TCONS_00053288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053288
Unique NameTCONS_00053288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053288 ID=TCONS_00053288|Name=TCONS_00053288|organism=Clytia hemisphaerica|type=transcript|length=1450bp
CTTTACCTTTCTGTATCGCATTCAAAGACCTTGTATTCTTATGTCATTGT
ATTCGGCAGATTTTTGTATTTGGTAGCTTATTTATATAGAATCTTGCTAC
TTCAAGGCTTGCTTGGAtacatattttgaaaacaaagtttttgtattttt
catttaaaggaattttagaaaaataagtaaaaagtaagtaatATCAGAAG
TAATAATGGAGAACCAGTCTTTGGAATCGCAGACAACAGAAAAGGTTGCT
ACCCTTGGTGAGCGAATGAAAACATTCGAGCGTACAGAACAAGTCGAACC
GTACCAAGCATTCATTGTACGAGCTGATGGCAATCGTTTCTCAAAATACA
CCAAAGGTTTACAAAAACCTTTCGATGAAGCATTTCAACGAGCTATGGTC
AAAACAGCCAACGGATTGATGGATCATTTCAGCTGTGCTACCATTTTTGT
ATGTTCAGATGAAATTAGCCTGGTTTTCAGTCCAGTATGCAGTCAAGAAG
AATCAGAGGCTAACCAAGCATCTAACAACAAACAAACGCACATTTACTCT
GGGCGTCATAATAAGATCGAAACATTGGTTAGCTCAAAAGCCTCTGTTCT
CTTTAACAAGTTTATGTTGGAAGAAgtcaggctaaaaagtgccgaAAACC
CTGGTGTATATGCCAAGACTTTCTTAGATAGAGTTGAAAGCCAAGATGCT
ATTTTCGATGCCCGCTTGATTCCGTTTCCTCTAGGGAGCGAATTCGAGAT
TGTCAATAATCTAATATGGCGTTCTTGCTACGATTGTCATAGAAACACTG
TTTCATCATACGGTAGACACGTGTTAGGTACAAAAGCGTGCGAAAATAAA
AAGTCTCACCAAATGATTCAActtatgaaaattgaaaaagatttcgATTT
TGATGAGGTTCCCACGGCGTACaagtttggtgtttttggtaAAAAAGCTT
TACATGTGCTAACTAACGATCAAGGAGAAAATTACACTCGTCATaaacat
ttcaatttttgcaCCAATCTTGTGAAAGAAGACCGAGATTGCACTTTGGA
cttatttatgaaaaaatattttgaagaggGACTAATAATGCATGATGAAT
ATGTGTTGTAAAAGTCAGAGATTGAACATTTTACATTTTGGTTATTCTTT
ATAAGAGCTAGACGGAGTTCTTTATTTATTACAATGTCCAACTGGTACAA
GAGAAGTCGATAATGTTTGTCAACCGTGTTCAGCTGGATACTACCAAACA
AAAGTAGGCCAAAGCGCATGCGTGAAATGTCCGTTCGGTCATACGACAAA
AGAAGTTGGGACTACCAGTCCTCATGATTGCTTTGTTAAgatttaattat
tattttttaatatcCTTAAAATATTGAGaatgaattttttaaagttatAT
ATAATTAGCTTATTCATTAGTAAGGGGTGATTATATATCGAGTGACCCAT
Run BLAST on NCBI

transcript from alignment at scaffold_228:309026..312348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053288 ID=TCONS_00053288|Name=TCONS_00053288|organism=Clytia hemisphaerica|type=transcript|length=3323bp|location=Sequence derived from alignment at scaffold_228:309026..312348+ (Clytia hemisphaerica)
