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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053419 ID=TCONS_00053419|Name=TCONS_00053419|organism=Clytia hemisphaerica|type=transcript|length=1358bp
CAACTAGTACATAAATTGTACTTACTACTCTCACTATCCCCGAACAAAga
ttttgatggttttggtacTTGAGGTGTAGctataagcataaaaaagaaac
ttCAATAATTATTAAGACAAAGTTATGAATGATATCAAATATTATCtcaa
attataaacttttattaCTCACATGTAGTCATGATGGGCTTTGACGAAGG
CGTTTTTGGTATGTCATTGACTTTGGAGTATGGTGCtattaaaaaataat
gattaTAATTATTATGAATCGATTATAAGAGATAATAGAAGAGCCCTTTT
GAATTTCAACCGATATTGATTATCTTTATTGGCTTACCTGGCATCAAAGG
ACTCTGGATATTAAGACCATTGAATAGAGTAGAAGGTGTTTTGTCCAAAA
TTGATGTATCCACTGACTTGTATTCTAAATAGTTATCATAAAAAGCAATC
TTCTCAATATTCAAGCTTTACAGCCCCATTAAGATTTTACAAcagtaaaa
tttattttgtgtgTGTTGTATGTTGTTTGATCTgatccaaaaaaaacttt
ttttcaatagaataatgatgtgaaatattttgaaattaattcttACCAAA
AAGTGAAGTGTTGAAATTCATGAGTTcgttttctccttgcattgcttcCT
CGACATTGTTTGTTGTgcctgaaaaattcaaaaaaacttttaaattcctt
gaaagtttgaagaacGTGGGACAGATTTTATTATGTCAGATTATGTCCAT
TTTTTTGGCTGATATCAGCAGAATTGTTTTTAGTCAGTCTCACCGTCATC
TTCAGCAATCATCGTTATATCAAAATTGTTGTGTTCACTTTTGTCAAATC
TATCCTCTCCGTCTTCATGTTCCTTGGCAATTTCTTCATCACTTTCTTCA
GAACACTCTTCTTCGTCACTTTCTTCATAACACACTTCTTCATCACTTTC
TTCAAAACTGTCTTCTTCATCACTCTCTTCAGAACTgtcttcttctcctt
ctttcgAACTGTCTTTGTTGATTTTAACTGGTTCTATCTCTGGTTCTATG
GATTAAGAAACTTCATGTTAAATATTCAAATTGCAACTATCATTCAACAT
TCAACACCTGACATTGGAAAAGTTTGTCTTTCAAGGTACCctcaaggaaa
atatttttataaagaaagtaaAGTGGAACCTAAAGAAAGACATTAAAATT
AGGcatatagtcaggtagaattagcctgagacctggacaaaattgccatc
aagctgaaaattggcacagatgCTCTTTAGGGTATACTGAGTTACCAAAA
AAAGAAGCCCCATCAATCCGGACAGGGGAAACCACTTTTTCGGACAGTTT
AAAACCGG Run BLAST on NCBI protein sequence of TCONS_00053419-protein >TCONS_00053419-protein ID=TCONS_00053419-protein|Name=TCONS_00053419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MFLGNFFITFFRTLFFVTFFITHFFITFFKTVFFITLFRTVFFSFFRTVF
VDFNWFYLWFYGLRNFMLNIQIATIIQHSTPDIGKVCLSRYPQGKYFYKE
SKVEPKERH Run BLAST on NCBI transcript from alignment at scaffold_230:45647..47004 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053419 ID=TCONS_00053419|Name=TCONS_00053419|organism=Clytia hemisphaerica|type=transcript|length=1358bp|location=Sequence derived from alignment at scaffold_230:45647..47004 (Clytia hemisphaerica)
CCGGTTTTAAACTGTCCGAAAAAGTGGTTTCCCCTGTCCGGATTGATGGG
GCTTCTTTTTTTGGTAACTCAGTATACCCTAAAGAGcatctgtgccaatt
ttcagcttgatggcaattttgtccaggtctcaggctaattctacctgact
atatgCCTAATTTTAATGTCTTTCTTTAGGTTCCACTttactttctttat
