|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053763 ID=TCONS_00053763|Name=TCONS_00053763|organism=Clytia hemisphaerica|type=transcript|length=1298bp
TGCTCagaataatgaaaaaaacatcccctgaacattttttagaaaaattc
ctTCCGGTTGCTGAGATATTGTCCATTGAAATTTCGATCTGGTCTGCAAA
ATGGAAGAGCTCCTTTGAAATGATTTTTAGCCCATTTTGAGCATAAAGAG
GTCCCCATCTCTCCATTTCTTGGAAATATGGGATAAGCTCTACACAAAAG
ATCGGTGTCTGGAAGCGTTTTCGCCAAATTTCTGCCCTTTCTGAGATCAA
ATATCTTACTCAGGCCTCACTTCTACATGTACCAGTTAGGATTTTCTGAT
AAACAACTGAACTTACTttcatttcaacaaaaaaatttcatgggCCAACA
ATgtgtcatttttaaattttttaaagtaCGAAATGTCCCACTTTCACGGC
CCATAATGGCTGCTGCCCTCactttgacaaatttttttcggaaGAATTAG
CTGCTATTACCCTTCCCCTTTCCATATCTGAAAAGAAATTCATGGGCCCT
AGTCTCTTTGAGTCAGAATAAGCTATAAGATGAAAGTGATGTGATATCAC
TTTGCCTGGATCTctcagaaaatggctcttaacaTTTTAACATACACTGA
AAATTTGTCGAAGAAGGTTACAAAGGAATAAGTTAAAGTAACAaagaaat
tagagaagaaaGTCACGAAGGAATGAAATTCAAGTAACAAAGAAATTAGA
GCAAAAAGTTACGAAGGATTAGAGCTCAAAGTAACAAAGCAGTTAGACAA
GAATGTCACGAAGGAATAGAATTTGAAGTAACAaagaaattagagaagaa
aGTTACGAAGGAATAAGTAAAAGTAACAAATAAATTAGAGACAAAAGTCA
TGAAAGAATAGAGTTTGAAGTAACAAAGAAATTAGAGAAGAGAGTTACAG
AGGAATAGAGTTCGAagtaacaaaaaagttaaagaagCAAGTTACAAAGG
AATAggggcttttaggggcggttcagaactagggggggggcttaTCCTGT
ACCActccttaacttttgatctagtctttttggatgaaatacATGATTCT
TGTCATATAAGCTAACAGacagttttgatgacgtcactcatcatgcccga
AAATTTCCTAATTGTTCTTCTAAATAGCTATTTAGTTTATAAATGCTTAT
TTCATCCTAAATAATCAATAAATTATCTAAACGATAtaatttgacataaa
aaataaatttggatATAAATTggaaatgtgtcaatttttatgacactttA
CTGTCATTTGGTCAAAAGTTTTAGGTGtgaaaaattttatgttttatt Run BLAST on NCBI transcript from alignment at scaffold_233:1085684..1086981 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053763 ID=TCONS_00053763|Name=TCONS_00053763|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at scaffold_233:1085684..1086981 (Clytia hemisphaerica)
aataaaacataaaatttttcaCACCTAAAACTTTTGACCAAATGACAGTa
aagtgtcataaaaattgacacatttccAATTTATatccaaatttattttt
tatgtcaaattaTATCGTTTAGATAATTTATTGATTATTTAGGATGAAAT
AAGCATTTATAAACTAAATAGCTATTTAGAAGAACAATTAGGAAATTTtc
gggcatgatgagtgacgtcatcaaaactgtCTGTTAGCTTATATGACAAG
AATCATgtatttcatccaaaaagactagatcaaaagttaaggagTGGTAC
AGGAtaagccccccccctagttctgaaccgcccctaaaagccccTATTCC
TTTGTAACTTGcttctttaacttttttgttactTCGAACTCTATTCCTCT
GTAACTCTCTTCTCTAATTTCTTTGTTACTTCAAACTCTATTCTTTCATG
ACTTTTGTCTCTAATTTATTTGTTACTTTTACTTATTCCTTCGTAACttt
cttctctaatttcttTGTTACTTCAAATTCTATTCCTTCGTGACATTCTT
GTCTAACTGCTTTGTTACTTTGAGCTCTAATCCTTCGTAACTTTTTGCTC
TAATTTCTTTGTTACTTGAATTTCATTCCTTCGTGACtttcttctctaat
ttcttTGTTACTTTAACTTATTCCTTTGTAACCTTCTTCGACAAATTTTC
AGTGTATGTTAAAAtgttaagagccattttctgagAGATCCAGGCAAAGT
GATATCACATCACTTTCATCTTATAGCTTATTCTGACTCAAAGAGACTAG
GGCCCATGAATTTCTTTTCAGATATGGAAAGGGGAAGGGTAATAGCAGCT
AATTCttccgaaaaaaatttgtcaaagtGAGGGCAGCAGCCATTATGGGC
CGTGAAAGTGGGACATTTCGtactttaaaaaatttaaaaatgacacATTG
TTGGcccatgaaatttttttgttgaaatgaaAGTAAGTTCAGTTGTTTAT
CAGAAAATCCTAACTGGTACATGTAGAAGTGAGGCCTGAGTAAGATATTT
GATCTCAGAAAGGGCAGAAATTTGGCGAAAACGCTTCCAGACACCGATCT
TTTGTGTAGAGCTTATCCCATATTTCCAAGAAATGGAGAGATGGGGACCT
CTTTATGCTCAAAATGGGCTAAAAATCATTTCAAAGGAGCTCTTCCATTT
TGCAGACCAGATCGAAATTTCAATGGACAATATCTCAGCAACCGGAagga
atttttctaaaaaatgttcaggggatgtttttttcattattctGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053763-exon-scaffold_233-1491911889:1085684..1086981 | TCONS_00053763-exon-scaffold_233-1491911889:1085684..1086981 | Clytia hemisphaerica | exon |
| TCONS_00053763-exon-scaffold_233-1510915933:1085684..1086981 | TCONS_00053763-exon-scaffold_233-1510915933:1085684..1086981 | Clytia hemisphaerica | exon |
| TCONS_00053763-exon-scaffold_233-1575043694:1085684..1086981 | TCONS_00053763-exon-scaffold_233-1575043694:1085684..1086981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1085684..1086981 . |
Blast
The following BLAST results are available for this feature:
|