CTTTACCTTTCTGTATCGCATTCAAAGACCTTGTATTCTTATGTCATTGT ATTCGGCAGATTTTTGTATTTGGTAGCTTATTTATATAGAATCTTGCTAC TTCAAGGCTTGCTTGGAtacatattttgaaaacaaagtttttgtattttt catttaaaggaattttagaaaaataagtaaaaagtaagtaatATCAGAAG TAATAATGGAGAACCAGTCTTTGGAATCGCAGACAACAGAAAAGGTTGCT ACCCTTGGTGAGCGAATGAAAACATTCGAGCGTACAGAACAAGTCGAACC GTACCAAGCATTCATTGTACGAGCTGATGGCAATCGTTTCTCAAAATACA CCAAAGGTTTACAAAAACCTTTCGATGAAGCATTTCAACGAGCTATGGTC AAAACAGCCAACGGATTGATGGATCATTTCAGCTGTGCTACCATTTTTGT ATGTTCAGATGAAATTAGCCTGGTTTTCAGTCCAGTATGCAGTCAAGAAG AATCAGAGGCTAACCAAGCATCTAACAACAAACAAACGCACATTTACTCT GGGCGTCATAATAAGATCGAAACATTGGTTAGCTCAAAAGCCTCTGTTCT CTTTAACAAGTTTATGTTGGAAGAAgtcaggctaaaaagtgccgaAAACC CTGGTGTATATGCCAAGACTTTCTTAGATAGAGTTGAAAGCCAAGATGCT ATTTTCGATGCCCGCTTGATTCCGTTTCCTCTAGGGAGCGAATTCGAGAT TGTCAATAATCTAATATGGCGTTCTTGCTACGATTGTCATAGAAACACTG TTTCATCATACGGTAGACACGTGTTAGGTACAAAAGCGTGCGAAAATAAA AAGTCTCACCAAATGATTCAActtatgaaaattgaaaaagatttcgATTT TGATGAGGTTCCCACGGCGTACaagtttggtgtttttggtaAAAAAGCTT TACATGTGCTAACTAACGATCAAGGAGAAAATTACACTCGTCATaaacat ttcaatttttgcaCCAATCTTGTGAAAGAAGACCGAGATTGCACTTTGGA cttatttatgaaaaaatattttgaagaggGACTAATAATGCATGATGAAT ATGTGTTGTAAAAGTCAGAGATTGAACATTTTACATTTTGGTTATTCTTT ATAAGAGCTAGACGGAGTTCTTTATTTATGTAGGCTTAATTGGTCCTATT TTTTGGTAGTTTGAGGCTAAGTttgttcttttgtgtttattttttatgga aaattgGGGAACACCATATTTTTAATGATGGTTTCATGAAAATCCAGTCA AGGCTCAGGGTTGTtcttaaactgttcttattttttgatgtttttgagcc tcattattcttttgaaaattgttcATGAAAATatagagaaaaaaaagttt gaataatGAACAGACCAGAAAGTCTCAACAATAGTTTACTATTTTTGAAA GatgattaaaggttttgtttaatGAGTGATAACGTTTGcctactcatcaa ttttgatttacaagctttttcatattggatttATACGAATGTGGcgcaag attgatcagaaaaacattttttttcttatatcaGTAAAATATAACGATAG GTTGACActatcctgatatgaaatatgtgtctgatatgaaacgggaacac ttatgtaaaaataaaacctttaagaaataaatactatttgtaagatttta aaattctttggaaattttgaacAGATATTTATTTCAATTGAGTTGCGAAA TCTGAAAAACAATAGTTTAGGGGAGCTCCACAGTTATGGCGAGGGAGCGG AGTTGGTCCTTTTTCGAACAAAGAGACAGAATTTggacagaatttcaaaa attagtttCTTGTGAGCTGTGTTTGATTTTGTTAGACGGGATGGCGGGAT TTGGTACCCGTAAATCCTTGGTCTGACTTTGCCAATATTTCGAAAGCTGA TTTAAAGTCTCTGGCAACAAAAAAAATCTGCATCGAGTATAGACTGCCAA AGTGATACCTATCTAACATCATTACATCCATATAACTTTTATTGGAACAT AAATTATGATTTGTCTGTCCTTGGTCTATTCTGCTAGCATCACTCTCTGC TCTAAAATGGGATGCAATGatggaccccagccccactgaaagATTTGGAC AAAAGACTTTGTCCCCAGTGGGGAAtcaccctggaatttcagccccattg gGAAATTcgttttgatttcatccccactcgaaattcaaaattgtactttt aaccttggaacagtagaatttctatccctgTTGGGAATTTCAagaggaat ttttatccctgcTGAGAAAAgcgttccaccggggctgtgagacaggggtg aataGACGTTAGATGGAAGAGGTTTGGAACCTTTTGTCCTTGTTGGGTAT