAGGAATATCTACTTTAACCGCT
AGAAAGAGTTTTTAGTTCGGCTTTTATTACTTTGAGACAGTTGCTACTAC
ACTGAATTAAATACTAGACTAAGTGAGTCACTGCGATCTCGCTTCGGAAG
CTCAAAGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053704-exon-scaffold_233-1575043694:1324837..1326997 | TCONS_00053704-exon-scaffold_233-1575043694:1324837..1326997 | Clytia hemisphaerica | exon |
| TCONS_00053704-exon-scaffold_233-1510915933:1324837..1326997 | TCONS_00053704-exon-scaffold_233-1510915933:1324837..1326997 | Clytia hemisphaerica | exon |
| TCONS_00053704-exon-scaffold_233-1491911889:1324837..1326997 | TCONS_00053704-exon-scaffold_233-1491911889:1324837..1326997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1324837..1326997 - |
Blast
BLAST of TCONS_00053704 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.470e-53 Identity = 137/422 (32.46%), Postives = 209/422 (49.53%), Query Frame = -2
Query: 694 FVQLEAIDLCGTTKYMLMSSKSFLRNLPDDFHLGVAITNLFL---PDGKLVMDGGLTLELGNPNVEVTPDLDTFCVLPWLQDTAGVFCD-LDLKGRKIEYLETSCRQQCKKQLVKLEEMGYHLFSSYEYEFYLLHKDTMKPVYEDTNLYS----ESIGREIRPFIQEVMTVLEQTGIDVEVYTVEDGPAQQEITIKPEFGIKSVDNAIRYKKAVQNIAEKYQMEAIFLSQCFAEEADCSSH-FNHSLWDLTKKENAFSDITNDDKLSEVCKYWLAGLQHHSKALSALYWATNNCVERCQTKKEIHFVPVNNSWGFDNRSVCYRIKNYSVRRTYIEDRLPGAGCNPYLVMTGCLIAGMDGIKQKLPLKSEPFVGMMLGVQDLPSGIDKVPESLPEAMKCLEEDSIFCEELGEVFMNAFKPLKK 1932
FV+ EA DL G ++ + + F + GV + +L P+ K + N ++ + P+L TF VLPW TA V CD + G E L TS R K+QL L+ G+ L S++ Y+F + P ++ + S + +PF+QE++ L TG +VE ++ P Q EI+ PEFGI S DNA + V+ +A KY A F F E C S +HSLWD+ +K+N F + ++L+ K WLAGL HS ALS L + +C +R ++ V +WG+++ S + IK + + T IE++L A NPYLV+ + AG+DG+ + + P Q PS ++P L +A+ LEED + LGE F+ F +KK
Sbjct: 87 FVRFEATDLHGVSRSKTIPAHFFQEKVSH----GVCMPRGYLEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTG---EPLLTSPRYIAKRQLSHLQASGFSLLSAFIYDFCIFGV----PEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASF----FIETGFCDSGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDF-YQVEPS---EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKK 489
The following BLAST results are available for this feature:
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