TCONS_00053367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053367
Unique NameTCONS_00053367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053367 ID=TCONS_00053367|Name=TCONS_00053367|organism=Clytia hemisphaerica|type=transcript|length=311bp
GTTTACCGTCGACCACCTGCATGCCCTGGAGCTgccgctcaaaaaagttc
attattttaataaaagttcattattttgtttttttttcagaaatatttcC
AGTTCCAGTATCGGCAATCACCTTTCACATTAACAACCTTCTTTAAAGTC
AGGTTTTCGATCGACGATGATTCACAACATAACTGAGTAAAGGTCGGTCT
CCACAAGGGAGCGGGCGCATTCCCACGTGGACAGAACAAAGTAGCCTGAC
TTTCTACTTTCCGGCGGACAAATTGTTGTGCCATGACACAAGCAAATCTC
CCTGGGTTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_228:354923..355233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053367 ID=TCONS_00053367|Name=TCONS_00053367|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at scaffold_228:354923..355233 (Clytia hemisphaerica)
GGAAACCCAGGGAGATTTGCTTGTGTCATGGCACAACAATTTGTCCGCCG
GAAAGTAGAAAGTCAGGCTACTTTGTTCTGTCCACGTGGGAATGCGCCCG
CTCCCTTGTGGAGACCGACCTTTACTCAGTTATGTTGTGAATCATCGTCG
ATCGAAAACCTGACTTTAAAGAAGGTTGTTAATGTGAAAGGTGATTGCCG
ATACTGGAACTGgaaatatttctgaaaaaaaaacaaaataatgaactttt
attaaaataatgaacttttttgagcggcAGCTCCAGGGCATGCAGGTGGT
CGACGGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033681XLOC_033681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053367-exon-scaffold_228-1491911889:354923..355233TCONS_00053367-exon-scaffold_228-1491911889:354923..355233Clytia hemisphaericaexon
TCONS_00053367-exon-scaffold_228-1510915933:354923..355233TCONS_00053367-exon-scaffold_228-1510915933:354923..355233Clytia hemisphaericaexon
TCONS_00053367-exon-scaffold_228-1575043694:354923..355233TCONS_00053367-exon-scaffold_228-1575043694:354923..355233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:354923..355233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.695375	1.01715	1.57468	2.31087	1.87551	0.370512	0.447007	0	0	0	0	0	0.462472	0	0	0.635613	1.04403	0.267525	0	0.773519	0	0	0	0	0.373297	0.666317	0.476749	0.508799	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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