aaaaatattttccttgagGGTACCTTGAAAGACAAACTTTTCCAATGTCA
GGTGTTGAATGTTGAATGATAGTTGCAATTTGAATATTTAACATGAAGTT
TCTTAATCCATAGAACCAGAGATAGAACCAGTTAAAATCAACAAAGACAG
TTcgaaagaaggagaagaagacAGTTCTGAAGAGAGTGATGAAGAAGACA
GTTTTGAAGAAAGTGATGAAGAAGTGTGTTATGAAGAAAGTGACGAAGAA
GAGTGTTCTGAAGAAAGTGATGAAGAAATTGCCAAGGAACATGAAGACGG
AGAGGATAGATTTGACAAAAGTGAACACAACAATTTTGATATAACGATGA
TTGCTGAAGATGACGGTGAGACTGACTAAAAACAATTCTGCTGATATCAG
CCAAAAAAATGGACATAATCTGACATAATAAAATCTGTCCCACgttcttc
aaactttcaaggaatttaaaagtttttttgaatttttcaggcACAACAAA
CAATGTCGAGgaagcaatgcaaggagaaaacgAACTCATGAATTTCAACA
CTTCACTTTTTGGTaagaattaatttcaaaatatttcacatcattattct
attgaaaaaaagttttttttggatcAGATCAAACAACATACAACAcacac
aaaataaattttactgTTGTAAAATCTTAATGGGGCTGTAAAGCTTGAAT
ATTGAGAAGATTGCTTTTTATGATAACTATTTAGAATACAAGTCAGTGGA
TACATCAATTTTGGACAAAACACCTTCTACTCTATTCAATGGTCTTAATA
TCCAGAGTCCTTTGATGCCAGGTAAGCCAATAAAGATAATCAATATCGGT
TGAAATTCAAAAGGGCTCTTCTATTATCTCTTATAATCGATTCATAATAA
TTAtaatcattattttttaataGCACCATACTCCAAAGTCAATGACATAC
CAAAAACGCCTTCGTCAAAGCCCATCATGACTACATGTGAGtaataaaag
tttataatttgaGATAATATTTGATATCATTCATAACTTTGTCTTAATAA
TTATTGaagtttcttttttatgcttatagCTACACCTCAAgtaccaaaac
catcaaaatcTTTGTTCGGGGATAGTGAGAGTAGTAAGTACAATTTATGT
ACTAGTTG Coding sequence (CDS) from alignment at scaffold_230:45647..47004 >TCONS_00053419 ID=TCONS_00053419|Name=TCONS_00053419|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_230:45647..47004 (Clytia hemisphaerica)
TTAATGTCTTTCTTTAGGTTCCACTttactttctttataaaaatattttc
cttgagGGTACCTTGAAAGACAAACTTTTCCAATGTCAGGTGTTGAATGT
TGAATGATAGTTGCAATTTGAATATTTAACATGAAGTTTCTTAATCCATA
GAACCAGAGATAGAACCAGTTAAAATCAACAAAGACAGTTcgaaagaagg
agaagaagacAGTTCTGAAGAGAGTGATGAAGAAGACAGTTTTGAAGAAA
GTGATGAAGAAGTGTGTTATGAAGAAAGTGACGAAGAAGAGTGTTCTGAA
GAAAGTGATGAAGAAATTGCCAAGGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053419-exon-scaffold_230-1491911889:45647..47004 | TCONS_00053419-exon-scaffold_230-1491911889:45647..47004 | Clytia hemisphaerica | exon |
| TCONS_00053419-exon-scaffold_230-1510915933:45647..47004 | TCONS_00053419-exon-scaffold_230-1510915933:45647..47004 | Clytia hemisphaerica | exon |
| TCONS_00053419-exon-scaffold_230-1575043694:45647..47004 | TCONS_00053419-exon-scaffold_230-1575043694:45647..47004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_230 | supercontig | scaffold_230:45647..47004 . |
Blast
The following BLAST results are available for this feature:
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