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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053284 ID=TCONS_00053284|Name=TCONS_00053284|organism=Clytia hemisphaerica|type=transcript|length=7343bpRun BLAST on NCBI transcript from alignment at scaffold_228:258791..312348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053284 ID=TCONS_00053284|Name=TCONS_00053284|organism=Clytia hemisphaerica|type=transcript|length=53558bp|location=Sequence derived from alignment at scaffold_228:258791..312348+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053284 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 186.422 bits (472), Expect = 2.179e-47 Identity = 135/422 (31.99%), Postives = 204/422 (48.34%), Query Frame = 1
Query: 259 QKTYLKSVKERKLRTIHECCDGWAPHNGECTIPLCKPACQHGTCMKPN--ICSCQKGYKGKQCSTEIDECQTTSGAKPVC-------DQICKNLPGSYMCSCKKGYQKINPRDPLHPTCINVNECSISQSLCQCSNPSSSCVATCHDSIGSYHCTCSKGYKLS-GKHLCVDQNECSTNTHGCQHYCYNNHGKYSCGCKNGYTLNPLDGKTCLDIDECKYANGGCEQICHNKPGAYSCQCRKGFKLDADKRSCIDEDECSTFKPCDPTLGSCHNTRGSYSCSCKPGYQLDVKGVLCVDIDECLSQRHGCTHKCSNLIGSYQCICPIGYKLSWDRRTCEEINECKVGSHNCQHLCSNTVGSYTCKCRPGFQLNPDGRSCKSLP-CRPLPDISHG-KLTCPSTNLGAVCSYACNNGYRLLGNGQR 1488
Q L SV ++KL T H C HN C H P +C C++GY ++ QTT + +C +Q+C N+PGS++C C GY C+ V+ C++ + C C ++ GSY C C +G+ L+ K C + C+++ HGCQH C N YSC C G+TLNP D KTC I+ C GCE C N +Y C+C +G+ LD + ++C D C+ L C NT S+ C C G+ ++ C +D CL HGC + C N+ S+ C CP G+ L D +TC +++ C +G H C+H C ++ S+ C+C G+ L DG++C+ C+ I HG + C +++ C C G+RL +G+R
Sbjct: 224 QIETLTSVFQKKLCTAHMC--STLEHN-----------CAHFCINIPGSYVCRCKQGYI-------LNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAED----GKRCVAVD---------YCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNP-DKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQL--CLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQA---IDHGCEHICVNSDDSYTCE--CLEGFRLAEDGKR 604 HSP 2 Score: 170.629 bits (431), Expect = 1.972e-42 Identity = 123/364 (33.79%), Postives = 165/364 (45.33%), Query Frame = 1
Query: 403 ICSCQKGYK----GKQCSTEIDECQTTSGAKPVCDQICKNLPGSYMCSCKKGYQKINPRDPLHPTCINVNECSISQSLCQCSNPSSSCVATCHDSIGSYHCTCSKGYKLS-GKHLCVDQNECSTNTHGCQHYCYNNHGKYSCGCKNGYTLNPLDGKTCLDIDECKYANGGCEQICHNKPGAYSCQCRKGFKLDADKRSCIDEDEC-----------------------------STFKPCDP----TLG------SCHNTRGSYSCSCKPGYQLDVKGVLCVDIDECLSQRHGCTHKCSNLIGSYQCICPIGYKLSWDRRTCEEINECKVGSHNCQHLCSNTVGSYTCKCRPGFQLNPDGRSCK 1362
+C C GY GK+C +D C + + C+ C N GSY+C C +G+ +P TC ++ C+ S CQ C ++ SY C C KG+ L+ K C N C+ N GC+H C N Y C C GYTL+P +GKTC +D C + GCEQ+C N ++ CQC +GF ++ D ++C D C S K C LG SC ++ S+ C C GY L G C D C + HGC H C N SY C C G++L+ D + C + CK H C+H+C N SY CKC GF L DGR CK
Sbjct: 302 VCQCYSGYALAEDGKRC-VAVDYCASENHG---CEHECVNADGSYLCQCHEGF----ALNPDKKTCTKIDYCASSNHGCQ---------HECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDP-NGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCK 647 The following BLAST results are available for this feature:
BLAST of TCONS_00053284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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