ATACTGTATTACGTACTTTGACCTTTATCTCAACCCAGTGAGAATTTTTC AGCCATCGGGAAGAAAGTGACGAAGCTACAAACATACCAATGGGAATAGC AAATCTCTTAGCTTTTTAGCGAGTGGGGATTTCAAATTCTATGATTTACA GCTGAAAATTCCATTGGGcattatcaaaattcaattaaaaGGGGTAACAA ACGGGTCTGAGTTTAGTTGTATAGTCGATTGGTattaaacacccccttct cacagtccCCTGGGACCCCTtttcactggaaaaattgtctagaatttcgt ccccagtggaaaattatcctccaatttttgtctccagtgaaaataatcaa ataaaccagtcctcactgcaaaatgttatgctttctatccccactgaact ttctgacttgaaaacaaaagagttGAAATCCCTAGCCATAAGAAATATGG AAATTTCAATCCCCATTGTGTTTCAGTTCGTTATGTTTACCCATACTGGT TTAAAAAATCCTACCGNgtagccataaaaaatatggaaatttcaatcccc atcgagttttagttcgttatttttacccccactggttgaaaaaatcctac cgggtctgtgagaagggggtgttattaaaaaagatatttgtcTTTCTTAC AGTACAATGTCCAACTGGTACAAGAGAAGTCGATAATGTTTGTCAACCGT GTTCAGCTGGATACTACCAAACAAAAGTAGGCCAAAGCGCATGCGTGAAA TGTCCGTTCGGTCATACGACAAAAGAAGTTGGGACTACCAGTCCTCATGA TTGCTTTGTTAAgatttaattattattttttaatatcCTTAAAATATTGA GaatgaattttttaaagttatATATAATTAGCTTATTCATTAGTAAGGGG TGATTATATATCGAGTGACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033635XLOC_033635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053288-exon-scaffold_228-1491911889:309026..310204TCONS_00053288-exon-scaffold_228-1491911889:309026..310204Clytia hemisphaericaexon
TCONS_00053288-exon-scaffold_228-1510915933:309026..310204TCONS_00053288-exon-scaffold_228-1510915933:309026..310204Clytia hemisphaericaexon
TCONS_00053288-exon-scaffold_228-1575043694:309026..310204TCONS_00053288-exon-scaffold_228-1575043694:309026..310204Clytia hemisphaericaexon
TCONS_00053288-exon-scaffold_228-1491911889:312078..312348TCONS_00053288-exon-scaffold_228-1491911889:312078..312348Clytia hemisphaericaexon
TCONS_00053288-exon-scaffold_228-1510915933:312078..312348TCONS_00053288-exon-scaffold_228-1510915933:312078..312348Clytia hemisphaericaexon
TCONS_00053288-exon-scaffold_228-1575043694:312078..312348TCONS_00053288-exon-scaffold_228-1575043694:312078..312348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:309026..312348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.115071 0 0 0 0 2.7887 3.33946 1.1577 2.5761 0 0 1.58597 1.04054 0 0.866261 0.306528 1.25879e-06 1.77049 0.948924 0.835148 0 1.34058 0 0.0565339 0.0559819 0 0.501473 0.150201 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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